Wall clock time and date at job start Sat Apr 11 2020 06:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99786 * 2 1 4 4 H 1.48500 * 109.47047 * 273.30690 * 3 2 1 5 5 H 1.48498 * 109.47503 * 33.31388 * 3 2 1 6 6 H 1.48508 * 109.46844 * 153.31083 * 3 2 1 7 7 C 1.38808 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00654 * 4.29712 * 7 2 1 9 9 N 1.36947 * 119.99859 * 184.29752 * 7 2 1 10 10 C 1.46499 * 120.00109 * 184.94487 * 9 7 2 11 11 C 1.52994 * 109.47063 * 184.99539 * 10 9 7 12 12 C 1.50696 * 112.85070 * 293.98227 * 11 10 9 13 13 C 1.38238 * 119.99721 * 126.31250 * 12 11 10 14 14 C 1.38241 * 119.99701 * 179.81308 * 13 12 11 15 15 C 1.38241 * 119.99972 * 0.41247 * 14 13 12 16 16 C 1.38234 * 119.99717 * 359.81726 * 15 14 13 17 17 C 1.38228 * 120.00070 * 306.58308 * 12 11 10 18 18 C 1.53782 * 113.61359 * 65.17987 * 11 10 9 19 19 C 1.53788 * 87.08056 * 89.19932 * 18 11 10 20 20 H 1.08997 * 113.61267 * 270.79802 * 19 18 11 21 21 N 1.46508 * 113.61282 * 139.98375 * 19 18 11 22 22 C 1.34770 * 120.00093 * 155.00022 * 21 19 18 23 23 O 1.21621 * 119.99759 * 359.97438 * 22 21 19 24 24 C 1.47103 * 120.00182 * 179.97438 * 22 21 19 25 25 C 1.32994 * 119.99683 * 173.86339 * 24 22 21 26 26 C 1.50693 * 120.00305 * 352.85254 * 25 24 22 27 27 C 1.53003 * 117.49910 * 180.89195 * 26 25 24 28 28 C 1.52997 * 60.00387 * 252.51273 * 27 26 25 29 29 C 1.53774 * 87.08041 * 25.43375 * 19 18 11 30 30 H 0.96993 * 120.00156 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99861 * 4.94589 * 9 7 2 32 32 H 1.08997 * 109.47228 * 64.99241 * 10 9 7 33 33 H 1.09007 * 109.46886 * 304.99808 * 10 9 7 34 34 H 1.08000 * 120.00340 * 359.97438 * 13 12 11 35 35 H 1.08000 * 120.00074 * 180.20562 * 14 13 12 36 36 H 1.07994 * 119.99948 * 179.79094 * 15 14 13 37 37 H 1.08003 * 120.00147 * 179.97438 * 16 15 14 38 38 H 1.07998 * 120.00054 * 359.97438 * 17 12 11 39 39 H 1.08996 * 113.61482 * 334.65052 * 18 11 10 40 40 H 1.08999 * 113.69351 * 203.75516 * 18 11 10 41 41 H 0.97002 * 119.99539 * 334.99386 * 21 19 18 42 42 H 1.08000 * 119.99341 * 353.85962 * 24 22 21 43 43 H 1.08004 * 119.99368 * 172.57250 * 25 24 22 44 44 H 1.08994 * 115.55102 * 326.60360 * 26 25 24 45 45 H 1.09007 * 117.49572 * 359.97438 * 27 26 25 46 46 H 1.09000 * 117.49743 * 145.01643 * 27 26 25 47 47 H 1.08995 * 117.49785 * 252.51574 * 28 27 26 48 48 H 1.09002 * 117.52317 * 107.47840 * 28 27 26 49 49 H 1.09001 * 113.62080 * 89.11702 * 29 19 18 50 50 H 1.09005 * 113.61089 * 220.02045 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4277 2.0868 -1.3977 5 1 1.4844 2.6314 0.7689 6 1 3.5810 1.4209 0.6289 7 6 2.0102 -1.2021 0.0005 8 1 1.4725 -2.1362 -0.0691 9 7 3.3768 -1.2038 0.0894 10 6 4.1164 -2.4637 -0.0189 11 6 5.6027 -2.2062 0.2368 12 6 6.2395 -1.3490 -0.8265 13 6 6.9288 -0.2048 -0.4708 14 6 7.5163 0.5795 -1.4459 15 6 7.4071 0.2241 -2.7774 16 6 6.7137 -0.9176 -3.1333 17 6 6.1295 -1.7039 -2.1579 18 6 5.9094 -1.7396 1.6697 19 6 6.0508 -3.2257 2.0392 20 1 5.1149 -3.6889 2.3516 21 7 7.1561 -3.4986 2.9614 22 6 7.1184 -4.5871 3.7551 23 8 6.1666 -5.3426 3.7062 24 6 8.2285 -4.8613 4.6806 25 6 8.1377 -5.8644 5.5491 26 6 6.8408 -6.6173 5.6979 27 6 6.7940 -7.7470 6.7286 28 6 6.8131 -8.0752 5.2344 29 6 6.4028 -3.4781 0.5638 30 1 -0.4850 0.8400 0.0004 31 1 3.8550 -0.3707 0.2241 32 1 3.9860 -2.8767 -1.0191 33 1 3.7381 -3.1716 0.7186 34 1 7.0106 0.0751 0.5691 35 1 8.0577 1.4716 -1.1678 36 1 7.8632 0.8385 -3.5394 37 1 6.6280 -1.1951 -4.1736 38 1 5.5876 -2.5957 -2.4361 39 1 5.0688 -1.2464 2.1576 40 1 6.8391 -1.1775 1.7577 41 1 7.9150 -2.8957 3.0004 42 1 9.1171 -4.2481 4.6545 43 1 8.9948 -6.1422 6.1446 44 1 5.9356 -6.0269 5.5563 45 1 7.7015 -7.9460 7.2988 46 1 5.8579 -7.8999 7.2656 47 1 5.8895 -8.4439 4.7883 48 1 7.7329 -8.4896 4.8214 49 1 7.4677 -3.3916 0.3479 50 1 5.9605 -4.3884 0.1589 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105414820.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:22 Heat of formation + Delta-G solvation = 54.475798 kcal Electronic energy + Delta-G solvation = -29127.505120 eV Core-core repulsion = 25314.214029 eV Total energy + Delta-G solvation = -3813.291091 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.83379 -40.50587 -38.99914 -38.03725 -36.40957 -34.72128 -33.44539 -33.02718 -31.80480 -31.57243 -28.52427 -26.91769 -25.95832 -24.52292 -23.88551 -23.20721 -23.07697 -22.60376 -21.80012 -20.73837 -20.09739 -19.09088 -18.26162 -17.87452 -17.00509 -16.68509 -16.45979 -16.18973 -15.97243 -15.69007 -15.50706 -15.41519 -15.15073 -14.76703 -14.62800 -14.33097 -14.23751 -14.11600 -13.94841 -13.56658 -13.44766 -13.24089 -12.94628 -12.86811 -12.61724 -12.41580 -12.28053 -12.22482 -12.07923 -11.95149 -11.91995 -11.73513 -11.44296 -11.26930 -11.22896 -10.98914 -10.53571 -10.09726 -9.80931 -9.74188 -9.48419 -9.28863 -8.04836 -5.37162 0.43754 0.53030 0.57792 1.32366 1.38017 1.44327 2.30585 2.35415 2.45488 2.92531 3.09592 3.25268 3.34752 3.45575 3.67948 3.72816 3.77686 3.94977 4.01041 4.05485 4.07995 4.19377 4.21806 4.25550 4.33160 4.40596 4.50523 4.57951 4.66158 4.71086 4.75409 4.77814 4.78292 4.86307 4.92899 5.00071 5.08553 5.12752 5.17295 5.22842 5.23667 5.26516 5.29454 5.36423 5.62313 5.63982 5.66497 5.68985 5.73889 5.80830 6.18546 6.20589 6.70778 7.06722 7.38617 7.82474 8.04431 9.17129 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010328 B = 0.003021 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.468149 B = 9267.289006 C =11020.019874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.062 4.062 3 Si 0.954 3.046 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.248 1.248 7 C -0.231 4.231 8 H 0.053 0.947 9 N -0.747 5.747 10 C 0.180 3.820 11 C -0.047 4.047 12 C -0.062 4.062 13 C -0.133 4.133 14 C -0.125 4.125 15 C -0.134 4.134 16 C -0.128 4.128 17 C -0.126 4.126 18 C -0.129 4.129 19 C 0.131 3.869 20 H 0.084 0.916 21 N -0.702 5.702 22 C 0.529 3.471 23 O -0.578 6.578 24 C -0.223 4.223 25 C -0.028 4.028 26 C -0.148 4.148 27 C -0.168 4.168 28 C -0.166 4.166 29 C -0.114 4.114 30 H 0.258 0.742 31 H 0.368 0.632 32 H 0.022 0.978 33 H 0.023 0.977 34 H 0.137 0.863 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.134 0.866 38 H 0.114 0.886 39 H 0.061 0.939 40 H 0.120 0.880 41 H 0.416 0.584 42 H 0.166 0.834 43 H 0.163 0.837 44 H 0.095 0.905 45 H 0.118 0.882 46 H 0.094 0.906 47 H 0.079 0.921 48 H 0.103 0.897 49 H 0.107 0.893 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.123 -6.985 7.209 29.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.253 4.253 3 Si 0.781 3.219 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.173 1.173 7 C -0.362 4.362 8 H 0.071 0.929 9 N -0.393 5.393 10 C 0.054 3.946 11 C -0.048 4.048 12 C -0.063 4.063 13 C -0.150 4.150 14 C -0.142 4.142 15 C -0.152 4.152 16 C -0.146 4.146 17 C -0.144 4.144 18 C -0.167 4.167 19 C 0.025 3.975 20 H 0.102 0.898 21 N -0.353 5.353 22 C 0.320 3.680 23 O -0.459 6.459 24 C -0.243 4.243 25 C -0.047 4.047 26 C -0.166 4.166 27 C -0.204 4.204 28 C -0.203 4.203 29 C -0.153 4.153 30 H 0.067 0.933 31 H 0.202 0.798 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.154 0.846 35 H 0.162 0.838 36 H 0.160 0.840 37 H 0.152 0.848 38 H 0.132 0.868 39 H 0.080 0.920 40 H 0.138 0.862 41 H 0.254 0.746 42 H 0.184 0.816 43 H 0.180 0.820 44 H 0.113 0.887 45 H 0.136 0.864 46 H 0.112 0.888 47 H 0.098 0.902 48 H 0.121 0.879 49 H 0.126 0.874 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 27.256 -7.612 7.144 29.186 hybrid contribution -0.596 1.174 -0.374 1.369 sum 26.659 -6.438 6.770 28.249 Atomic orbital electron populations 1.69889 1.07144 1.26645 1.59770 1.25474 0.96054 1.01100 1.02668 0.85412 0.78874 0.79841 0.77768 1.21077 1.21974 1.17291 1.19014 0.82996 0.93344 1.40882 0.92947 1.42587 1.02515 1.05328 1.88847 1.20501 0.88611 0.87756 0.97717 1.20642 0.93587 0.96925 0.93618 1.19551 0.97252 0.95785 0.93671 1.21344 0.98453 0.94490 1.00739 1.21441 0.99776 1.00022 0.93011 1.21439 0.99656 0.97091 0.96987 1.21376 0.97914 0.95555 0.99778 1.21113 0.99698 1.00609 0.93007 1.23480 1.03225 0.95821 0.94201 1.22162 0.90758 0.96081 0.88494 0.89828 1.45777 1.23051 1.26585 1.39891 1.19367 0.87092 0.80568 0.80962 1.90782 1.37071 1.48720 1.69369 1.22784 0.99729 1.02679 0.99137 1.23409 0.96128 0.91420 0.93793 1.21470 0.98182 0.91535 1.05392 1.23169 1.04291 1.01504 0.91482 1.22818 1.03111 0.96398 0.97983 1.23380 1.00959 0.96024 0.94945 0.93326 0.79768 0.95985 0.95924 0.84557 0.83830 0.84040 0.84811 0.86832 0.92002 0.86224 0.74625 0.81617 0.81997 0.88658 0.86404 0.88779 0.90201 0.87855 0.87447 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.80 13.97 21.65 0.30 -64.50 16 2 C -0.06 -3.74 5.50 84.86 0.47 -3.27 16 3 Si 0.95 46.94 27.97 68.60 1.92 48.85 16 4 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 5 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.25 -10.88 6.20 99.48 0.62 -10.26 16 7 C -0.23 -13.69 10.47 84.03 0.88 -12.81 16 8 H 0.05 3.42 8.06 -2.91 -0.02 3.40 16 9 N -0.75 -35.93 4.99 -343.45 -1.71 -37.64 16 10 C 0.18 7.20 5.34 86.38 0.46 7.66 16 11 C -0.05 -1.37 0.69 -52.40 -0.04 -1.41 16 12 C -0.06 -1.77 4.65 -19.87 -0.09 -1.87 16 13 C -0.13 -3.29 9.16 22.27 0.20 -3.09 16 14 C -0.12 -2.76 10.05 22.27 0.22 -2.54 16 15 C -0.13 -2.98 10.05 22.27 0.22 -2.76 16 16 C -0.13 -3.22 10.05 22.27 0.22 -2.99 16 17 C -0.13 -3.65 9.27 22.27 0.21 -3.44 16 18 C -0.13 -3.33 6.20 31.12 0.19 -3.14 16 19 C 0.13 3.40 3.89 45.52 0.18 3.58 16 20 H 0.08 2.83 6.94 -2.39 -0.02 2.82 16 21 N -0.70 -13.99 5.35 -443.62 -2.37 -16.36 16 22 C 0.53 12.54 7.67 86.57 0.66 13.20 16 23 O -0.58 -19.01 12.94 -4.10 -0.05 -19.06 16 24 C -0.22 -3.37 10.02 23.43 0.23 -3.14 16 25 C -0.03 -0.41 9.74 24.52 0.24 -0.17 16 26 C -0.15 -3.04 4.31 -11.54 -0.05 -3.09 16 27 C -0.17 -2.56 10.23 30.59 0.31 -2.25 16 28 C -0.17 -3.18 10.23 30.60 0.31 -2.87 16 29 C -0.11 -2.81 7.01 31.12 0.22 -2.59 16 30 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 31 H 0.37 16.99 5.18 -92.71 -0.48 16.51 16 32 H 0.02 0.92 7.17 -2.39 -0.02 0.90 16 33 H 0.02 0.96 7.32 -2.38 -0.02 0.95 16 34 H 0.14 2.86 5.89 -2.91 -0.02 2.84 16 35 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 36 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.13 2.79 8.06 -2.91 -0.02 2.76 16 38 H 0.11 3.32 7.35 -2.91 -0.02 3.30 16 39 H 0.06 1.95 7.91 -2.39 -0.02 1.93 16 40 H 0.12 2.25 6.13 -2.39 -0.01 2.23 16 41 H 0.42 5.15 8.71 -92.71 -0.81 4.34 16 42 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 43 H 0.16 1.14 8.06 -2.91 -0.02 1.11 16 44 H 0.10 2.70 6.30 -2.39 -0.02 2.68 16 45 H 0.12 1.19 8.14 -2.38 -0.02 1.17 16 46 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.11 2.18 8.09 -2.39 -0.02 2.16 16 50 H 0.07 1.76 8.10 -2.38 -0.02 1.74 16 Total: -1.00 -78.76 404.49 2.72 -76.04 By element: Atomic # 1 Polarization: 40.07 SS G_CDS: -0.42 Total: 39.64 kcal Atomic # 6 Polarization: -32.04 SS G_CDS: 5.06 Total: -26.98 kcal Atomic # 7 Polarization: -114.72 SS G_CDS: -3.78 Total: -118.50 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.05 Total: -19.06 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.92 Total: 48.85 kcal Total: -78.76 2.72 -76.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105414820.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.513 kcal (2) G-P(sol) polarization free energy of solvation -78.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds