Wall clock time and date at job start Sat Apr 11 2020 06:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00009 * 2 1 4 4 H 1.48500 * 109.46836 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47017 * 120.00216 * 3 2 1 6 6 H 1.48502 * 109.47249 * 239.99965 * 3 2 1 7 7 C 1.38813 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99777 * 151.16283 * 7 2 1 9 9 N 1.36937 * 120.00171 * 331.15485 * 7 2 1 10 10 C 1.50237 * 130.83483 * 343.12478 * 9 7 2 11 11 H 1.08997 * 115.86242 * 359.60648 * 10 9 7 12 12 C 1.55845 * 101.04737 * 233.92827 * 10 9 7 13 13 C 1.55479 * 103.32966 * 326.97778 * 12 10 9 14 14 C 1.50237 * 130.83769 * 162.78327 * 9 7 2 15 15 H 1.08991 * 115.86054 * 359.67964 * 14 9 7 16 16 C 1.56863 * 100.58374 * 234.63126 * 14 9 7 17 17 H 1.08995 * 111.03857 * 85.29984 * 16 14 9 18 18 N 1.46497 * 110.42970 * 208.30829 * 16 14 9 19 19 C 1.34773 * 120.00579 * 269.84926 * 18 16 14 20 20 O 1.21285 * 119.99422 * 0.02562 * 19 18 16 21 21 C 1.50692 * 120.00624 * 180.02562 * 19 18 16 22 22 C 1.52999 * 109.47330 * 180.35501 * 21 19 18 23 23 C 1.50705 * 115.54912 * 296.76896 * 22 21 19 24 24 C 1.38236 * 120.00022 * 118.23052 * 23 22 21 25 25 C 1.38232 * 119.99998 * 179.78992 * 24 23 22 26 26 C 1.38234 * 119.99931 * 0.44254 * 25 24 23 27 27 C 1.38243 * 120.00052 * 359.81072 * 26 25 24 28 28 C 1.38231 * 119.99610 * 359.97438 * 27 26 25 29 29 C 1.53001 * 117.50239 * 151.10472 * 22 21 19 30 30 C 1.52994 * 117.50084 * 82.44061 * 22 21 19 31 31 C 1.54851 * 103.35570 * 326.65955 * 16 14 9 32 32 H 0.97000 * 120.00400 * 184.57310 * 1 2 3 33 33 H 1.09006 * 110.62414 * 85.55766 * 12 10 9 34 34 H 1.09003 * 110.62518 * 208.57473 * 12 10 9 35 35 H 1.08995 * 110.60818 * 241.58135 * 13 12 10 36 36 H 1.09000 * 110.89409 * 118.54905 * 13 12 10 37 37 H 0.97008 * 120.00167 * 89.85827 * 18 16 14 38 38 H 1.09006 * 109.46967 * 300.35333 * 21 19 18 39 39 H 1.08997 * 109.47122 * 60.34950 * 21 19 18 40 40 H 1.07996 * 119.99504 * 0.02562 * 24 23 22 41 41 H 1.08000 * 120.00339 * 180.27236 * 25 24 23 42 42 H 1.08004 * 120.00115 * 179.83487 * 26 25 24 43 43 H 1.08003 * 119.99754 * 179.97438 * 27 26 25 44 44 H 1.08002 * 119.99372 * 179.97438 * 28 27 26 45 45 H 1.09003 * 117.49701 * 359.97438 * 29 22 21 46 46 H 1.08999 * 117.50261 * 145.01855 * 29 22 21 47 47 H 1.09006 * 117.49675 * 214.97884 * 30 22 21 48 48 H 1.09000 * 117.50073 * 359.97435 * 30 22 21 49 49 H 1.09004 * 110.62596 * 241.78859 * 31 16 14 50 50 H 1.08999 * 110.76355 * 118.82958 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7464 -0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 2.9898 -1.2600 -0.4517 9 7 1.4529 -2.3148 0.5711 10 6 0.3075 -2.4560 1.5329 11 1 -0.1695 -1.5266 1.8440 12 6 0.9746 -3.2837 2.6724 13 6 1.9917 -4.1827 1.9143 14 6 1.7945 -3.7704 0.4243 15 1 2.6193 -3.9995 -0.2503 16 6 0.4004 -4.3523 0.0017 17 1 0.2514 -4.2683 -1.0747 18 7 0.2773 -5.7476 0.4308 19 6 0.6728 -6.7420 -0.3884 20 8 1.1310 -6.4817 -1.4808 21 6 0.5456 -8.1773 0.0527 22 6 1.0698 -9.0984 -1.0508 23 6 0.3100 -9.0522 -2.3515 24 6 0.9463 -8.6463 -3.5096 25 6 0.2506 -8.6081 -4.7035 26 6 -1.0839 -8.9669 -4.7375 27 6 -1.7217 -9.3677 -3.5783 28 6 -1.0247 -9.4102 -2.3854 29 6 1.6620 -10.4437 -0.6262 30 6 2.5811 -9.3251 -1.1232 31 6 -0.6069 -3.4563 0.7635 32 1 -0.4851 -0.8373 0.0670 33 1 1.4881 -2.6264 3.3743 34 1 0.2333 -3.8939 3.1884 35 1 1.7523 -5.2365 2.0560 36 1 3.0114 -3.9748 2.2384 37 1 -0.0889 -5.9559 1.3046 38 1 1.1278 -8.3311 0.9613 39 1 -0.5019 -8.4055 0.2494 40 1 1.9881 -8.3628 -3.4823 41 1 0.7489 -8.2952 -5.6092 42 1 -1.6283 -8.9344 -5.6698 43 1 -2.7645 -9.6477 -3.6049 44 1 -1.5231 -9.7230 -1.4797 45 1 1.6786 -10.6724 0.4395 46 1 1.5024 -11.2952 -1.2877 47 1 3.0258 -9.4411 -2.1116 48 1 3.2021 -8.8177 -0.3850 49 1 -1.1982 -4.0502 1.4606 50 1 -1.2558 -2.9256 0.0668 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109383861.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:40 Heat of formation + Delta-G solvation = 42.769588 kcal Electronic energy + Delta-G solvation = -30191.493342 eV Core-core repulsion = 26377.694632 eV Total energy + Delta-G solvation = -3813.798710 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.60770 -40.79048 -39.50597 -37.78399 -35.51493 -34.33869 -31.89033 -31.41586 -31.25982 -30.86186 -30.39181 -28.67801 -25.91819 -24.24726 -23.88699 -23.07257 -22.63205 -22.12912 -21.36892 -20.36619 -20.06670 -19.51765 -18.09036 -17.83316 -16.95205 -16.71302 -16.43709 -16.13765 -15.85533 -15.64694 -15.54640 -15.38457 -15.04977 -14.81280 -14.63213 -14.24902 -13.89554 -13.57747 -13.53534 -13.44780 -13.11841 -12.92281 -12.85152 -12.64244 -12.52215 -12.38435 -12.36429 -12.00810 -11.94985 -11.88117 -11.80637 -11.67638 -11.44262 -11.38753 -11.02131 -10.91098 -10.61745 -10.51241 -9.96022 -9.76715 -9.46131 -8.94768 -8.44803 -5.27889 0.49345 0.55658 1.53797 1.61836 1.81138 1.83165 2.20534 2.60206 2.82458 3.03046 3.16906 3.36571 3.65981 3.76325 3.79882 3.88044 3.92270 3.97829 4.01899 4.16166 4.19070 4.25449 4.29657 4.31962 4.43138 4.46469 4.56429 4.60297 4.64638 4.66393 4.75033 4.80458 4.84166 4.87228 4.92024 4.95268 4.99676 5.06803 5.09650 5.18403 5.23389 5.28957 5.31083 5.32489 5.44990 5.60626 5.61811 5.64989 5.71209 5.79075 6.17050 6.28572 6.74673 6.81896 7.47776 7.65313 8.43188 9.02573 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015486 B = 0.002910 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.652239 B = 9620.217251 C =10299.562656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.078 4.078 3 Si 1.120 2.880 4 H -0.288 1.288 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.337 4.337 8 H 0.049 0.951 9 N -0.626 5.626 10 C 0.131 3.869 11 H 0.069 0.931 12 C -0.117 4.117 13 C -0.108 4.108 14 C 0.119 3.881 15 H 0.055 0.945 16 C 0.151 3.849 17 H 0.037 0.963 18 N -0.704 5.704 19 C 0.501 3.499 20 O -0.573 6.573 21 C -0.091 4.091 22 C -0.084 4.084 23 C -0.044 4.044 24 C -0.111 4.111 25 C -0.142 4.142 26 C -0.138 4.138 27 C -0.130 4.130 28 C -0.124 4.124 29 C -0.135 4.135 30 C -0.177 4.177 31 C -0.123 4.123 32 H 0.261 0.739 33 H 0.048 0.952 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.047 0.953 37 H 0.414 0.586 38 H 0.128 0.872 39 H 0.121 0.879 40 H 0.105 0.895 41 H 0.123 0.877 42 H 0.136 0.864 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.125 0.875 46 H 0.097 0.903 47 H 0.082 0.918 48 H 0.096 0.904 49 H 0.106 0.894 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.732 -25.114 3.768 25.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.274 4.274 3 Si 0.945 3.055 4 H -0.214 1.214 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.465 4.465 8 H 0.067 0.933 9 N -0.350 5.350 10 C 0.024 3.976 11 H 0.087 0.913 12 C -0.156 4.156 13 C -0.147 4.147 14 C 0.011 3.989 15 H 0.074 0.926 16 C 0.043 3.957 17 H 0.055 0.945 18 N -0.357 5.357 19 C 0.289 3.711 20 O -0.451 6.451 21 C -0.130 4.130 22 C -0.085 4.085 23 C -0.044 4.044 24 C -0.130 4.130 25 C -0.160 4.160 26 C -0.155 4.155 27 C -0.148 4.148 28 C -0.141 4.141 29 C -0.172 4.172 30 C -0.214 4.214 31 C -0.162 4.162 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.066 0.934 37 H 0.252 0.748 38 H 0.146 0.854 39 H 0.139 0.861 40 H 0.123 0.877 41 H 0.141 0.859 42 H 0.154 0.846 43 H 0.161 0.839 44 H 0.160 0.840 45 H 0.143 0.857 46 H 0.116 0.884 47 H 0.101 0.899 48 H 0.115 0.885 49 H 0.124 0.876 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.465 -23.109 2.823 23.411 hybrid contribution 0.272 -0.877 -0.564 1.078 sum -2.193 -23.986 2.259 24.192 Atomic orbital electron populations 1.70902 1.07144 1.30343 1.50663 1.27101 0.96648 1.04109 0.99571 0.82746 0.73765 0.71864 0.77109 1.21404 1.20569 1.20736 1.19877 0.99776 0.89071 1.37804 0.93336 1.46840 1.38227 1.00651 1.49290 1.23033 0.88709 0.95362 0.90467 0.91276 1.22961 0.98494 0.97838 0.96279 1.22839 0.98578 0.99565 0.93747 1.23528 0.94718 0.84303 0.96304 0.92629 1.22103 0.96350 0.80647 0.96602 0.94467 1.45978 1.64825 1.04547 1.20370 1.21374 0.76721 0.88668 0.84305 1.90723 1.45685 1.85355 1.23334 1.21266 1.05527 0.87616 0.98583 1.19746 0.95259 0.99829 0.93660 1.19120 0.94152 0.97963 0.93128 1.21056 1.00092 0.98715 0.93087 1.21356 0.95666 1.00843 0.98169 1.21397 0.94631 0.99981 0.99530 1.21431 1.00798 0.99976 0.92605 1.21221 0.93549 1.00391 0.98984 1.23207 1.00346 0.90467 1.03159 1.23017 0.92198 1.03544 1.02686 1.23061 0.96598 0.97386 0.99193 0.92859 0.93326 0.88293 0.88721 0.93386 0.74817 0.85445 0.86080 0.87705 0.85882 0.84647 0.83905 0.83959 0.85695 0.88426 0.89944 0.88508 0.87586 0.94397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.98 12.96 21.65 0.28 -58.70 16 2 C -0.08 -4.64 5.25 84.86 0.45 -4.19 16 3 Si 1.12 53.14 30.01 68.60 2.06 55.19 16 4 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.34 -20.02 10.36 84.03 0.87 -19.15 16 8 H 0.05 2.95 7.98 -2.91 -0.02 2.93 16 9 N -0.63 -32.35 2.81 -613.33 -1.72 -34.07 16 10 C 0.13 5.66 3.78 46.23 0.17 5.84 16 11 H 0.07 3.46 6.81 -2.39 -0.02 3.44 16 12 C -0.12 -3.82 6.49 32.43 0.21 -3.61 16 13 C -0.11 -3.51 6.37 32.43 0.21 -3.30 16 14 C 0.12 5.08 5.35 46.60 0.25 5.33 16 15 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 16 C 0.15 5.69 3.19 46.98 0.15 5.84 16 17 H 0.04 1.76 7.58 -2.39 -0.02 1.74 16 18 N -0.70 -18.23 3.76 -433.21 -1.63 -19.86 16 19 C 0.50 13.69 7.68 87.66 0.67 14.36 16 20 O -0.57 -21.77 14.21 -3.05 -0.04 -21.81 16 21 C -0.09 -1.48 5.47 29.85 0.16 -1.32 16 22 C -0.08 -1.62 1.30 -52.93 -0.07 -1.69 16 23 C -0.04 -1.04 4.22 -19.86 -0.08 -1.13 16 24 C -0.11 -3.11 8.43 22.27 0.19 -2.92 16 25 C -0.14 -3.68 10.05 22.27 0.22 -3.46 16 26 C -0.14 -3.08 10.05 22.27 0.22 -2.86 16 27 C -0.13 -2.65 10.05 22.27 0.22 -2.43 16 28 C -0.12 -2.55 9.55 22.27 0.21 -2.34 16 29 C -0.14 -1.81 9.94 30.62 0.30 -1.51 16 30 C -0.18 -3.43 9.46 30.62 0.29 -3.14 16 31 C -0.12 -4.54 6.07 32.21 0.20 -4.34 16 32 H 0.26 16.11 5.64 -92.71 -0.52 15.59 16 33 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.10 2.33 7.85 -2.39 -0.02 2.31 16 35 H 0.09 2.29 6.51 -2.39 -0.02 2.28 16 36 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.41 7.21 7.96 -92.70 -0.74 6.47 16 38 H 0.13 1.30 8.11 -2.38 -0.02 1.28 16 39 H 0.12 1.39 8.08 -2.39 -0.02 1.37 16 40 H 0.10 3.12 6.80 -2.91 -0.02 3.10 16 41 H 0.12 2.84 8.06 -2.91 -0.02 2.82 16 42 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 43 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 44 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 45 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.08 1.79 6.93 -2.38 -0.02 1.77 16 48 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.11 2.85 7.42 -2.38 -0.02 2.84 16 50 H 0.04 1.62 7.66 -2.39 -0.02 1.61 16 Total: -1.00 -80.11 394.52 4.24 -75.87 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 0.45 Total: 29.40 kcal Atomic # 6 Polarization: -30.87 SS G_CDS: 4.85 Total: -26.01 kcal Atomic # 7 Polarization: -109.56 SS G_CDS: -3.07 Total: -112.63 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.04 Total: -21.81 kcal Atomic # 14 Polarization: 53.14 SS G_CDS: 2.06 Total: 55.19 kcal Total: -80.11 4.24 -75.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109383861.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.636 kcal (2) G-P(sol) polarization free energy of solvation -80.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds