Wall clock time and date at job start Sat Apr 11 2020 06:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42906 * 113.99964 * 2 1 4 4 C 1.53000 * 109.46979 * 179.97438 * 3 2 1 5 5 O 1.42896 * 109.47438 * 65.00390 * 4 3 2 6 6 C 1.42898 * 114.00551 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47374 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.47275 * 175.00013 * 7 6 5 9 9 C 1.52999 * 109.47278 * 54.99854 * 7 6 5 10 10 N 1.46507 * 109.47148 * 295.00072 * 7 6 5 11 11 C 1.34775 * 119.99876 * 205.00307 * 10 7 6 12 12 O 1.21593 * 120.00151 * 359.97438 * 11 10 7 13 13 N 1.34777 * 119.99585 * 179.97438 * 11 10 7 14 14 C 1.40203 * 119.99577 * 179.72010 * 13 11 10 15 15 C 1.40396 * 125.97476 * 359.97438 * 14 13 11 16 16 C 1.35236 * 107.86738 * 179.82666 * 15 14 13 17 17 C 1.50704 * 126.07213 * 180.15651 * 16 15 14 18 18 N 1.34959 * 107.86036 * 0.42841 * 16 15 14 19 19 C 1.46499 * 125.98046 * 179.73175 * 18 16 15 20 20 C 1.50705 * 109.47270 * 269.97351 * 19 18 16 21 21 H 1.08001 * 119.99426 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00136 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00005 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99620 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47101 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46834 * 119.99986 * 24 22 20 27 27 H 1.48499 * 109.47115 * 240.00028 * 24 22 20 28 28 N 1.31212 * 125.97054 * 180.29973 * 14 13 11 29 29 H 1.08998 * 109.47428 * 300.00156 * 1 2 3 30 30 H 1.09007 * 109.46763 * 60.00303 * 1 2 3 31 31 H 1.09002 * 109.46648 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46685 * 59.99989 * 3 2 1 33 33 H 1.09000 * 109.47332 * 299.99871 * 3 2 1 34 34 H 1.09004 * 109.47245 * 304.99986 * 4 3 2 35 35 H 1.09004 * 109.46633 * 185.00202 * 4 3 2 36 36 H 1.08999 * 109.46588 * 59.99858 * 6 5 4 37 37 H 1.09000 * 109.46642 * 300.00181 * 6 5 4 38 38 H 1.09003 * 109.46809 * 300.00301 * 9 7 6 39 39 H 1.09003 * 109.47054 * 59.99916 * 9 7 6 40 40 H 1.08996 * 109.47245 * 180.02562 * 9 7 6 41 41 H 0.97000 * 119.99601 * 24.99646 * 10 7 6 42 42 H 0.97001 * 120.00485 * 0.02562 * 13 11 10 43 43 H 1.08002 * 126.06274 * 359.97438 * 15 14 13 44 44 H 1.09002 * 109.47194 * 270.32264 * 17 16 15 45 45 H 1.09003 * 109.46867 * 30.31656 * 17 16 15 46 46 H 1.08995 * 109.47646 * 150.31612 * 17 16 15 47 47 H 1.09006 * 109.47055 * 29.97327 * 19 18 16 48 48 H 1.08997 * 109.47616 * 149.97083 * 19 18 16 49 49 H 0.97004 * 119.99448 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9659 0.5793 -1.2201 6 6 5.3823 0.4198 -1.3220 7 6 5.7267 -0.2349 -2.6613 8 1 6.8096 -0.2759 -2.7778 9 6 5.1217 0.5868 -3.8013 10 7 5.1801 -1.5938 -2.6954 11 6 5.7405 -2.5257 -3.4917 12 8 6.6993 -2.2385 -4.1821 13 7 5.2380 -3.7759 -3.5227 14 6 5.8172 -4.7437 -4.3555 15 6 6.9177 -4.5487 -5.2051 16 6 7.1701 -5.7197 -5.8326 17 6 8.2678 -5.9712 -6.8342 18 7 6.2608 -6.6217 -5.4072 19 6 6.1673 -8.0187 -5.8384 20 6 5.2616 -8.1143 -7.0391 21 1 4.8020 -7.2234 -7.4410 22 6 5.0206 -9.3389 -7.6250 23 7 5.5815 -10.4234 -7.1364 24 14 3.8973 -9.4573 -9.1129 25 1 3.3968 -8.1041 -9.4642 26 1 4.6541 -10.0182 -10.2610 27 1 2.7487 -10.3439 -8.7966 28 7 5.4218 -5.9884 -4.4815 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8508 0.5685 0.8427 35 1 3.9784 2.1766 0.0903 36 1 5.7362 -0.2120 -0.5074 37 1 5.8632 1.3960 -1.2600 38 1 4.0387 0.6277 -3.6847 39 1 5.5283 1.5979 -3.7759 40 1 5.3667 0.1201 -4.7553 41 1 4.4151 -1.8228 -2.1448 42 1 4.4728 -4.0049 -2.9722 43 1 7.4669 -3.6275 -5.3329 44 1 7.9008 -5.7544 -7.8375 45 1 9.1179 -5.3265 -6.6111 46 1 8.5785 -7.0144 -6.7786 47 1 7.1597 -8.3848 -6.1017 48 1 5.7606 -8.6228 -5.0274 49 1 5.4116 -11.2850 -7.5485 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348207564.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:23 Heat of formation + Delta-G solvation = -67.527909 kcal Electronic energy + Delta-G solvation = -29206.304122 eV Core-core repulsion = 24976.873290 eV Total energy + Delta-G solvation = -4229.430832 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 4.31 seconds Orbital eigenvalues (eV) -42.29393 -41.03209 -39.47036 -38.37537 -36.61711 -35.95290 -35.29359 -33.23312 -32.64355 -31.83860 -30.72412 -28.49952 -27.84087 -27.45934 -26.96003 -25.11652 -23.54178 -23.45376 -21.74647 -21.33006 -21.06334 -19.13258 -18.76323 -18.11451 -17.77538 -17.55560 -17.16389 -16.72122 -16.54936 -16.41774 -16.23452 -16.09654 -15.72144 -15.63503 -15.43824 -14.68464 -14.59802 -14.36637 -14.07984 -13.77967 -13.68874 -13.54639 -13.49453 -13.28720 -13.11467 -12.90208 -12.82673 -12.66783 -12.62203 -12.25935 -12.21147 -12.06270 -11.97964 -11.84565 -11.54515 -11.32818 -11.09989 -10.72835 -10.61932 -10.51674 -10.18614 -9.54254 -9.05548 -8.31730 -6.49376 1.04424 1.14881 1.37088 1.38665 1.51799 1.69372 2.10789 2.35863 2.41761 2.69339 2.91043 2.97373 3.16627 3.81055 3.89248 4.11464 4.17427 4.18881 4.28070 4.37398 4.46586 4.47753 4.53109 4.54923 4.62450 4.63485 4.66515 4.73769 4.79266 4.82208 4.87958 4.89199 4.91185 4.97325 5.03886 5.05109 5.17249 5.24454 5.39713 5.55043 5.58211 5.82352 5.89185 5.99839 6.19457 6.29364 6.33031 6.63076 6.77463 7.15202 7.21433 7.45935 8.74085 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013791 B = 0.002073 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.801371 B =13506.087728 C =14800.267280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.414 6.414 3 C 0.056 3.944 4 C 0.060 3.940 5 O -0.396 6.396 6 C 0.060 3.940 7 C 0.163 3.837 8 H 0.097 0.903 9 C -0.154 4.154 10 N -0.717 5.717 11 C 0.712 3.288 12 O -0.599 6.599 13 N -0.638 5.638 14 C 0.293 3.707 15 C -0.297 4.297 16 C 0.086 3.914 17 C -0.081 4.081 18 N -0.344 5.344 19 C 0.275 3.725 20 C -0.551 4.551 21 H 0.048 0.952 22 C 0.022 3.978 23 N -0.918 5.918 24 Si 0.972 3.028 25 H -0.275 1.275 26 H -0.266 1.266 27 H -0.274 1.274 28 N -0.362 5.362 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.035 0.965 41 H 0.412 0.588 42 H 0.419 0.581 43 H 0.167 0.833 44 H 0.083 0.917 45 H 0.106 0.894 46 H 0.069 0.931 47 H 0.053 0.947 48 H 0.024 0.976 49 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.389 27.213 15.378 31.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.333 6.333 3 C -0.020 4.020 4 C -0.016 4.016 5 O -0.316 6.316 6 C -0.017 4.017 7 C 0.058 3.942 8 H 0.115 0.885 9 C -0.212 4.212 10 N -0.373 5.373 11 C 0.412 3.588 12 O -0.477 6.477 13 N -0.290 5.290 14 C 0.038 3.962 15 C -0.328 4.328 16 C -0.044 4.044 17 C -0.139 4.139 18 N -0.126 5.126 19 C 0.156 3.844 20 C -0.589 4.589 21 H 0.066 0.934 22 C -0.179 4.179 23 N -0.556 5.556 24 Si 0.796 3.204 25 H -0.200 1.200 26 H -0.191 1.191 27 H -0.199 1.199 28 N -0.193 5.193 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.054 0.946 41 H 0.248 0.752 42 H 0.256 0.744 43 H 0.184 0.816 44 H 0.101 0.899 45 H 0.124 0.876 46 H 0.088 0.912 47 H 0.071 0.929 48 H 0.042 0.958 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.372 26.116 14.980 30.295 hybrid contribution -1.015 -0.009 -0.198 1.034 sum -4.387 26.107 14.782 30.320 Atomic orbital electron populations 1.22861 0.79982 1.03393 1.00712 1.87915 1.20968 1.28863 1.95581 1.22749 0.92550 0.84892 1.01795 1.22692 0.93302 0.98745 0.86888 1.87935 1.22035 1.82647 1.38966 1.22813 0.82167 1.01099 0.95609 1.21074 0.98970 0.78893 0.95213 0.88545 1.22035 1.01745 1.00262 0.97175 1.45047 1.36078 1.10013 1.46198 1.15809 0.82364 0.79673 0.80996 1.90823 1.29997 1.80187 1.46683 1.41447 1.35141 1.07773 1.44644 1.18960 0.94535 0.88480 0.94250 1.21400 1.04746 0.99788 1.06880 1.21746 0.94525 0.89523 0.98592 1.20463 0.94276 1.03340 0.95810 1.48751 1.21705 1.11164 1.30989 1.19245 0.98282 0.72229 0.94622 1.21460 1.29968 0.94031 1.13457 0.93388 1.25736 0.97192 0.94584 1.00396 1.70011 1.44156 0.99306 1.42157 0.85299 0.78458 0.78096 0.78555 1.19964 1.19111 1.19935 1.77171 1.19632 1.06415 1.16078 0.92677 0.93705 0.89507 0.89785 0.92548 0.92351 0.89192 0.91805 0.88959 0.92063 0.89675 0.94613 0.75220 0.74409 0.81566 0.89866 0.87560 0.91239 0.92922 0.95796 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -6.94 10.67 -144.35 -1.54 -8.48 16 3 C 0.06 0.60 6.32 71.98 0.45 1.05 16 4 C 0.06 0.57 6.32 71.98 0.45 1.03 16 5 O -0.40 -5.63 9.16 -144.35 -1.32 -6.95 16 6 C 0.06 0.69 5.68 71.98 0.41 1.09 16 7 C 0.16 2.87 2.98 44.99 0.13 3.00 16 8 H 0.10 1.86 7.58 -2.39 -0.02 1.84 16 9 C -0.15 -2.82 9.29 71.98 0.67 -2.15 16 10 N -0.72 -15.60 5.06 -457.81 -2.32 -17.92 16 11 C 0.71 22.00 8.50 179.05 1.52 23.52 16 12 O -0.60 -22.20 13.13 -4.01 -0.05 -22.25 16 13 N -0.64 -21.27 5.46 -321.22 -1.75 -23.03 16 14 C 0.29 12.63 8.11 133.31 1.08 13.71 16 15 C -0.30 -12.80 9.52 22.10 0.21 -12.59 16 16 C 0.09 3.80 6.92 41.39 0.29 4.09 16 17 C -0.08 -2.80 10.11 71.24 0.72 -2.08 16 18 N -0.34 -17.26 3.59 -338.44 -1.22 -18.48 16 19 C 0.28 14.94 5.99 85.63 0.51 15.46 16 20 C -0.55 -31.63 9.39 25.60 0.24 -31.39 16 21 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 22 C 0.02 1.21 5.46 84.65 0.46 1.67 16 23 N -0.92 -52.58 13.29 21.45 0.28 -52.30 16 24 Si 0.97 43.93 29.54 68.60 2.03 45.96 16 25 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 27 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 28 N -0.36 -17.80 12.59 -54.43 -0.69 -18.49 16 29 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.04 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.09 0.38 8.14 -2.38 -0.02 0.36 16 36 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.06 1.18 7.56 -2.39 -0.02 1.16 16 39 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.41 7.64 8.40 -92.71 -0.78 6.86 16 42 H 0.42 11.52 8.84 -92.71 -0.82 10.70 16 43 H 0.17 6.95 5.91 -2.91 -0.02 6.93 16 44 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 45 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 46 H 0.07 2.44 7.07 -2.39 -0.02 2.43 16 47 H 0.05 2.82 7.04 -2.38 -0.02 2.80 16 48 H 0.02 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -75.57 411.89 1.20 -74.37 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: -0.63 Total: 29.61 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: 8.40 Total: 17.96 kcal Atomic # 7 Polarization: -124.52 SS G_CDS: -5.69 Total: -130.21 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -2.91 Total: -37.69 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -75.57 1.20 -74.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348207564.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.838 kcal (2) G-P(sol) polarization free energy of solvation -75.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.31 seconds