Wall clock time and date at job start Sat Apr 11 2020 06:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00009 * 2 1 4 4 H 1.48500 * 109.46836 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47017 * 120.00216 * 3 2 1 6 6 H 1.48502 * 109.47249 * 239.99965 * 3 2 1 7 7 C 1.38813 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99777 * 151.16283 * 7 2 1 9 9 N 1.36937 * 120.00171 * 331.15485 * 7 2 1 10 10 C 1.50237 * 130.83483 * 343.12478 * 9 7 2 11 11 H 1.08997 * 115.86242 * 359.60648 * 10 9 7 12 12 C 1.55845 * 101.04737 * 233.92827 * 10 9 7 13 13 C 1.55479 * 103.32966 * 326.97778 * 12 10 9 14 14 C 1.50237 * 130.83769 * 162.78327 * 9 7 2 15 15 H 1.08991 * 115.86054 * 359.67964 * 14 9 7 16 16 C 1.56863 * 100.58374 * 234.63126 * 14 9 7 17 17 H 1.08995 * 111.03857 * 85.29984 * 16 14 9 18 18 N 1.46497 * 110.42970 * 208.30829 * 16 14 9 19 19 C 1.34773 * 120.00579 * 269.84926 * 18 16 14 20 20 O 1.21285 * 119.99422 * 0.02562 * 19 18 16 21 21 C 1.50692 * 120.00624 * 180.02562 * 19 18 16 22 22 C 1.52999 * 109.47330 * 180.35501 * 21 19 18 23 23 C 1.50705 * 115.54912 * 296.76896 * 22 21 19 24 24 C 1.38236 * 120.00022 * 118.23052 * 23 22 21 25 25 C 1.38232 * 119.99998 * 179.78992 * 24 23 22 26 26 C 1.38234 * 119.99931 * 0.44254 * 25 24 23 27 27 C 1.38243 * 120.00052 * 359.81072 * 26 25 24 28 28 C 1.38231 * 119.99610 * 359.97438 * 27 26 25 29 29 C 1.53001 * 117.50239 * 151.10472 * 22 21 19 30 30 C 1.52994 * 117.50084 * 82.44061 * 22 21 19 31 31 C 1.54851 * 103.35570 * 326.65955 * 16 14 9 32 32 H 0.97000 * 120.00400 * 184.57310 * 1 2 3 33 33 H 1.09006 * 110.62414 * 85.55766 * 12 10 9 34 34 H 1.09003 * 110.62518 * 208.57473 * 12 10 9 35 35 H 1.08995 * 110.60818 * 241.58135 * 13 12 10 36 36 H 1.09000 * 110.89409 * 118.54905 * 13 12 10 37 37 H 0.97008 * 120.00167 * 89.85827 * 18 16 14 38 38 H 1.09006 * 109.46967 * 300.35333 * 21 19 18 39 39 H 1.08997 * 109.47122 * 60.34950 * 21 19 18 40 40 H 1.07996 * 119.99504 * 0.02562 * 24 23 22 41 41 H 1.08000 * 120.00339 * 180.27236 * 25 24 23 42 42 H 1.08004 * 120.00115 * 179.83487 * 26 25 24 43 43 H 1.08003 * 119.99754 * 179.97438 * 27 26 25 44 44 H 1.08002 * 119.99372 * 179.97438 * 28 27 26 45 45 H 1.09003 * 117.49701 * 359.97438 * 29 22 21 46 46 H 1.08999 * 117.50261 * 145.01855 * 29 22 21 47 47 H 1.09006 * 117.49675 * 214.97884 * 30 22 21 48 48 H 1.09000 * 117.50073 * 359.97435 * 30 22 21 49 49 H 1.09004 * 110.62596 * 241.78859 * 31 16 14 50 50 H 1.08999 * 110.76355 * 118.82958 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7464 -0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 2.9898 -1.2600 -0.4517 9 7 1.4529 -2.3148 0.5711 10 6 0.3075 -2.4560 1.5329 11 1 -0.1695 -1.5266 1.8440 12 6 0.9746 -3.2837 2.6724 13 6 1.9917 -4.1827 1.9143 14 6 1.7945 -3.7704 0.4243 15 1 2.6193 -3.9995 -0.2503 16 6 0.4004 -4.3523 0.0017 17 1 0.2514 -4.2683 -1.0747 18 7 0.2773 -5.7476 0.4308 19 6 0.6728 -6.7420 -0.3884 20 8 1.1310 -6.4817 -1.4808 21 6 0.5456 -8.1773 0.0527 22 6 1.0698 -9.0984 -1.0508 23 6 0.3100 -9.0522 -2.3515 24 6 0.9463 -8.6463 -3.5096 25 6 0.2506 -8.6081 -4.7035 26 6 -1.0839 -8.9669 -4.7375 27 6 -1.7217 -9.3677 -3.5783 28 6 -1.0247 -9.4102 -2.3854 29 6 1.6620 -10.4437 -0.6262 30 6 2.5811 -9.3251 -1.1232 31 6 -0.6069 -3.4563 0.7635 32 1 -0.4851 -0.8373 0.0670 33 1 1.4881 -2.6264 3.3743 34 1 0.2333 -3.8939 3.1884 35 1 1.7523 -5.2365 2.0560 36 1 3.0114 -3.9748 2.2384 37 1 -0.0889 -5.9559 1.3046 38 1 1.1278 -8.3311 0.9613 39 1 -0.5019 -8.4055 0.2494 40 1 1.9881 -8.3628 -3.4823 41 1 0.7489 -8.2952 -5.6092 42 1 -1.6283 -8.9344 -5.6698 43 1 -2.7645 -9.6477 -3.6049 44 1 -1.5231 -9.7230 -1.4797 45 1 1.6786 -10.6724 0.4395 46 1 1.5024 -11.2952 -1.2877 47 1 3.0258 -9.4411 -2.1116 48 1 3.2021 -8.8177 -0.3850 49 1 -1.1982 -4.0502 1.4606 50 1 -1.2558 -2.9256 0.0668 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109383861.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:41 Heat of formation + Delta-G solvation = 60.730148 kcal Electronic energy + Delta-G solvation = -30190.714514 eV Core-core repulsion = 26377.694632 eV Total energy + Delta-G solvation = -3813.019882 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.38589 -39.59523 -38.27971 -36.90968 -33.92140 -32.49321 -31.00383 -30.56626 -30.03429 -29.04871 -28.99811 -27.19548 -23.96731 -23.30619 -23.10371 -21.84914 -21.64500 -20.75994 -19.68278 -19.30946 -18.65344 -17.61505 -17.10875 -16.70440 -15.75410 -15.47798 -14.99667 -14.92182 -14.78101 -14.58413 -14.21698 -13.95452 -13.67424 -13.51361 -13.36580 -12.96122 -12.69954 -12.41419 -12.27984 -12.14917 -11.84995 -11.64680 -11.64414 -11.28138 -11.15682 -11.06924 -11.01528 -10.76555 -10.58913 -10.55252 -10.21409 -10.11553 -10.08890 -9.94937 -9.59402 -9.44509 -9.40986 -8.86666 -8.64095 -8.54863 -8.35625 -6.95668 -6.19776 -3.09761 1.37055 1.46154 2.96448 3.31230 3.49606 3.53271 3.70096 3.71409 3.89130 4.42415 4.53195 4.57844 4.71243 4.78530 4.99917 5.00053 5.02254 5.13615 5.20686 5.31103 5.35020 5.40503 5.43582 5.45699 5.58761 5.62307 5.66112 5.71579 5.73442 5.78001 5.82194 5.92884 5.96289 5.96468 6.04805 6.08580 6.11755 6.12784 6.35857 6.44828 6.48663 6.54776 6.62219 6.68169 6.68815 6.75207 6.82721 7.03266 7.08699 7.13410 7.60204 7.87166 8.42974 8.59653 8.94880 9.78753 10.48330 11.24305 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015486 B = 0.002910 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.652239 B = 9620.217251 C =10299.562656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.028 4.028 3 Si 1.073 2.927 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.326 4.326 8 H 0.067 0.933 9 N -0.593 5.593 10 C 0.142 3.858 11 H 0.103 0.897 12 C -0.131 4.131 13 C -0.125 4.125 14 C 0.130 3.870 15 H 0.085 0.915 16 C 0.130 3.870 17 H 0.084 0.916 18 N -0.718 5.718 19 C 0.507 3.493 20 O -0.526 6.526 21 C -0.102 4.102 22 C -0.068 4.068 23 C -0.033 4.033 24 C -0.084 4.084 25 C -0.123 4.123 26 C -0.126 4.126 27 C -0.126 4.126 28 C -0.117 4.117 29 C -0.167 4.167 30 C -0.159 4.159 31 C -0.137 4.137 32 H 0.269 0.731 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.392 0.608 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.097 0.903 48 H 0.096 0.904 49 H 0.057 0.943 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.640 -22.218 0.818 22.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.230 4.230 3 Si 0.903 3.097 4 H -0.211 1.211 5 H -0.222 1.222 6 H -0.220 1.220 7 C -0.454 4.454 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.035 3.965 11 H 0.121 0.879 12 C -0.170 4.170 13 C -0.165 4.165 14 C 0.022 3.978 15 H 0.103 0.897 16 C 0.024 3.976 17 H 0.102 0.898 18 N -0.370 5.370 19 C 0.292 3.708 20 O -0.402 6.402 21 C -0.142 4.142 22 C -0.069 4.069 23 C -0.033 4.033 24 C -0.102 4.102 25 C -0.141 4.141 26 C -0.144 4.144 27 C -0.144 4.144 28 C -0.135 4.135 29 C -0.204 4.204 30 C -0.196 4.196 31 C -0.177 4.177 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.226 0.774 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.135 0.865 45 H 0.115 0.885 46 H 0.114 0.886 47 H 0.115 0.885 48 H 0.115 0.885 49 H 0.076 0.924 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.368 -20.142 -0.169 20.189 hybrid contribution -0.098 -1.705 0.463 1.769 sum -1.466 -21.847 0.294 21.898 Atomic orbital electron populations 1.70812 1.06372 1.30789 1.48097 1.25801 0.96515 1.01021 0.99636 0.83361 0.74656 0.75507 0.76174 1.21107 1.22169 1.22012 1.19707 1.00319 0.87161 1.38173 0.91566 1.46582 1.37021 0.99846 1.48092 1.22932 0.89072 0.95370 0.89156 0.87947 1.23029 0.97956 0.98140 0.97911 1.22943 0.98711 0.97400 0.97407 1.23402 0.94532 0.85851 0.94040 0.89694 1.22792 0.97794 0.77849 0.99196 0.89806 1.46263 1.64664 1.06774 1.19264 1.20429 0.78276 0.86915 0.85165 1.90713 1.43867 1.84474 1.21105 1.21215 1.03171 0.91905 0.97894 1.19650 0.95446 0.97791 0.93975 1.18841 0.93365 0.98403 0.92734 1.20981 1.00406 0.97076 0.91771 1.21136 0.94736 1.00217 0.98026 1.21101 0.94982 1.00104 0.98190 1.21037 0.99555 1.00893 0.92872 1.20883 0.93928 1.00827 0.97834 1.23141 1.03789 0.91846 1.01647 1.23009 0.92032 1.01530 1.03041 1.23204 0.97233 0.97889 0.99352 0.91894 0.92475 0.93120 0.92840 0.92797 0.77436 0.88827 0.88870 0.86042 0.86334 0.86495 0.86424 0.86540 0.88492 0.88628 0.88503 0.88536 0.92422 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.55 12.96 55.49 0.72 -26.84 16 2 C -0.03 -0.81 5.25 -17.43 -0.09 -0.90 16 3 Si 1.07 25.64 30.01 -169.99 -5.10 20.54 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.33 -9.28 10.36 -15.06 -0.16 -9.43 16 8 H 0.07 1.91 7.98 -52.48 -0.42 1.49 16 9 N -0.59 -14.84 2.81 -145.21 -0.41 -15.24 16 10 C 0.14 3.09 3.78 -62.80 -0.24 2.85 16 11 H 0.10 2.49 6.81 -51.93 -0.35 2.14 16 12 C -0.13 -2.34 6.49 -23.90 -0.16 -2.50 16 13 C -0.13 -2.20 6.37 -23.89 -0.15 -2.35 16 14 C 0.13 2.74 5.35 -62.23 -0.33 2.41 16 15 H 0.08 1.91 8.14 -51.93 -0.42 1.49 16 16 C 0.13 2.46 3.19 -64.87 -0.21 2.25 16 17 H 0.08 1.88 7.58 -51.93 -0.39 1.49 16 18 N -0.72 -10.35 3.76 -50.86 -0.19 -10.54 16 19 C 0.51 7.44 7.68 -10.99 -0.08 7.36 16 20 O -0.53 -9.83 14.21 5.55 0.08 -9.75 16 21 C -0.10 -1.05 5.47 -27.89 -0.15 -1.21 16 22 C -0.07 -0.74 1.30 -155.66 -0.20 -0.94 16 23 C -0.03 -0.42 4.22 -104.62 -0.44 -0.86 16 24 C -0.08 -1.12 8.43 -39.58 -0.33 -1.46 16 25 C -0.12 -1.52 10.05 -39.59 -0.40 -1.92 16 26 C -0.13 -1.43 10.05 -39.58 -0.40 -1.83 16 27 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 28 C -0.12 -1.34 9.55 -39.59 -0.38 -1.71 16 29 C -0.17 -1.41 9.94 -26.69 -0.27 -1.68 16 30 C -0.16 -1.63 9.46 -26.70 -0.25 -1.88 16 31 C -0.14 -2.59 6.07 -24.24 -0.15 -2.74 16 32 H 0.27 7.93 5.64 -40.82 -0.23 7.70 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.05 0.75 7.85 -51.93 -0.41 0.34 16 35 H 0.05 0.79 6.51 -51.93 -0.34 0.45 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.39 4.51 7.96 -40.82 -0.33 4.19 16 38 H 0.09 0.77 8.11 -51.93 -0.42 0.35 16 39 H 0.09 0.81 8.08 -51.93 -0.42 0.39 16 40 H 0.12 1.63 6.80 -52.49 -0.36 1.27 16 41 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 42 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 43 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 44 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 45 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.10 1.00 6.93 -51.93 -0.36 0.64 16 48 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.06 0.89 7.42 -51.93 -0.39 0.51 16 50 H 0.07 1.44 7.66 -51.93 -0.40 1.04 16 LS Contribution 394.52 15.07 5.95 5.95 Total: -1.00 -33.26 394.52 -11.57 -44.83 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -7.83 Total: 9.38 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -4.78 Total: -18.32 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.12 Total: -52.62 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.08 Total: -9.75 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.10 Total: 20.54 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.26 -11.57 -44.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109383861.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.562 kcal (2) G-P(sol) polarization free energy of solvation -33.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds