Wall clock time and date at job start Sat Apr 11 2020 06:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42906 * 113.99964 * 2 1 4 4 C 1.53000 * 109.46979 * 179.97438 * 3 2 1 5 5 O 1.42896 * 109.47438 * 65.00390 * 4 3 2 6 6 C 1.42898 * 114.00551 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47374 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.47275 * 175.00013 * 7 6 5 9 9 C 1.52999 * 109.47278 * 54.99854 * 7 6 5 10 10 N 1.46507 * 109.47148 * 295.00072 * 7 6 5 11 11 C 1.34775 * 119.99876 * 205.00307 * 10 7 6 12 12 O 1.21593 * 120.00151 * 359.97438 * 11 10 7 13 13 N 1.34777 * 119.99585 * 179.97438 * 11 10 7 14 14 C 1.40203 * 119.99577 * 179.72010 * 13 11 10 15 15 C 1.40396 * 125.97476 * 359.97438 * 14 13 11 16 16 C 1.35236 * 107.86738 * 179.82666 * 15 14 13 17 17 C 1.50704 * 126.07213 * 180.15651 * 16 15 14 18 18 N 1.34959 * 107.86036 * 0.42841 * 16 15 14 19 19 C 1.46499 * 125.98046 * 179.73175 * 18 16 15 20 20 C 1.50705 * 109.47270 * 269.97351 * 19 18 16 21 21 H 1.08001 * 119.99426 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00136 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00005 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99620 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47101 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46834 * 119.99986 * 24 22 20 27 27 H 1.48499 * 109.47115 * 240.00028 * 24 22 20 28 28 N 1.31212 * 125.97054 * 180.29973 * 14 13 11 29 29 H 1.08998 * 109.47428 * 300.00156 * 1 2 3 30 30 H 1.09007 * 109.46763 * 60.00303 * 1 2 3 31 31 H 1.09002 * 109.46648 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46685 * 59.99989 * 3 2 1 33 33 H 1.09000 * 109.47332 * 299.99871 * 3 2 1 34 34 H 1.09004 * 109.47245 * 304.99986 * 4 3 2 35 35 H 1.09004 * 109.46633 * 185.00202 * 4 3 2 36 36 H 1.08999 * 109.46588 * 59.99858 * 6 5 4 37 37 H 1.09000 * 109.46642 * 300.00181 * 6 5 4 38 38 H 1.09003 * 109.46809 * 300.00301 * 9 7 6 39 39 H 1.09003 * 109.47054 * 59.99916 * 9 7 6 40 40 H 1.08996 * 109.47245 * 180.02562 * 9 7 6 41 41 H 0.97000 * 119.99601 * 24.99646 * 10 7 6 42 42 H 0.97001 * 120.00485 * 0.02562 * 13 11 10 43 43 H 1.08002 * 126.06274 * 359.97438 * 15 14 13 44 44 H 1.09002 * 109.47194 * 270.32264 * 17 16 15 45 45 H 1.09003 * 109.46867 * 30.31656 * 17 16 15 46 46 H 1.08995 * 109.47646 * 150.31612 * 17 16 15 47 47 H 1.09006 * 109.47055 * 29.97327 * 19 18 16 48 48 H 1.08997 * 109.47616 * 149.97083 * 19 18 16 49 49 H 0.97004 * 119.99448 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9659 0.5793 -1.2201 6 6 5.3823 0.4198 -1.3220 7 6 5.7267 -0.2349 -2.6613 8 1 6.8096 -0.2759 -2.7778 9 6 5.1217 0.5868 -3.8013 10 7 5.1801 -1.5938 -2.6954 11 6 5.7405 -2.5257 -3.4917 12 8 6.6993 -2.2385 -4.1821 13 7 5.2380 -3.7759 -3.5227 14 6 5.8172 -4.7437 -4.3555 15 6 6.9177 -4.5487 -5.2051 16 6 7.1701 -5.7197 -5.8326 17 6 8.2678 -5.9712 -6.8342 18 7 6.2608 -6.6217 -5.4072 19 6 6.1673 -8.0187 -5.8384 20 6 5.2616 -8.1143 -7.0391 21 1 4.8020 -7.2234 -7.4410 22 6 5.0206 -9.3389 -7.6250 23 7 5.5815 -10.4234 -7.1364 24 14 3.8973 -9.4573 -9.1129 25 1 3.3968 -8.1041 -9.4642 26 1 4.6541 -10.0182 -10.2610 27 1 2.7487 -10.3439 -8.7966 28 7 5.4218 -5.9884 -4.4815 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8508 0.5685 0.8427 35 1 3.9784 2.1766 0.0903 36 1 5.7362 -0.2120 -0.5074 37 1 5.8632 1.3960 -1.2600 38 1 4.0387 0.6277 -3.6847 39 1 5.5283 1.5979 -3.7759 40 1 5.3667 0.1201 -4.7553 41 1 4.4151 -1.8228 -2.1448 42 1 4.4728 -4.0049 -2.9722 43 1 7.4669 -3.6275 -5.3329 44 1 7.9008 -5.7544 -7.8375 45 1 9.1179 -5.3265 -6.6111 46 1 8.5785 -7.0144 -6.7786 47 1 7.1597 -8.3848 -6.1017 48 1 5.7606 -8.6228 -5.0274 49 1 5.4116 -11.2850 -7.5485 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348207564.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:27 Heat of formation + Delta-G solvation = -43.048001 kcal Electronic energy + Delta-G solvation = -29205.242594 eV Core-core repulsion = 24976.873290 eV Total energy + Delta-G solvation = -4228.369303 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.69754 -39.73505 -38.84375 -37.75025 -35.53517 -34.54655 -33.33831 -31.77816 -31.08704 -30.64700 -29.95227 -26.88767 -26.57457 -26.38121 -26.23017 -23.28935 -23.00624 -22.16257 -20.76103 -19.81739 -19.50128 -17.75705 -17.45014 -17.21817 -16.64030 -16.38976 -15.91647 -15.76596 -15.71909 -15.26124 -15.24383 -14.71056 -14.52638 -14.19679 -14.02011 -13.75454 -13.36246 -13.07585 -12.93141 -12.63816 -12.43276 -12.33972 -12.20756 -12.10990 -12.02389 -11.62680 -11.59394 -11.44370 -11.33775 -11.14815 -11.02531 -10.80663 -10.35315 -10.20383 -10.11998 -10.03237 -9.91242 -9.56926 -9.45563 -9.12190 -8.60492 -7.82786 -7.31753 -6.21075 -4.28211 2.49055 2.73845 3.15355 3.22803 3.23386 3.31089 3.34810 3.37693 3.70030 3.93796 4.31476 4.40636 4.46962 4.61497 4.69452 4.79084 4.85758 4.92435 4.98609 5.01950 5.03840 5.12566 5.21328 5.26965 5.33749 5.38446 5.48704 5.60814 5.78484 5.86126 6.00625 6.17757 6.20471 6.31142 6.43324 6.53600 6.65726 6.70849 6.72397 6.80640 7.01985 7.12039 7.25918 7.62243 7.72483 7.94402 8.07572 8.14785 8.71939 8.75207 8.82891 9.37867 10.86062 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013791 B = 0.002073 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.801371 B =13506.087728 C =14800.267280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.062 3.938 4 C 0.064 3.936 5 O -0.375 6.375 6 C 0.052 3.948 7 C 0.169 3.831 8 H 0.102 0.898 9 C -0.161 4.161 10 N -0.736 5.736 11 C 0.714 3.286 12 O -0.570 6.570 13 N -0.644 5.644 14 C 0.284 3.716 15 C -0.289 4.289 16 C 0.089 3.911 17 C -0.083 4.083 18 N -0.319 5.319 19 C 0.259 3.741 20 C -0.533 4.533 21 H 0.065 0.935 22 C 0.064 3.936 23 N -0.892 5.892 24 Si 0.906 3.094 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.281 1.281 28 N -0.325 5.325 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.402 0.598 42 H 0.406 0.594 43 H 0.160 0.840 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.054 0.946 48 H 0.051 0.949 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.201 25.214 15.083 29.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.015 4.015 4 C -0.013 4.013 5 O -0.294 6.294 6 C -0.025 4.025 7 C 0.064 3.936 8 H 0.120 0.880 9 C -0.220 4.220 10 N -0.393 5.393 11 C 0.413 3.587 12 O -0.445 6.445 13 N -0.294 5.294 14 C 0.030 3.970 15 C -0.320 4.320 16 C -0.042 4.042 17 C -0.141 4.141 18 N -0.102 5.102 19 C 0.141 3.859 20 C -0.571 4.571 21 H 0.083 0.917 22 C -0.139 4.139 23 N -0.531 5.531 24 Si 0.733 3.267 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.207 1.207 28 N -0.156 5.156 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.237 0.763 42 H 0.241 0.759 43 H 0.178 0.822 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.072 0.928 48 H 0.069 0.931 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.163 24.072 14.637 28.350 hybrid contribution -1.066 0.473 -0.202 1.183 sum -4.229 24.545 14.435 28.787 Atomic orbital electron populations 1.22761 0.80887 1.03100 0.99814 1.87964 1.19721 1.27102 1.95365 1.22556 0.92357 0.85701 1.00844 1.22513 0.93396 0.97556 0.87843 1.87967 1.21603 1.82084 1.37752 1.22866 0.82205 0.99928 0.97479 1.20844 0.99295 0.80087 0.93412 0.88029 1.22112 1.01978 0.99202 0.98679 1.45064 1.36475 1.10074 1.47718 1.15646 0.82570 0.79710 0.80787 1.90856 1.28587 1.79794 1.45305 1.41417 1.34828 1.08065 1.45102 1.18670 0.95027 0.88603 0.94666 1.21230 1.04421 0.99704 1.06643 1.21049 0.94575 0.90005 0.98565 1.20320 0.94461 1.02717 0.96631 1.48937 1.20286 1.11370 1.29563 1.19666 0.98947 0.71129 0.96169 1.21375 1.29064 0.94213 1.12473 0.91716 1.24931 0.96041 0.95169 0.97745 1.69934 1.43414 0.98744 1.40980 0.86309 0.80257 0.78342 0.81826 1.19583 1.20680 1.20693 1.77252 1.18345 1.05126 1.14830 0.94242 0.93965 0.89384 0.91948 0.92365 0.92349 0.91764 0.92392 0.91677 0.91596 0.92045 0.91788 0.76331 0.75912 0.82230 0.90505 0.90876 0.90943 0.92844 0.93071 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.40 10.67 -40.07 -0.43 -3.83 16 3 C 0.06 0.39 6.32 37.16 0.23 0.62 16 4 C 0.06 0.38 6.32 37.16 0.23 0.62 16 5 O -0.37 -3.07 9.16 -40.07 -0.37 -3.44 16 6 C 0.05 0.37 5.68 37.16 0.21 0.58 16 7 C 0.17 1.62 2.98 -67.93 -0.20 1.42 16 8 H 0.10 1.05 7.58 -51.93 -0.39 0.65 16 9 C -0.16 -1.58 9.29 37.16 0.35 -1.23 16 10 N -0.74 -8.40 5.06 -58.67 -0.30 -8.69 16 11 C 0.71 11.19 8.50 -86.92 -0.74 10.46 16 12 O -0.57 -10.64 13.13 5.28 0.07 -10.57 16 13 N -0.64 -10.77 5.46 -15.50 -0.08 -10.86 16 14 C 0.28 6.06 8.11 -154.35 -1.25 4.81 16 15 C -0.29 -6.21 9.52 -39.84 -0.38 -6.59 16 16 C 0.09 1.95 6.92 -82.28 -0.57 1.38 16 17 C -0.08 -1.47 10.11 36.01 0.36 -1.11 16 18 N -0.32 -7.81 3.59 -58.33 -0.21 -8.02 16 19 C 0.26 6.79 5.99 -5.19 -0.03 6.76 16 20 C -0.53 -14.98 9.39 -34.44 -0.32 -15.30 16 21 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 22 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 24 Si 0.91 21.47 29.54 -169.99 -5.02 16.45 16 25 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 N -0.32 -7.78 12.59 31.44 0.40 -7.39 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.04 0.24 8.14 -51.92 -0.42 -0.19 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 0.68 7.56 -51.93 -0.39 0.28 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.40 3.98 8.40 -40.82 -0.34 3.64 16 42 H 0.41 5.64 8.84 -40.82 -0.36 5.28 16 43 H 0.16 3.36 5.91 -52.49 -0.31 3.05 16 44 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.07 1.28 7.07 -51.93 -0.37 0.92 16 47 H 0.05 1.38 7.04 -51.93 -0.37 1.02 16 48 H 0.05 1.43 8.14 -51.93 -0.42 1.00 16 49 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 411.89 15.07 6.21 6.21 Total: -1.00 -34.60 411.89 -8.08 -42.69 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -8.00 Total: 6.77 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -1.09 Total: 5.39 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: 0.54 Total: -59.66 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.73 Total: -17.85 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.60 -8.08 -42.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348207564.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.361 kcal (2) G-P(sol) polarization free energy of solvation -34.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds