Wall clock time and date at job start Sat Apr 11 2020 06:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47111 * 2 1 4 4 C 1.53001 * 109.47096 * 59.99833 * 3 2 1 5 5 C 1.53002 * 109.47114 * 64.99938 * 4 3 2 6 6 N 1.46496 * 109.47141 * 179.97438 * 3 2 1 7 7 C 1.34776 * 119.99990 * 179.97438 * 6 3 2 8 8 O 1.21280 * 120.00071 * 0.02562 * 7 6 3 9 9 C 1.50706 * 120.00154 * 179.97438 * 7 6 3 10 10 C 1.53929 * 113.73605 * 278.77404 * 9 7 6 11 11 N 1.48186 * 86.10050 * 221.95623 * 10 9 7 12 12 C 1.46905 * 111.07096 * 137.52182 * 11 10 9 13 13 C 1.50700 * 109.47321 * 70.56559 * 12 11 10 14 14 O 1.21290 * 119.99918 * 359.97438 * 13 12 11 15 15 N 1.34774 * 119.99788 * 179.97438 * 13 12 11 16 16 C 1.37102 * 119.99546 * 179.97438 * 15 13 12 17 17 H 1.07989 * 120.00293 * 359.97438 * 16 15 13 18 18 C 1.38958 * 119.99631 * 179.97438 * 16 15 13 19 19 N 1.31401 * 119.99755 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99986 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47073 * 89.99664 * 20 18 16 22 22 H 1.48497 * 109.47003 * 210.00135 * 20 18 16 23 23 H 1.48502 * 109.47077 * 329.99891 * 20 18 16 24 24 C 1.47957 * 90.80024 * 24.59999 * 11 10 9 25 25 C 1.50696 * 109.47042 * 299.99859 * 3 2 1 26 26 N 1.34779 * 120.00079 * 275.00281 * 25 3 2 27 27 O 1.21284 * 120.00368 * 94.99886 * 25 3 2 28 28 H 1.09007 * 109.47119 * 60.00263 * 1 2 3 29 29 H 1.09001 * 109.46952 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47368 * 300.00382 * 1 2 3 31 31 H 1.08995 * 109.47334 * 240.00167 * 2 1 3 32 32 H 1.09007 * 109.47119 * 119.99737 * 2 1 3 33 33 H 1.09002 * 109.47041 * 185.00470 * 4 3 2 34 34 H 1.09001 * 109.47252 * 304.99990 * 4 3 2 35 35 H 1.09003 * 109.46836 * 179.97438 * 5 4 3 36 36 H 1.08994 * 109.47269 * 300.00271 * 5 4 3 37 37 H 1.09001 * 109.47018 * 59.99910 * 5 4 3 38 38 H 0.97005 * 120.00034 * 0.02562 * 6 3 2 39 39 H 1.08998 * 112.93440 * 50.33987 * 9 7 6 40 40 H 1.09000 * 113.75938 * 336.23679 * 10 9 7 41 41 H 1.08998 * 113.76053 * 107.59970 * 10 9 7 42 42 H 1.08999 * 109.46982 * 190.56472 * 12 11 10 43 43 H 1.08996 * 109.46958 * 310.56009 * 12 11 10 44 44 H 0.96997 * 120.00477 * 359.97438 * 15 13 12 45 45 H 0.97005 * 119.99980 * 180.02562 * 19 18 16 46 46 H 1.09006 * 113.75754 * 221.08861 * 24 11 10 47 47 H 1.08999 * 113.75952 * 89.71874 * 24 11 10 48 48 H 0.97001 * 119.99900 * 359.97438 * 26 25 3 49 49 H 0.96999 * 120.00343 * 180.02562 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1638 1.2492 5 6 2.1400 1.5188 2.4953 6 7 3.5049 1.4425 0.0006 7 6 4.1788 2.6097 0.0002 8 8 3.5724 3.6601 -0.0002 9 6 5.6859 2.6098 0.0014 10 6 6.3043 2.3960 1.3947 11 7 7.2705 3.4542 1.0168 12 6 7.5001 4.3824 2.1321 13 6 8.2865 3.6853 3.2122 14 8 8.6222 2.5288 3.0674 15 7 8.6167 4.3469 4.3390 16 6 9.3316 3.7125 5.3218 17 1 9.6298 2.6826 5.1933 18 6 9.6725 4.3948 6.4833 19 7 10.3582 3.7870 7.4251 20 14 9.1560 6.1762 6.7059 21 1 7.8251 6.2273 7.3625 22 1 10.1533 6.8785 7.5529 23 1 9.0792 6.8387 5.3791 24 6 6.3053 4.0182 0.0476 25 6 1.5377 2.1529 -1.2304 26 7 2.2145 2.0501 -2.3914 27 8 0.5243 2.8171 -1.1761 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.8182 3.2141 1.2055 34 1 0.4436 2.0869 1.2951 35 1 1.7769 2.0329 3.3853 36 1 1.8517 0.4686 2.5390 37 1 3.2263 1.5957 2.4494 38 1 3.9900 0.6025 0.0006 39 1 6.1112 1.9685 -0.7705 40 1 5.6446 2.6766 2.2158 41 1 6.7572 1.4136 1.5281 42 1 8.0599 5.2471 1.7757 43 1 6.5419 4.7108 2.5346 44 1 8.3485 5.2719 4.4546 45 1 10.5959 4.2631 8.2361 46 1 6.7590 4.3295 -0.8934 47 1 5.6459 4.7742 0.4738 48 1 3.0251 1.5191 -2.4349 49 1 1.8914 2.5076 -3.1834 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353218832.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:49 Heat of formation + Delta-G solvation = -70.608551 kcal Electronic energy + Delta-G solvation = -30933.911205 eV Core-core repulsion = 26704.346786 eV Total energy + Delta-G solvation = -4229.564419 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.46405 -40.20001 -38.64703 -37.67172 -36.60849 -34.08963 -33.97767 -33.12993 -31.74331 -31.53789 -30.73834 -27.67292 -26.07673 -26.01251 -24.32967 -23.88874 -22.34688 -21.44747 -19.66913 -19.53602 -19.40227 -18.44880 -17.98424 -17.59159 -17.16908 -16.25176 -16.00212 -15.60407 -15.49923 -15.45005 -15.17352 -14.84851 -14.46641 -14.10232 -13.74180 -13.61583 -13.44654 -13.28149 -13.17719 -12.89038 -12.65831 -12.54701 -12.29641 -12.27186 -12.13905 -11.98602 -11.73909 -11.69674 -11.27455 -11.21254 -11.02058 -10.98848 -10.78231 -10.60296 -10.38518 -9.99334 -9.94100 -9.84819 -9.58241 -9.37527 -8.82309 -8.40050 -8.19692 -6.32986 -3.84379 2.24381 2.33114 2.76182 3.02493 3.06530 3.14768 3.20607 3.70187 3.83588 4.09083 4.19920 4.21531 4.35270 4.53703 4.54063 4.62490 4.82467 4.89206 4.94208 5.11950 5.13568 5.17588 5.21301 5.30062 5.41257 5.43011 5.45968 5.53656 5.62981 5.63751 5.65111 5.79136 5.82294 5.83101 5.91317 5.94157 6.05098 6.10909 6.20887 6.41559 6.48057 6.96804 7.00655 7.14081 7.55763 7.89480 7.99321 8.11690 8.57632 8.92780 9.40445 9.80251 10.80026 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.002477 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.004738 B =11303.105876 C =11757.859479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C 0.163 3.837 4 C -0.125 4.125 5 C -0.149 4.149 6 N -0.726 5.726 7 C 0.523 3.477 8 O -0.521 6.521 9 C -0.148 4.148 10 C 0.040 3.960 11 N -0.452 5.452 12 C 0.007 3.993 13 C 0.453 3.547 14 O -0.562 6.562 15 N -0.590 5.590 16 C -0.305 4.305 17 H 0.120 0.880 18 C 0.042 3.958 19 N -0.881 5.881 20 Si 0.878 3.122 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.269 1.269 24 C 0.022 3.978 25 C 0.530 3.470 26 N -0.851 5.851 27 O -0.534 6.534 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.406 0.594 39 H 0.123 0.877 40 H 0.070 0.930 41 H 0.104 0.896 42 H 0.094 0.906 43 H 0.057 0.943 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.094 0.906 47 H 0.083 0.917 48 H 0.398 0.602 49 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.796 -6.053 -18.392 26.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.162 4.162 3 C 0.073 3.927 4 C -0.163 4.163 5 C -0.207 4.207 6 N -0.381 5.381 7 C 0.310 3.690 8 O -0.396 6.396 9 C -0.170 4.170 10 C -0.090 4.090 11 N -0.174 5.174 12 C -0.125 4.125 13 C 0.238 3.762 14 O -0.444 6.444 15 N -0.230 5.230 16 C -0.433 4.433 17 H 0.137 0.863 18 C -0.161 4.161 19 N -0.521 5.521 20 Si 0.705 3.295 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.194 1.194 24 C -0.107 4.107 25 C 0.314 3.686 26 N -0.414 5.414 27 O -0.409 6.409 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.242 0.758 39 H 0.141 0.859 40 H 0.088 0.912 41 H 0.122 0.878 42 H 0.112 0.888 43 H 0.075 0.925 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.112 0.888 47 H 0.101 0.899 48 H 0.227 0.773 49 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -17.898 -5.824 -18.234 26.206 hybrid contribution -0.399 1.317 0.343 1.418 sum -18.297 -4.507 -17.891 25.984 Atomic orbital electron populations 1.21843 0.93780 1.02274 1.03381 1.21780 0.97899 0.92686 1.03799 1.20626 0.80642 0.97087 0.94330 1.21825 1.01323 1.01534 0.91652 1.21778 1.01315 1.00455 0.97134 1.46223 1.05542 1.09477 1.76867 1.20728 0.89950 0.83422 0.74924 1.90731 1.69815 1.31209 1.47800 1.23354 0.90269 1.01406 1.01936 1.23764 0.92672 0.99852 0.92670 1.68474 1.31993 1.07341 1.09591 1.22512 1.00102 0.96891 0.93040 1.19555 0.85367 0.87941 0.83292 1.90548 1.57378 1.17142 1.79344 1.42223 1.50903 1.12924 1.16936 1.19417 1.29612 0.99897 0.94417 0.86270 1.25035 0.97032 0.98388 0.95651 1.69616 1.37670 1.37135 1.07656 0.86687 0.79385 0.84752 0.78691 1.19622 1.20121 1.19443 1.23899 0.93366 0.94469 0.98971 1.20559 0.83446 0.79959 0.84679 1.43777 1.30312 1.54900 1.12433 1.90737 1.25233 1.39967 1.84930 0.92124 0.91861 0.91417 0.90904 0.89356 0.89493 0.89984 0.92244 0.92545 0.92492 0.75811 0.85866 0.91172 0.87769 0.88792 0.92518 0.79687 0.91592 0.88801 0.89920 0.77349 0.76921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 9.26 37.16 0.34 -0.68 16 2 C -0.12 -0.70 4.85 -26.73 -0.13 -0.83 16 3 C 0.16 1.36 0.47 -132.97 -0.06 1.30 16 4 C -0.12 -1.31 3.91 -26.73 -0.10 -1.41 16 5 C -0.15 -1.38 9.45 37.16 0.35 -1.03 16 6 N -0.73 -5.17 3.43 -48.68 -0.17 -5.33 16 7 C 0.52 5.31 6.42 -10.98 -0.07 5.24 16 8 O -0.52 -7.29 13.17 5.56 0.07 -7.22 16 9 C -0.15 -1.47 4.32 -90.84 -0.39 -1.86 16 10 C 0.04 0.53 6.33 -2.64 -0.02 0.51 16 11 N -0.45 -6.85 5.95 -239.61 -1.42 -8.28 16 12 C 0.01 0.11 5.31 -4.97 -0.03 0.09 16 13 C 0.45 10.17 7.59 -10.99 -0.08 10.09 16 14 O -0.56 -14.63 15.13 5.55 0.08 -14.55 16 15 N -0.59 -14.04 5.09 -10.96 -0.06 -14.10 16 16 C -0.30 -8.56 10.16 -14.93 -0.15 -8.72 16 17 H 0.12 3.81 7.39 -52.49 -0.39 3.43 16 18 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 19 N -0.88 -25.62 13.96 55.50 0.77 -24.85 16 20 Si 0.88 19.43 27.74 -169.99 -4.71 14.71 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 23 H -0.27 -5.45 6.52 56.52 0.37 -5.08 16 24 C 0.02 0.26 7.31 -2.76 -0.02 0.24 16 25 C 0.53 5.57 4.60 -10.99 -0.05 5.52 16 26 N -0.85 -6.12 8.61 31.22 0.27 -5.85 16 27 O -0.53 -7.76 16.41 5.55 0.09 -7.67 16 28 H 0.06 0.50 6.83 -51.93 -0.35 0.15 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.49 6.32 -51.93 -0.33 0.16 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.42 6.57 -51.93 -0.34 0.08 16 33 H 0.09 1.20 6.32 -51.93 -0.33 0.88 16 34 H 0.08 0.86 6.06 -51.93 -0.31 0.54 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 37 H 0.06 0.58 7.29 -51.93 -0.38 0.20 16 38 H 0.41 1.76 8.47 -40.82 -0.35 1.41 16 39 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.00 7.74 -51.93 -0.40 0.60 16 41 H 0.10 1.47 8.10 -51.93 -0.42 1.05 16 42 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.06 0.86 7.70 -51.93 -0.40 0.46 16 44 H 0.37 7.81 5.76 -40.82 -0.24 7.57 16 45 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 47 H 0.08 1.06 7.08 -51.93 -0.37 0.69 16 48 H 0.40 1.90 8.19 -40.82 -0.33 1.56 16 49 H 0.40 2.59 8.93 -40.82 -0.36 2.22 16 LS Contribution 388.17 15.07 5.85 5.85 Total: -1.00 -36.92 388.17 -7.08 -44.00 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -7.35 Total: 13.78 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: -0.51 Total: 9.51 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -0.60 Total: -58.41 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: 0.25 Total: -29.43 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.71 Total: 14.71 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.92 -7.08 -44.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353218832.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.612 kcal (2) G-P(sol) polarization free energy of solvation -36.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds