Wall clock time and date at job start Sat Apr 11 2020 06:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99786 * 2 1 4 4 H 1.48500 * 109.47047 * 273.30690 * 3 2 1 5 5 H 1.48498 * 109.47503 * 33.31388 * 3 2 1 6 6 H 1.48508 * 109.46844 * 153.31083 * 3 2 1 7 7 C 1.38808 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00654 * 4.29712 * 7 2 1 9 9 N 1.36947 * 119.99859 * 184.29752 * 7 2 1 10 10 C 1.46499 * 120.00109 * 184.94487 * 9 7 2 11 11 C 1.52994 * 109.47063 * 184.99539 * 10 9 7 12 12 C 1.50696 * 112.85070 * 293.98227 * 11 10 9 13 13 C 1.38238 * 119.99721 * 126.31250 * 12 11 10 14 14 C 1.38241 * 119.99701 * 179.81308 * 13 12 11 15 15 C 1.38241 * 119.99972 * 0.41247 * 14 13 12 16 16 C 1.38234 * 119.99717 * 359.81726 * 15 14 13 17 17 C 1.38228 * 120.00070 * 306.58308 * 12 11 10 18 18 C 1.53782 * 113.61359 * 65.17987 * 11 10 9 19 19 C 1.53788 * 87.08056 * 89.19932 * 18 11 10 20 20 H 1.08997 * 113.61267 * 270.79802 * 19 18 11 21 21 N 1.46508 * 113.61282 * 139.98375 * 19 18 11 22 22 C 1.34770 * 120.00093 * 155.00022 * 21 19 18 23 23 O 1.21621 * 119.99759 * 359.97438 * 22 21 19 24 24 C 1.47103 * 120.00182 * 179.97438 * 22 21 19 25 25 C 1.32994 * 119.99683 * 173.86339 * 24 22 21 26 26 C 1.50693 * 120.00305 * 352.85254 * 25 24 22 27 27 C 1.53003 * 117.49910 * 180.89195 * 26 25 24 28 28 C 1.52997 * 60.00387 * 252.51273 * 27 26 25 29 29 C 1.53774 * 87.08041 * 25.43375 * 19 18 11 30 30 H 0.96993 * 120.00156 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99861 * 4.94589 * 9 7 2 32 32 H 1.08997 * 109.47228 * 64.99241 * 10 9 7 33 33 H 1.09007 * 109.46886 * 304.99808 * 10 9 7 34 34 H 1.08000 * 120.00340 * 359.97438 * 13 12 11 35 35 H 1.08000 * 120.00074 * 180.20562 * 14 13 12 36 36 H 1.07994 * 119.99948 * 179.79094 * 15 14 13 37 37 H 1.08003 * 120.00147 * 179.97438 * 16 15 14 38 38 H 1.07998 * 120.00054 * 359.97438 * 17 12 11 39 39 H 1.08996 * 113.61482 * 334.65052 * 18 11 10 40 40 H 1.08999 * 113.69351 * 203.75516 * 18 11 10 41 41 H 0.97002 * 119.99539 * 334.99386 * 21 19 18 42 42 H 1.08000 * 119.99341 * 353.85962 * 24 22 21 43 43 H 1.08004 * 119.99368 * 172.57250 * 25 24 22 44 44 H 1.08994 * 115.55102 * 326.60360 * 26 25 24 45 45 H 1.09007 * 117.49572 * 359.97438 * 27 26 25 46 46 H 1.09000 * 117.49743 * 145.01643 * 27 26 25 47 47 H 1.08995 * 117.49785 * 252.51574 * 28 27 26 48 48 H 1.09002 * 117.52317 * 107.47840 * 28 27 26 49 49 H 1.09001 * 113.62080 * 89.11702 * 29 19 18 50 50 H 1.09005 * 113.61089 * 220.02045 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4277 2.0868 -1.3977 5 1 1.4844 2.6314 0.7689 6 1 3.5810 1.4209 0.6289 7 6 2.0102 -1.2021 0.0005 8 1 1.4725 -2.1362 -0.0691 9 7 3.3768 -1.2038 0.0894 10 6 4.1164 -2.4637 -0.0189 11 6 5.6027 -2.2062 0.2368 12 6 6.2395 -1.3490 -0.8265 13 6 6.9288 -0.2048 -0.4708 14 6 7.5163 0.5795 -1.4459 15 6 7.4071 0.2241 -2.7774 16 6 6.7137 -0.9176 -3.1333 17 6 6.1295 -1.7039 -2.1579 18 6 5.9094 -1.7396 1.6697 19 6 6.0508 -3.2257 2.0392 20 1 5.1149 -3.6889 2.3516 21 7 7.1561 -3.4986 2.9614 22 6 7.1184 -4.5871 3.7551 23 8 6.1666 -5.3426 3.7062 24 6 8.2285 -4.8613 4.6806 25 6 8.1377 -5.8644 5.5491 26 6 6.8408 -6.6173 5.6979 27 6 6.7940 -7.7470 6.7286 28 6 6.8131 -8.0752 5.2344 29 6 6.4028 -3.4781 0.5638 30 1 -0.4850 0.8400 0.0004 31 1 3.8550 -0.3707 0.2241 32 1 3.9860 -2.8767 -1.0191 33 1 3.7381 -3.1716 0.7186 34 1 7.0106 0.0751 0.5691 35 1 8.0577 1.4716 -1.1678 36 1 7.8632 0.8385 -3.5394 37 1 6.6280 -1.1951 -4.1736 38 1 5.5876 -2.5957 -2.4361 39 1 5.0688 -1.2464 2.1576 40 1 6.8391 -1.1775 1.7577 41 1 7.9150 -2.8957 3.0004 42 1 9.1171 -4.2481 4.6545 43 1 8.9948 -6.1422 6.1446 44 1 5.9356 -6.0269 5.5563 45 1 7.7015 -7.9460 7.2988 46 1 5.8579 -7.8999 7.2656 47 1 5.8895 -8.4439 4.7883 48 1 7.7329 -8.4896 4.8214 49 1 7.4677 -3.3916 0.3479 50 1 5.9605 -4.3884 0.1589 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105414820.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:23 Heat of formation + Delta-G solvation = 74.451171 kcal Electronic energy + Delta-G solvation = -29126.638923 eV Core-core repulsion = 25314.214029 eV Total energy + Delta-G solvation = -3812.424894 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.72635 -39.54752 -38.01341 -37.20163 -34.66332 -33.41412 -32.59113 -31.12827 -30.71912 -30.54354 -26.93701 -25.76166 -24.82641 -23.43110 -22.50416 -22.28842 -21.90510 -21.59755 -20.80691 -19.79280 -18.53811 -17.49611 -17.20123 -16.96920 -16.06400 -15.60747 -15.10071 -14.91076 -14.64298 -14.55643 -14.45406 -14.38995 -13.76857 -13.45017 -13.40096 -13.29846 -13.02784 -12.93787 -12.49506 -12.25929 -12.19575 -12.02484 -11.86891 -11.72103 -11.36961 -11.25760 -11.20246 -11.03414 -10.87619 -10.60827 -10.47320 -10.27185 -10.23448 -9.95731 -9.62357 -9.56870 -9.28347 -8.92592 -8.84764 -8.71163 -8.42498 -7.17337 -5.73837 -3.08289 1.14932 1.56827 1.60783 3.17373 3.22571 3.38391 3.44224 3.47512 3.81637 3.97006 4.37895 4.57562 4.59863 4.62458 4.65825 4.79161 4.85543 4.90348 4.91808 5.10227 5.11645 5.15389 5.17455 5.23790 5.30258 5.44661 5.56335 5.64274 5.69855 5.71677 5.73037 5.74842 5.84965 5.94508 5.95232 5.95937 6.01124 6.07386 6.14367 6.17672 6.25059 6.29375 6.37923 6.55338 6.60330 6.63749 6.70143 6.78071 6.89120 7.20630 7.52865 8.04325 8.24715 8.45636 9.26010 9.98064 10.19021 11.44678 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010328 B = 0.003021 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.468149 B = 9267.289006 C =11020.019874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.240 4.240 8 H 0.090 0.910 9 N -0.750 5.750 10 C 0.182 3.818 11 C -0.049 4.049 12 C -0.047 4.047 13 C -0.123 4.123 14 C -0.123 4.123 15 C -0.131 4.131 16 C -0.119 4.119 17 C -0.103 4.103 18 C -0.140 4.140 19 C 0.126 3.874 20 H 0.120 0.880 21 N -0.716 5.716 22 C 0.540 3.460 23 O -0.531 6.531 24 C -0.219 4.219 25 C -0.034 4.034 26 C -0.127 4.127 27 C -0.188 4.188 28 C -0.155 4.155 29 C -0.130 4.130 30 H 0.259 0.741 31 H 0.364 0.636 32 H 0.029 0.971 33 H 0.036 0.964 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.398 0.602 42 H 0.127 0.873 43 H 0.124 0.876 44 H 0.133 0.867 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.097 0.903 48 H 0.090 0.910 49 H 0.083 0.917 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.267 -8.564 6.504 25.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.190 4.190 3 Si 0.715 3.285 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.370 4.370 8 H 0.107 0.893 9 N -0.396 5.396 10 C 0.055 3.945 11 C -0.050 4.050 12 C -0.047 4.047 13 C -0.141 4.141 14 C -0.141 4.141 15 C -0.149 4.149 16 C -0.137 4.137 17 C -0.121 4.121 18 C -0.178 4.178 19 C 0.022 3.978 20 H 0.138 0.862 21 N -0.365 5.365 22 C 0.330 3.670 23 O -0.410 6.410 24 C -0.240 4.240 25 C -0.054 4.054 26 C -0.145 4.145 27 C -0.225 4.225 28 C -0.192 4.192 29 C -0.169 4.169 30 H 0.069 0.931 31 H 0.197 0.803 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.139 0.861 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.232 0.768 42 H 0.145 0.855 43 H 0.142 0.858 44 H 0.151 0.849 45 H 0.110 0.890 46 H 0.114 0.886 47 H 0.116 0.884 48 H 0.109 0.891 49 H 0.102 0.898 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 22.326 -9.183 6.435 24.983 hybrid contribution 0.993 1.799 -0.118 2.058 sum 23.319 -7.385 6.317 25.263 Atomic orbital electron populations 1.69706 1.05094 1.25710 1.57698 1.24657 0.95167 0.97071 1.02128 0.86544 0.79053 0.85220 0.77730 1.21229 1.21870 1.20404 1.19047 0.80836 0.94673 1.42436 0.89257 1.42688 1.04203 1.03621 1.89120 1.20441 0.85593 0.89847 0.98635 1.20890 0.96641 0.95149 0.92363 1.19538 0.96189 0.95012 0.93942 1.21108 0.98510 0.94950 0.99520 1.21062 1.00329 0.99463 0.93205 1.21059 1.00391 0.97382 0.96100 1.21100 0.98125 0.95348 0.99168 1.20990 0.98725 1.00120 0.92312 1.23505 1.02688 0.95703 0.95907 1.22535 0.91119 0.96462 0.87692 0.86174 1.45955 1.23306 1.26495 1.40780 1.18644 0.86721 0.81009 0.80668 1.90781 1.35070 1.47150 1.67994 1.22627 0.99825 1.01683 0.99854 1.23100 0.96238 0.92286 0.93747 1.21543 0.98168 0.91248 1.03517 1.23086 1.03133 1.03999 0.92281 1.22793 1.03296 0.96636 0.96506 1.23459 1.00140 0.97553 0.95791 0.93132 0.80271 0.95339 0.94568 0.86076 0.86565 0.86641 0.86392 0.85999 0.89420 0.89667 0.76822 0.85484 0.85776 0.84942 0.89041 0.88613 0.88438 0.89136 0.89847 0.90594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.73 13.97 55.49 0.78 -28.96 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 22.68 27.97 -169.99 -4.75 17.93 16 4 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 5 H -0.29 -7.56 7.11 56.52 0.40 -7.15 16 6 H -0.28 -6.64 6.20 56.52 0.35 -6.29 16 7 C -0.24 -6.84 10.47 -15.06 -0.16 -7.00 16 8 H 0.09 2.73 8.06 -52.48 -0.42 2.30 16 9 N -0.75 -17.75 4.99 -59.91 -0.30 -18.05 16 10 C 0.18 3.49 5.34 -4.05 -0.02 3.47 16 11 C -0.05 -0.74 0.69 -154.85 -0.11 -0.84 16 12 C -0.05 -0.70 4.65 -104.63 -0.49 -1.19 16 13 C -0.12 -1.74 9.16 -39.58 -0.36 -2.10 16 14 C -0.12 -1.61 10.05 -39.58 -0.40 -2.00 16 15 C -0.13 -1.69 10.05 -39.58 -0.40 -2.09 16 16 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 17 C -0.10 -1.54 9.27 -39.59 -0.37 -1.91 16 18 C -0.14 -1.89 6.20 -25.91 -0.16 -2.05 16 19 C 0.13 1.64 3.89 -67.11 -0.26 1.38 16 20 H 0.12 1.89 6.94 -51.93 -0.36 1.53 16 21 N -0.72 -7.63 5.35 -54.19 -0.29 -7.92 16 22 C 0.54 6.53 7.67 -12.67 -0.10 6.44 16 23 O -0.53 -8.29 12.94 5.26 0.07 -8.22 16 24 C -0.22 -1.93 10.02 -37.81 -0.38 -2.31 16 25 C -0.03 -0.29 9.74 -36.13 -0.35 -0.64 16 26 C -0.13 -1.31 4.31 -91.77 -0.40 -1.71 16 27 C -0.19 -1.55 10.23 -26.73 -0.27 -1.83 16 28 C -0.16 -1.48 10.23 -26.73 -0.27 -1.76 16 29 C -0.13 -1.64 7.01 -25.92 -0.18 -1.82 16 30 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 31 H 0.36 8.56 5.18 -40.82 -0.21 8.35 16 32 H 0.03 0.56 7.17 -51.93 -0.37 0.19 16 33 H 0.04 0.72 7.32 -51.93 -0.38 0.34 16 34 H 0.12 1.53 5.89 -52.49 -0.31 1.22 16 35 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 36 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 37 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 38 H 0.12 1.75 7.35 -52.49 -0.39 1.36 16 39 H 0.09 1.40 7.91 -51.93 -0.41 0.99 16 40 H 0.09 0.95 6.13 -51.93 -0.32 0.63 16 41 H 0.40 3.09 8.71 -40.82 -0.36 2.74 16 42 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 44 H 0.13 1.73 6.30 -51.93 -0.33 1.40 16 45 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 46 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 48 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 49 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 50 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 LS Contribution 404.49 15.07 6.10 6.10 Total: -1.00 -34.01 404.49 -11.26 -45.26 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -7.69 Total: 13.78 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -5.16 Total: -19.93 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.19 Total: -54.92 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.07 Total: -8.22 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.75 Total: 17.93 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.01 -11.26 -45.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105414820.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.714 kcal (2) G-P(sol) polarization free energy of solvation -34.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds