Wall clock time and date at job start Sat Apr 11 2020 06:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00349 * 2 1 4 4 H 1.48498 * 109.47015 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47127 * 300.00147 * 3 2 1 6 6 H 1.48500 * 109.47145 * 60.00291 * 3 2 1 7 7 C 1.38811 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00276 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00098 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46953 * 185.62728 * 10 9 7 12 12 C 1.50697 * 112.91060 * 54.11612 * 11 10 9 13 13 C 1.38241 * 120.00049 * 76.81004 * 12 11 10 14 14 C 1.38237 * 119.99899 * 179.76927 * 13 12 11 15 15 C 1.38235 * 119.99776 * 0.50439 * 14 13 12 16 16 C 1.38233 * 120.00470 * 359.75180 * 15 14 13 17 17 C 1.38235 * 119.99764 * 359.97438 * 16 15 14 18 18 C 1.53781 * 113.61321 * 185.36445 * 11 10 9 19 19 C 1.53787 * 87.07963 * 89.11704 * 18 11 10 20 20 H 1.09005 * 113.61153 * 270.80093 * 19 18 11 21 21 N 1.46497 * 113.61126 * 139.98496 * 19 18 11 22 22 C 1.34777 * 119.99783 * 155.00153 * 21 19 18 23 23 O 1.21616 * 120.00342 * 359.97438 * 22 21 19 24 24 C 1.47097 * 120.00009 * 179.97438 * 22 21 19 25 25 C 1.32994 * 120.00152 * 179.97438 * 24 22 21 26 26 C 1.50703 * 120.00368 * 179.97438 * 25 24 22 27 27 C 1.52997 * 117.50261 * 188.74380 * 26 25 24 28 28 C 1.53004 * 117.49813 * 120.08731 * 26 25 24 29 29 C 1.53776 * 113.61644 * 282.86189 * 11 10 9 30 30 H 0.97005 * 119.99214 * 359.97438 * 1 2 3 31 31 H 0.96999 * 119.99710 * 359.97438 * 9 7 2 32 32 H 1.08995 * 109.47484 * 65.62446 * 10 9 7 33 33 H 1.09001 * 109.46959 * 305.62413 * 10 9 7 34 34 H 1.08002 * 119.99994 * 359.97438 * 13 12 11 35 35 H 1.08001 * 120.00057 * 180.23233 * 14 13 12 36 36 H 1.08003 * 119.99799 * 179.72373 * 15 14 13 37 37 H 1.07995 * 120.00314 * 179.97438 * 16 15 14 38 38 H 1.08001 * 120.00148 * 179.97438 * 17 16 15 39 39 H 1.08997 * 113.61507 * 334.57116 * 18 11 10 40 40 H 1.09002 * 113.61765 * 203.66375 * 18 11 10 41 41 H 0.96997 * 120.00247 * 334.99247 * 21 19 18 42 42 H 1.08000 * 120.00182 * 0.02562 * 24 22 21 43 43 H 1.08002 * 120.00391 * 0.02562 * 25 24 22 44 44 H 1.08995 * 115.55044 * 334.42678 * 26 25 24 45 45 H 1.09002 * 117.49958 * 0.02562 * 27 26 25 46 46 H 1.09001 * 117.49624 * 145.02249 * 27 26 25 47 47 H 1.09000 * 117.49877 * 214.98370 * 28 26 25 48 48 H 1.09007 * 117.49428 * 359.97438 * 28 26 25 49 49 H 1.08992 * 113.61925 * 156.33486 * 29 11 10 50 50 H 1.09004 * 113.68891 * 25.44509 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0579 -3.6569 -0.0016 11 6 1.0698 -4.8161 -0.1443 12 6 0.1700 -4.6756 -1.3450 13 6 0.6549 -4.9564 -2.6088 14 6 -0.1719 -4.8320 -3.7097 15 6 -1.4805 -4.4169 -3.5479 16 6 -1.9638 -4.1310 -2.2848 17 6 -1.1387 -4.2608 -1.1833 18 6 1.7249 -6.2023 -0.0244 19 6 1.4726 -6.1036 1.4894 20 1 2.2875 -5.6309 2.0379 21 7 1.0352 -7.3639 2.0947 22 6 1.2529 -7.5935 3.4048 23 8 1.8128 -6.7546 4.0844 24 6 0.8131 -8.8587 4.0128 25 6 1.0284 -9.0855 5.3055 26 6 0.5774 -10.3814 5.9286 27 6 0.6661 -10.5018 7.4512 28 6 1.6485 -11.2702 6.5639 29 6 0.3162 -5.1468 1.1547 30 1 -0.4849 0.8402 0.0004 31 1 0.3555 -2.3880 -0.0016 32 1 2.6062 -3.7599 0.9348 33 1 2.7586 -3.6719 -0.8364 34 1 1.6787 -5.2760 -2.7356 35 1 0.2058 -5.0550 -4.6966 36 1 -2.1251 -4.3155 -4.4085 37 1 -2.9860 -3.8063 -2.1585 38 1 -1.5162 -4.0371 -0.1964 39 1 2.7816 -6.2103 -0.2914 40 1 1.1584 -6.9965 -0.5106 41 1 0.5888 -8.0331 1.5527 42 1 0.3162 -9.6038 3.4093 43 1 1.5256 -8.3405 5.9090 44 1 -0.2575 -10.8761 5.4323 45 1 1.0502 -9.6435 8.0024 46 1 -0.1104 -11.0760 7.9567 47 1 1.5181 -12.3496 6.4861 48 1 2.6795 -10.9177 6.5309 49 1 -0.6353 -5.6524 0.9910 50 1 0.2349 -4.3035 1.8406 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105414821.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:26 Heat of formation + Delta-G solvation = 59.961926 kcal Electronic energy + Delta-G solvation = -28587.626393 eV Core-core repulsion = 24774.573198 eV Total energy + Delta-G solvation = -3813.053195 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.56875 -39.30380 -37.97843 -37.52551 -34.52958 -33.35148 -32.61334 -30.76971 -30.52270 -30.27142 -26.55934 -25.70912 -24.93397 -23.45006 -22.79577 -22.33945 -21.80534 -21.40489 -20.61712 -19.77870 -18.40957 -17.30893 -17.04428 -16.85893 -16.16869 -15.68318 -14.95973 -14.88732 -14.78674 -14.49445 -14.36470 -14.23150 -13.91980 -13.26311 -13.04342 -13.03568 -12.99900 -12.85305 -12.35885 -12.21786 -12.09511 -12.03610 -11.85959 -11.68672 -11.48823 -11.23678 -11.04426 -10.87324 -10.83094 -10.78627 -10.60612 -10.09171 -10.03824 -9.93411 -9.80777 -9.62199 -9.41679 -8.90475 -8.80110 -8.46058 -8.21982 -6.83578 -5.69352 -2.96870 1.13482 1.81240 1.85203 3.15724 3.21139 3.47799 3.53300 3.55437 3.56282 4.20426 4.23521 4.44660 4.54944 4.57445 4.64348 4.72969 4.79043 4.92296 4.96573 5.03228 5.05579 5.21503 5.33419 5.36662 5.42491 5.44623 5.54452 5.64274 5.65172 5.68110 5.79488 5.82256 5.88131 5.91766 6.00984 6.08107 6.11753 6.17434 6.29032 6.32811 6.37814 6.44630 6.51381 6.68274 6.70722 6.76990 6.90740 6.96542 7.10009 7.44219 7.54008 7.76801 8.25021 8.49336 9.61282 10.19353 10.55139 11.53461 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010251 B = 0.002565 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.866258 B =10912.707828 C =12822.755194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.014 4.014 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.178 3.822 11 C -0.044 4.044 12 C -0.041 4.041 13 C -0.112 4.112 14 C -0.124 4.124 15 C -0.131 4.131 16 C -0.116 4.116 17 C -0.101 4.101 18 C -0.130 4.130 19 C 0.123 3.877 20 H 0.119 0.881 21 N -0.713 5.713 22 C 0.543 3.457 23 O -0.543 6.543 24 C -0.212 4.212 25 C -0.038 4.038 26 C -0.141 4.141 27 C -0.171 4.171 28 C -0.167 4.167 29 C -0.138 4.138 30 H 0.253 0.747 31 H 0.386 0.614 32 H 0.022 0.978 33 H 0.026 0.974 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.399 0.601 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.114 0.886 45 H 0.100 0.900 46 H 0.099 0.901 47 H 0.100 0.900 48 H 0.099 0.901 49 H 0.082 0.918 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.960 -24.730 3.693 25.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.210 4.210 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.370 5.370 10 C 0.051 3.949 11 C -0.045 4.045 12 C -0.041 4.041 13 C -0.130 4.130 14 C -0.142 4.142 15 C -0.149 4.149 16 C -0.134 4.134 17 C -0.119 4.119 18 C -0.169 4.169 19 C 0.019 3.981 20 H 0.136 0.864 21 N -0.362 5.362 22 C 0.332 3.668 23 O -0.422 6.422 24 C -0.232 4.232 25 C -0.057 4.057 26 C -0.159 4.159 27 C -0.208 4.208 28 C -0.204 4.204 29 C -0.176 4.176 30 H 0.063 0.937 31 H 0.221 0.779 32 H 0.040 0.960 33 H 0.044 0.956 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.233 0.767 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.132 0.868 45 H 0.118 0.882 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.117 0.883 49 H 0.100 0.900 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.405 -23.994 4.169 24.394 hybrid contribution -0.205 0.815 -0.485 0.970 sum -1.611 -23.179 3.685 23.526 Atomic orbital electron populations 1.69677 1.05021 1.25304 1.57946 1.24707 0.95502 0.97538 1.03217 0.86150 0.78817 0.84355 0.77096 1.20612 1.21997 1.21938 1.19251 0.90992 0.84147 1.42277 0.91252 1.42277 1.06024 0.99523 1.89202 1.20452 0.91940 0.84599 0.97951 1.20849 0.96060 0.95081 0.92518 1.19425 0.93510 0.97416 0.93721 1.20848 0.99119 1.00938 0.92102 1.20989 0.94179 1.00852 0.98172 1.21002 0.95951 1.01000 0.96994 1.21050 0.99734 0.99834 0.92775 1.20999 0.93540 0.98403 0.98979 1.23409 1.01640 0.97014 0.94799 1.22589 0.98590 0.84084 0.92869 0.86364 1.45911 1.60614 1.20069 1.09651 1.18591 0.78920 0.87120 0.82195 1.90816 1.42621 1.47094 1.61670 1.22537 1.06373 0.97651 0.96679 1.23069 0.92806 0.94849 0.94992 1.21334 1.02086 0.96469 0.95982 1.23036 1.02557 1.03278 0.91947 1.22999 0.95955 0.98049 1.03358 1.23515 0.97425 0.99604 0.97106 0.93716 0.77925 0.95996 0.95642 0.86689 0.86821 0.86895 0.86594 0.86185 0.90483 0.89618 0.76686 0.85698 0.85385 0.86762 0.88192 0.88247 0.88206 0.88294 0.89951 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.63 13.06 55.49 0.72 -27.90 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.90 23.04 29.55 -169.99 -5.02 18.02 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 7 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 9 N -0.73 -18.60 5.33 -59.91 -0.32 -18.92 16 10 C 0.18 3.64 5.55 -4.04 -0.02 3.61 16 11 C -0.04 -0.71 0.70 -154.85 -0.11 -0.81 16 12 C -0.04 -0.67 4.26 -104.62 -0.45 -1.12 16 13 C -0.11 -1.75 9.39 -39.58 -0.37 -2.12 16 14 C -0.12 -1.81 10.05 -39.58 -0.40 -2.21 16 15 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 16 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 16 17 C -0.10 -1.73 8.25 -39.58 -0.33 -2.05 16 18 C -0.13 -1.61 6.64 -25.92 -0.17 -1.78 16 19 C 0.12 1.68 3.89 -67.12 -0.26 1.42 16 20 H 0.12 1.91 6.93 -51.93 -0.36 1.55 16 21 N -0.71 -8.07 5.35 -54.20 -0.29 -8.36 16 22 C 0.54 7.13 7.76 -12.67 -0.10 7.03 16 23 O -0.54 -9.57 15.82 5.26 0.08 -9.48 16 24 C -0.21 -2.02 9.67 -37.81 -0.37 -2.38 16 25 C -0.04 -0.35 9.24 -36.12 -0.33 -0.68 16 26 C -0.14 -0.96 6.00 -91.77 -0.55 -1.51 16 27 C -0.17 -1.03 10.24 -26.70 -0.27 -1.30 16 28 C -0.17 -0.97 10.24 -26.69 -0.27 -1.25 16 29 C -0.14 -2.11 6.00 -25.92 -0.16 -2.27 16 30 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.39 10.35 6.58 -40.82 -0.27 10.08 16 32 H 0.02 0.46 7.31 -51.93 -0.38 0.08 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.12 1.61 8.04 -52.49 -0.42 1.19 16 35 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.11 1.38 8.06 -52.48 -0.42 0.95 16 37 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.12 2.06 7.02 -52.49 -0.37 1.69 16 39 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 40 H 0.09 0.90 8.07 -51.93 -0.42 0.48 16 41 H 0.40 3.25 8.71 -40.82 -0.36 2.89 16 42 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.13 1.37 7.49 -52.49 -0.39 0.98 16 44 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.08 1.14 7.44 -51.93 -0.39 0.75 16 50 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 LS Contribution 414.91 15.07 6.25 6.25 Total: -1.00 -34.42 414.91 -11.74 -46.15 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -7.97 Total: 13.60 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -5.20 Total: -19.36 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.12 Total: -55.18 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.08 Total: -9.48 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.42 -11.74 -46.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105414821.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.116 kcal (2) G-P(sol) polarization free energy of solvation -34.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds