Wall clock time and date at job start Sat Apr 11 2020 06:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00145 * 2 1 4 4 H 1.48498 * 109.47406 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46697 * 299.99866 * 3 2 1 6 6 H 1.48494 * 109.47193 * 59.99633 * 3 2 1 7 7 C 1.38811 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00806 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99613 * 0.02562 * 7 2 1 10 10 C 1.50242 * 130.83891 * 0.02562 * 9 7 2 11 11 H 1.08993 * 115.85909 * 359.63094 * 10 9 7 12 12 C 1.55848 * 101.05095 * 233.94943 * 10 9 7 13 13 C 1.54860 * 103.44576 * 327.06628 * 12 10 9 14 14 C 1.50244 * 130.83727 * 180.02562 * 9 7 2 15 15 H 1.08996 * 115.85947 * 359.65065 * 14 9 7 16 16 C 1.55854 * 101.04586 * 233.98302 * 14 9 7 17 17 H 1.09004 * 110.62528 * 85.70935 * 16 14 9 18 18 N 1.46495 * 110.62181 * 208.57062 * 16 14 9 19 19 C 1.34780 * 120.00087 * 272.13283 * 18 16 14 20 20 O 1.21280 * 119.99739 * 359.97438 * 19 18 16 21 21 C 1.50697 * 119.99929 * 180.02562 * 19 18 16 22 22 C 1.50704 * 109.47204 * 179.97438 * 21 19 18 23 23 C 1.30998 * 119.99856 * 126.34225 * 22 21 19 24 24 C 1.50699 * 120.00250 * 7.59619 * 23 22 21 25 25 C 1.50695 * 109.47742 * 127.69551 * 24 23 22 26 26 C 1.38233 * 119.99785 * 269.72572 * 25 24 23 27 27 C 1.38239 * 119.99940 * 180.34189 * 26 25 24 28 28 C 1.38233 * 119.99760 * 359.90678 * 27 26 25 29 29 C 1.38234 * 120.00474 * 0.04941 * 28 27 26 30 30 C 1.38231 * 119.99847 * 89.99628 * 25 24 23 31 31 C 1.54852 * 103.44445 * 327.06085 * 16 14 9 32 32 H 0.97001 * 120.00411 * 0.02562 * 1 2 3 33 33 H 1.08996 * 110.62350 * 85.55331 * 12 10 9 34 34 H 1.08997 * 110.62615 * 208.41503 * 12 10 9 35 35 H 1.09003 * 110.62396 * 241.50711 * 13 12 10 36 36 H 1.08998 * 110.62257 * 118.49093 * 13 12 10 37 37 H 0.96997 * 120.00051 * 92.13691 * 18 16 14 38 38 H 1.08994 * 109.47590 * 60.00153 * 21 19 18 39 39 H 1.08998 * 109.47487 * 299.99820 * 21 19 18 40 40 H 1.08000 * 120.00176 * 306.35644 * 22 21 19 41 41 H 1.08005 * 119.99881 * 187.58259 * 23 22 21 42 42 H 1.09001 * 109.47200 * 7.68905 * 24 23 22 43 43 H 1.09004 * 109.47000 * 247.69640 * 24 23 22 44 44 H 1.08002 * 120.00210 * 0.27706 * 26 25 24 45 45 H 1.07994 * 119.99933 * 179.97438 * 27 26 25 46 46 H 1.08004 * 120.00152 * 180.02562 * 28 27 26 47 47 H 1.07995 * 120.00182 * 180.02562 * 29 28 27 48 48 H 1.08001 * 120.00644 * 359.70437 * 30 25 24 49 49 H 1.09000 * 110.62321 * 118.49088 * 31 16 14 50 50 H 1.09001 * 110.62254 * 241.51464 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1501 -2.6705 -0.0005 11 1 -0.8014 -1.7967 0.0049 12 6 -0.2752 -3.6103 1.2365 13 6 1.0660 -4.3845 1.2376 14 6 1.8187 -3.8072 0.0016 15 1 2.9012 -3.9344 -0.0035 16 6 1.0680 -4.3851 -1.2360 17 1 1.6281 -4.1897 -2.1505 18 7 0.8341 -5.8220 -1.0730 19 6 1.7684 -6.7067 -1.4743 20 8 2.8025 -6.3131 -1.9709 21 6 1.5276 -8.1849 -1.3071 22 6 2.7154 -8.9499 -1.8315 23 6 3.3157 -9.8303 -1.0696 24 6 2.7205 -10.2035 0.2637 25 6 2.5950 -11.7024 0.3560 26 6 1.4371 -12.3264 -0.0690 27 6 1.3192 -13.7008 0.0223 28 6 2.3599 -14.4511 0.5368 29 6 3.5182 -13.8271 0.9609 30 6 3.6356 -12.4526 0.8709 31 6 -0.2730 -3.6108 -1.2376 32 1 -0.4851 0.8400 -0.0004 33 1 -0.3832 -3.0280 2.1516 34 1 -1.1158 -4.2936 1.1161 35 1 0.8921 -5.4538 1.1166 36 1 1.6229 -4.1862 2.1534 37 1 0.0069 -6.1368 -0.6762 38 1 0.6359 -8.4730 -1.8637 39 1 1.3858 -8.4127 -0.2507 40 1 3.0718 -8.7721 -2.8354 41 1 4.2371 -10.2889 -1.3970 42 1 1.7343 -9.7496 0.3612 43 1 3.3671 -9.8431 1.0638 44 1 0.6242 -11.7402 -0.4714 45 1 0.4144 -14.1883 -0.3094 46 1 2.2680 -15.5249 0.6077 47 1 4.3315 -14.4134 1.3625 48 1 4.5404 -11.9651 1.2026 49 1 -0.3794 -3.0290 -2.1531 50 1 -1.1121 -4.2960 -1.1170 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109419338.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:46 Heat of formation + Delta-G solvation = 35.013850 kcal Electronic energy + Delta-G solvation = -28720.006008 eV Core-core repulsion = 24905.870983 eV Total energy + Delta-G solvation = -3814.135024 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.45710 -40.22220 -39.76435 -36.80597 -35.40676 -34.19248 -32.91046 -31.69222 -31.01499 -30.83784 -29.89063 -28.54443 -26.81799 -26.00378 -23.39393 -22.94494 -22.34422 -22.06975 -21.20888 -20.16199 -19.31858 -18.89711 -18.15734 -17.61463 -16.97840 -16.81248 -16.64279 -16.14421 -15.99784 -15.89242 -15.56262 -15.30561 -14.75043 -14.58705 -14.22805 -14.12632 -13.97914 -13.75573 -13.48926 -13.45145 -13.23433 -13.00414 -12.85788 -12.80805 -12.69712 -12.56564 -12.35011 -11.98732 -11.91540 -11.88475 -11.86212 -11.62033 -11.53291 -11.17695 -11.04699 -10.77660 -10.76270 -9.97043 -9.84426 -9.74785 -9.52000 -8.85207 -7.80474 -5.19456 0.49881 0.57214 1.27569 1.44928 1.45555 1.55308 1.77732 2.36441 2.53033 2.95413 3.32949 3.53546 3.80674 3.92035 3.99587 4.01901 4.09882 4.12701 4.17404 4.22873 4.32685 4.35909 4.40275 4.45746 4.50395 4.56743 4.63505 4.68852 4.73113 4.74642 4.83510 4.85035 4.93407 4.99841 5.09075 5.12985 5.16736 5.20391 5.24999 5.27781 5.34744 5.48185 5.57529 5.64147 5.69843 5.71758 5.78187 5.79385 5.90418 5.92347 6.20868 6.28374 6.74091 7.05654 7.43823 7.68760 8.54920 9.26448 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.025247 B = 0.001933 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.762181 B =14481.836928 C =14598.133470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.065 4.065 3 Si 0.975 3.025 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.223 4.223 8 H 0.069 0.931 9 N -0.620 5.620 10 C 0.136 3.864 11 H 0.120 0.880 12 C -0.125 4.125 13 C -0.114 4.114 14 C 0.117 3.883 15 H 0.061 0.939 16 C 0.146 3.854 17 H 0.047 0.953 18 N -0.700 5.700 19 C 0.509 3.491 20 O -0.592 6.592 21 C -0.110 4.110 22 C -0.144 4.144 23 C -0.146 4.146 24 C -0.061 4.061 25 C -0.083 4.083 26 C -0.126 4.126 27 C -0.128 4.128 28 C -0.137 4.137 29 C -0.130 4.130 30 C -0.133 4.133 31 C -0.125 4.125 32 H 0.249 0.751 33 H 0.033 0.967 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.040 0.960 37 H 0.416 0.584 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.135 0.865 45 H 0.138 0.862 46 H 0.136 0.864 47 H 0.134 0.866 48 H 0.127 0.873 49 H 0.043 0.957 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.014 -29.348 1.524 29.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.257 4.257 3 Si 0.804 3.196 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.352 4.352 8 H 0.087 0.913 9 N -0.342 5.342 10 C 0.031 3.969 11 H 0.137 0.863 12 C -0.164 4.164 13 C -0.154 4.154 14 C 0.009 3.991 15 H 0.080 0.920 16 C 0.039 3.961 17 H 0.066 0.934 18 N -0.352 5.352 19 C 0.297 3.703 20 O -0.472 6.472 21 C -0.148 4.148 22 C -0.163 4.163 23 C -0.164 4.164 24 C -0.097 4.097 25 C -0.083 4.083 26 C -0.144 4.144 27 C -0.146 4.146 28 C -0.155 4.155 29 C -0.148 4.148 30 C -0.151 4.151 31 C -0.165 4.165 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.059 0.941 37 H 0.254 0.746 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.117 0.883 41 H 0.127 0.873 42 H 0.117 0.883 43 H 0.101 0.899 44 H 0.153 0.847 45 H 0.156 0.844 46 H 0.154 0.846 47 H 0.152 0.848 48 H 0.145 0.855 49 H 0.062 0.938 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.251 -28.746 1.177 28.797 hybrid contribution 0.642 1.330 -0.100 1.480 sum -0.609 -27.415 1.077 27.443 Atomic orbital electron populations 1.69668 1.05804 1.24972 1.58851 1.25409 0.96604 1.00159 1.03578 0.85046 0.77826 0.79893 0.76795 1.19997 1.21895 1.21723 1.19320 0.90422 0.83671 1.41796 0.91303 1.46770 1.03168 0.99504 1.84786 1.23706 0.85814 0.95538 0.91881 0.86294 1.22948 0.97012 0.98007 0.98468 1.22797 0.96368 0.99518 0.96680 1.23329 0.95628 0.84795 0.95327 0.92038 1.22018 0.96990 0.79672 0.97424 0.93438 1.45997 1.21392 1.05110 1.62720 1.21300 0.82730 0.89723 0.76546 1.90697 1.28717 1.81736 1.46100 1.20930 1.00135 0.88045 1.05727 1.22349 0.97446 0.96929 0.99563 1.22683 0.98941 0.98925 0.95893 1.19893 1.02767 0.91429 0.95646 1.19902 0.94515 0.95411 0.98507 1.21319 0.97897 0.95207 0.99939 1.21450 0.99611 0.94162 0.99383 1.21453 0.93851 1.00893 0.99270 1.21416 0.98596 0.94778 0.99993 1.21310 0.98972 0.94504 1.00353 1.23115 0.95550 0.98215 0.99589 0.94133 0.94791 0.89133 0.89007 0.94145 0.74595 0.85154 0.85328 0.88280 0.87284 0.88257 0.89912 0.84675 0.84443 0.84582 0.84772 0.85545 0.93845 0.88241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.05 10.46 21.65 0.23 -54.82 16 2 C -0.06 -3.69 5.50 84.86 0.47 -3.23 16 3 Si 0.98 46.69 29.55 68.60 2.03 48.72 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 6 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 7 C -0.22 -12.79 10.59 84.03 0.89 -11.90 16 8 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 9 N -0.62 -31.67 2.99 -615.23 -1.84 -33.51 16 10 C 0.14 6.07 4.72 46.24 0.22 6.29 16 11 H 0.12 6.23 5.52 -2.39 -0.01 6.21 16 12 C -0.13 -4.46 6.44 32.21 0.21 -4.25 16 13 C -0.11 -3.90 6.32 32.20 0.20 -3.69 16 14 C 0.12 4.93 5.35 46.22 0.25 5.17 16 15 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 16 C 0.15 5.31 3.11 46.61 0.14 5.46 16 17 H 0.05 2.06 7.64 -2.38 -0.02 2.04 16 18 N -0.70 -17.64 3.66 -434.90 -1.59 -19.24 16 19 C 0.51 13.64 7.82 87.66 0.69 14.33 16 20 O -0.59 -22.59 15.73 -3.03 -0.05 -22.64 16 21 C -0.11 -1.77 5.80 29.10 0.17 -1.60 16 22 C -0.14 -2.83 8.75 25.65 0.22 -2.61 16 23 C -0.15 -2.55 9.49 25.65 0.24 -2.30 16 24 C -0.06 -0.85 5.43 29.10 0.16 -0.69 16 25 C -0.08 -1.24 5.12 -19.87 -0.10 -1.34 16 26 C -0.13 -1.71 9.70 22.27 0.22 -1.49 16 27 C -0.13 -1.61 10.05 22.27 0.22 -1.39 16 28 C -0.14 -1.71 10.05 22.27 0.22 -1.49 16 29 C -0.13 -1.74 10.05 22.27 0.22 -1.52 16 30 C -0.13 -1.99 9.70 22.27 0.22 -1.77 16 31 C -0.13 -4.52 6.20 32.22 0.20 -4.32 16 32 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 33 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.09 2.41 7.82 -2.39 -0.02 2.39 16 35 H 0.09 2.36 6.44 -2.39 -0.02 2.35 16 36 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.42 7.08 7.97 -92.71 -0.74 6.34 16 38 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.13 1.44 5.28 -2.39 -0.01 1.43 16 40 H 0.10 2.27 8.06 -2.91 -0.02 2.25 16 41 H 0.11 1.93 8.06 -2.91 -0.02 1.91 16 42 H 0.10 1.06 5.25 -2.39 -0.01 1.05 16 43 H 0.08 1.16 8.09 -2.38 -0.02 1.14 16 44 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 45 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 46 H 0.14 1.13 8.06 -2.91 -0.02 1.10 16 47 H 0.13 1.29 8.06 -2.91 -0.02 1.26 16 48 H 0.13 1.63 8.06 -2.91 -0.02 1.60 16 49 H 0.04 1.74 8.14 -2.39 -0.02 1.73 16 50 H 0.10 2.66 7.36 -2.39 -0.02 2.64 16 Total: -1.00 -74.16 398.52 4.03 -70.12 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.20 Total: 23.72 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 5.06 Total: -12.35 kcal Atomic # 7 Polarization: -104.36 SS G_CDS: -3.20 Total: -107.56 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.05 Total: -22.64 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -74.16 4.03 -70.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109419338.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.135 kcal (2) G-P(sol) polarization free energy of solvation -74.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds