Wall clock time and date at job start Sat Apr 11 2020 06:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47309 * 2 1 4 4 C 1.52998 * 109.47289 * 239.99292 * 2 1 3 5 5 N 1.46504 * 109.46799 * 119.99775 * 2 1 3 6 6 C 1.46763 * 124.35041 * 60.00239 * 5 2 1 7 7 C 1.54477 * 105.47516 * 162.96138 * 6 5 2 8 8 H 1.08995 * 110.96904 * 267.25709 * 7 6 5 9 9 C 1.52999 * 110.97132 * 143.52875 * 7 6 5 10 10 N 1.46500 * 109.47528 * 175.00086 * 9 7 6 11 11 C 1.34773 * 120.00431 * 180.02562 * 10 9 7 12 12 O 1.21593 * 119.99894 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00097 * 179.72742 * 11 10 9 14 14 C 1.46504 * 119.99854 * 180.27545 * 13 11 10 15 15 C 1.50701 * 109.46923 * 179.97438 * 14 13 11 16 16 O 1.21297 * 119.99993 * 0.02562 * 15 14 13 17 17 N 1.34776 * 119.99977 * 179.97438 * 15 14 13 18 18 C 1.37096 * 119.99931 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00191 * 359.97438 * 18 17 15 20 20 C 1.38947 * 119.99788 * 180.02562 * 18 17 15 21 21 N 1.31413 * 120.00029 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99903 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47041 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47126 * 119.99929 * 22 20 18 25 25 H 1.48496 * 109.47151 * 239.99653 * 22 20 18 26 26 C 1.54630 * 101.76438 * 25.41606 * 7 6 5 27 27 C 1.34421 * 124.34809 * 239.97489 * 5 2 1 28 28 O 1.21274 * 124.94276 * 0.39490 * 27 5 2 29 29 H 1.08997 * 109.47768 * 300.00300 * 1 2 3 30 30 H 1.09007 * 109.47121 * 60.00253 * 1 2 3 31 31 H 1.09003 * 109.47593 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47254 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47123 * 299.99532 * 3 2 1 34 34 H 1.08994 * 109.47334 * 59.99551 * 3 2 1 35 35 H 1.08997 * 109.47504 * 300.00404 * 4 2 1 36 36 H 1.09006 * 109.46829 * 60.00706 * 4 2 1 37 37 H 1.08998 * 109.47161 * 179.97438 * 4 2 1 38 38 H 1.08993 * 110.25059 * 43.95743 * 6 5 2 39 39 H 1.09006 * 110.24265 * 281.96094 * 6 5 2 40 40 H 1.09009 * 109.47054 * 55.00381 * 9 7 6 41 41 H 1.08998 * 109.47782 * 295.00842 * 9 7 6 42 42 H 0.97000 * 119.99456 * 0.02562 * 10 9 7 43 43 H 0.97000 * 119.99736 * 0.26819 * 13 11 10 44 44 H 1.08998 * 109.46968 * 299.99782 * 14 13 11 45 45 H 1.08997 * 109.47198 * 59.99605 * 14 13 11 46 46 H 0.97003 * 119.99587 * 0.02562 * 17 15 14 47 47 H 0.97000 * 119.99613 * 180.02562 * 21 20 18 48 48 H 1.08999 * 110.48982 * 93.87917 * 26 7 6 49 49 H 1.09004 * 110.48826 * 216.52369 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 2.0182 -0.6906 1.1963 6 6 1.7230 -2.0907 1.5226 7 6 2.7666 -2.4945 2.5876 8 1 3.6433 -2.9459 2.1232 9 6 2.1536 -3.4371 3.6252 10 7 3.1965 -3.8930 4.5475 11 6 2.8866 -4.7374 5.5512 12 8 1.7412 -5.1205 5.6914 13 7 3.8472 -5.1610 6.3963 14 6 3.5113 -6.0836 7.4836 15 6 4.7536 -6.3996 8.2761 16 8 5.8150 -5.9025 7.9636 17 7 4.6851 -7.2336 9.3326 18 6 5.8152 -7.5206 10.0538 19 1 6.7604 -7.0787 9.7751 20 6 5.7446 -8.3808 11.1426 21 7 4.5945 -8.9189 11.4814 22 14 7.2845 -8.7724 12.1249 23 1 8.4411 -8.0452 11.5430 24 1 7.0925 -8.3500 13.5356 25 1 7.5441 -10.2337 12.0767 26 6 3.1164 -1.1276 3.2204 27 6 2.7946 -0.1234 2.1357 28 8 3.1812 1.0259 2.1161 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6766 -1.7490 -1.2491 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7210 -1.2493 38 1 1.8284 -2.7151 0.6356 39 1 0.7155 -2.1788 1.9293 40 1 1.7142 -4.2973 3.1199 41 1 1.3801 -2.9097 4.1834 42 1 4.1102 -3.5870 4.4358 43 1 4.7609 -4.8551 6.2846 44 1 2.7711 -5.6214 8.1367 45 1 3.1032 -7.0041 7.0661 46 1 3.8362 -7.6308 9.5826 47 1 4.5453 -9.5191 12.2418 48 1 2.5017 -0.9468 4.1022 49 1 4.1750 -1.0857 3.4770 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596598493.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:21 Heat of formation + Delta-G solvation = -104.352541 kcal Electronic energy + Delta-G solvation = -29046.596795 eV Core-core repulsion = 24815.569128 eV Total energy + Delta-G solvation = -4231.027668 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 2.83 seconds Orbital eigenvalues (eV) -41.24531 -39.85647 -38.26122 -37.16652 -36.90803 -34.49960 -34.27540 -33.65617 -31.40597 -30.99177 -28.61544 -28.01599 -27.82587 -27.37612 -25.42987 -24.22459 -22.02147 -21.25566 -20.75441 -19.60862 -19.00123 -18.39993 -17.97120 -17.17882 -16.85657 -15.98291 -15.74633 -15.59668 -15.47969 -14.80269 -14.72137 -14.51825 -14.34427 -14.21324 -14.19309 -14.00905 -13.90781 -13.66689 -13.47709 -12.94052 -12.77342 -12.67357 -12.49997 -12.20305 -12.16728 -12.06671 -11.95478 -11.69877 -11.64079 -11.63204 -11.44159 -11.32869 -11.14762 -10.41506 -10.33623 -10.10434 -9.72145 -9.65355 -9.24235 -9.08437 -8.64708 -8.63571 -8.10645 -6.52155 -3.94150 2.27776 2.45349 2.78997 3.09797 3.22279 3.28935 3.35100 3.74300 3.87149 3.92364 4.08890 4.19862 4.33599 4.42425 4.45007 4.54337 4.60997 4.86649 4.88967 4.94943 5.06409 5.09030 5.13893 5.16680 5.25252 5.26914 5.33234 5.34347 5.39686 5.49703 5.52604 5.58354 5.67952 5.82127 5.89992 5.94263 5.99111 6.07090 6.27350 6.39935 6.71942 6.77434 7.02209 7.45665 7.86983 7.91989 8.18215 8.44407 8.74269 9.04189 9.38905 9.86639 10.64762 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.033404 B = 0.001568 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.028590 B =17853.030969 C =18304.458763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.173 3.827 3 C -0.141 4.141 4 C -0.158 4.158 5 N -0.612 5.612 6 C 0.111 3.889 7 C -0.113 4.113 8 H 0.100 0.900 9 C 0.153 3.847 10 N -0.750 5.750 11 C 0.705 3.295 12 O -0.598 6.598 13 N -0.724 5.724 14 C 0.129 3.871 15 C 0.428 3.572 16 O -0.598 6.598 17 N -0.549 5.549 18 C -0.305 4.305 19 H 0.106 0.894 20 C 0.026 3.974 21 N -0.894 5.894 22 Si 0.933 3.067 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.154 4.154 27 C 0.520 3.480 28 O -0.528 6.528 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.398 0.602 43 H 0.407 0.593 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.396 0.604 47 H 0.274 0.726 48 H 0.109 0.891 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.630 14.289 -23.919 29.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.089 3.911 3 C -0.198 4.198 4 C -0.216 4.216 5 N -0.347 5.347 6 C -0.013 4.013 7 C -0.132 4.132 8 H 0.118 0.882 9 C 0.028 3.972 10 N -0.406 5.406 11 C 0.405 3.595 12 O -0.476 6.476 13 N -0.381 5.381 14 C 0.000 4.000 15 C 0.214 3.786 16 O -0.485 6.485 17 N -0.184 5.184 18 C -0.434 4.434 19 H 0.124 0.876 20 C -0.177 4.177 21 N -0.534 5.534 22 Si 0.759 3.241 23 H -0.192 1.192 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.194 4.194 27 C 0.308 3.692 28 O -0.405 6.405 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.231 0.769 43 H 0.244 0.756 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.230 0.770 47 H 0.084 0.916 48 H 0.127 0.873 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.856 14.757 -23.883 29.438 hybrid contribution 0.956 -0.402 0.625 1.211 sum -7.900 14.355 -23.258 28.450 Atomic orbital electron populations 1.22195 0.94153 1.02508 1.02744 1.20479 0.93899 0.93042 0.83648 1.22097 1.02517 0.93148 1.02066 1.22191 1.01843 1.00752 0.96818 1.48440 1.51072 1.12531 1.22609 1.21967 0.98872 0.82046 0.98411 1.22401 0.99616 0.95249 0.95934 0.88182 1.21064 0.89832 0.97015 0.89318 1.44963 1.12332 1.51468 1.31874 1.15820 0.84849 0.79334 0.79521 1.90915 1.19186 1.62035 1.75507 1.44772 1.11829 1.50233 1.31262 1.20786 0.96819 0.93704 0.88675 1.19769 0.89633 0.84827 0.84383 1.90493 1.30552 1.56433 1.71002 1.41795 1.11824 1.39700 1.25077 1.19779 0.89496 1.25656 1.08498 0.87624 1.25325 0.98468 0.96366 0.97567 1.69624 1.24552 1.31026 1.28233 0.85757 0.81012 0.78220 0.79085 1.19152 1.20619 1.20631 1.22532 1.05091 0.93301 0.98479 1.20881 0.77380 0.87917 0.83068 1.90737 1.54576 1.17814 1.77326 0.92073 0.91248 0.92087 0.91288 0.92416 0.91236 0.92105 0.91222 0.92090 0.89856 0.90427 0.90895 0.91079 0.76860 0.75565 0.89995 0.90001 0.77015 0.91644 0.87311 0.87762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.82 8.54 37.15 0.32 -0.51 16 2 C 0.17 1.12 1.20 -131.82 -0.16 0.96 16 3 C -0.14 -1.12 7.00 37.16 0.26 -0.86 16 4 C -0.16 -0.79 8.49 37.16 0.32 -0.48 16 5 N -0.61 -4.34 2.76 -157.58 -0.43 -4.78 16 6 C 0.11 0.55 6.16 -3.12 -0.02 0.53 16 7 C -0.11 -0.60 3.16 -88.99 -0.28 -0.88 16 8 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 9 C 0.15 1.18 4.98 -4.04 -0.02 1.16 16 10 N -0.75 -7.50 5.50 -65.22 -0.36 -7.86 16 11 C 0.71 10.53 8.57 -86.92 -0.74 9.79 16 12 O -0.60 -10.98 16.34 5.28 0.09 -10.89 16 13 N -0.72 -11.52 5.53 -66.41 -0.37 -11.89 16 14 C 0.13 2.32 6.15 -5.19 -0.03 2.29 16 15 C 0.43 9.64 7.85 -10.99 -0.09 9.56 16 16 O -0.60 -15.02 15.24 5.54 0.08 -14.93 16 17 N -0.55 -13.44 5.29 -10.96 -0.06 -13.50 16 18 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 19 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16 20 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 21 N -0.89 -23.69 13.05 55.50 0.72 -22.96 16 22 Si 0.93 20.38 29.55 -169.99 -5.02 15.35 16 23 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 C -0.15 -1.06 6.36 -26.74 -0.17 -1.23 16 27 C 0.52 4.89 7.84 -10.86 -0.09 4.80 16 28 O -0.53 -6.86 13.99 5.56 0.08 -6.79 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.27 7.90 -51.93 -0.41 -0.14 16 32 H 0.07 0.67 7.08 -51.93 -0.37 0.31 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.69 7.06 -51.93 -0.37 0.32 16 35 H 0.06 0.26 7.21 -51.93 -0.37 -0.12 16 36 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.31 7.12 -51.93 -0.37 -0.06 16 39 H 0.08 0.35 7.89 -51.93 -0.41 -0.06 16 40 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 41 H 0.07 0.61 7.93 -51.93 -0.41 0.20 16 42 H 0.40 3.11 8.49 -40.82 -0.35 2.76 16 43 H 0.41 6.28 7.45 -40.82 -0.30 5.98 16 44 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 45 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 46 H 0.40 9.33 7.90 -40.82 -0.32 9.00 16 47 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 48 H 0.11 0.77 7.75 -51.93 -0.40 0.37 16 49 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 400.73 15.07 6.04 6.04 Total: -1.00 -33.95 400.73 -8.00 -41.95 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -7.82 Total: 12.93 kcal Atomic # 6 Polarization: 18.27 SS G_CDS: -0.94 Total: 17.33 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -0.49 Total: -60.99 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: 0.25 Total: -32.61 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.95 -8.00 -41.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596598493.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.400 kcal (2) G-P(sol) polarization free energy of solvation -33.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds