Wall clock time and date at job start Sat Apr 11 2020 06:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47309 * 2 1 4 4 C 1.52998 * 109.47289 * 239.99292 * 2 1 3 5 5 N 1.46504 * 109.46799 * 119.99775 * 2 1 3 6 6 C 1.46763 * 124.35041 * 60.00239 * 5 2 1 7 7 C 1.54477 * 105.47516 * 162.96138 * 6 5 2 8 8 H 1.08995 * 110.96904 * 267.25709 * 7 6 5 9 9 C 1.52999 * 110.97132 * 143.52875 * 7 6 5 10 10 N 1.46500 * 109.47528 * 175.00086 * 9 7 6 11 11 C 1.34773 * 120.00431 * 180.02562 * 10 9 7 12 12 O 1.21593 * 119.99894 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00097 * 179.72742 * 11 10 9 14 14 C 1.46504 * 119.99854 * 180.27545 * 13 11 10 15 15 C 1.50701 * 109.46923 * 179.97438 * 14 13 11 16 16 O 1.21297 * 119.99993 * 0.02562 * 15 14 13 17 17 N 1.34776 * 119.99977 * 179.97438 * 15 14 13 18 18 C 1.37096 * 119.99931 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00191 * 359.97438 * 18 17 15 20 20 C 1.38947 * 119.99788 * 180.02562 * 18 17 15 21 21 N 1.31413 * 120.00029 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99903 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47041 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47126 * 119.99929 * 22 20 18 25 25 H 1.48496 * 109.47151 * 239.99653 * 22 20 18 26 26 C 1.54630 * 101.76438 * 25.41606 * 7 6 5 27 27 C 1.34421 * 124.34809 * 239.97489 * 5 2 1 28 28 O 1.21274 * 124.94276 * 0.39490 * 27 5 2 29 29 H 1.08997 * 109.47768 * 300.00300 * 1 2 3 30 30 H 1.09007 * 109.47121 * 60.00253 * 1 2 3 31 31 H 1.09003 * 109.47593 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47254 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47123 * 299.99532 * 3 2 1 34 34 H 1.08994 * 109.47334 * 59.99551 * 3 2 1 35 35 H 1.08997 * 109.47504 * 300.00404 * 4 2 1 36 36 H 1.09006 * 109.46829 * 60.00706 * 4 2 1 37 37 H 1.08998 * 109.47161 * 179.97438 * 4 2 1 38 38 H 1.08993 * 110.25059 * 43.95743 * 6 5 2 39 39 H 1.09006 * 110.24265 * 281.96094 * 6 5 2 40 40 H 1.09009 * 109.47054 * 55.00381 * 9 7 6 41 41 H 1.08998 * 109.47782 * 295.00842 * 9 7 6 42 42 H 0.97000 * 119.99456 * 0.02562 * 10 9 7 43 43 H 0.97000 * 119.99736 * 0.26819 * 13 11 10 44 44 H 1.08998 * 109.46968 * 299.99782 * 14 13 11 45 45 H 1.08997 * 109.47198 * 59.99605 * 14 13 11 46 46 H 0.97003 * 119.99587 * 0.02562 * 17 15 14 47 47 H 0.97000 * 119.99613 * 180.02562 * 21 20 18 48 48 H 1.08999 * 110.48982 * 93.87917 * 26 7 6 49 49 H 1.09004 * 110.48826 * 216.52369 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 2.0182 -0.6906 1.1963 6 6 1.7230 -2.0907 1.5226 7 6 2.7666 -2.4945 2.5876 8 1 3.6433 -2.9459 2.1232 9 6 2.1536 -3.4371 3.6252 10 7 3.1965 -3.8930 4.5475 11 6 2.8866 -4.7374 5.5512 12 8 1.7412 -5.1205 5.6914 13 7 3.8472 -5.1610 6.3963 14 6 3.5113 -6.0836 7.4836 15 6 4.7536 -6.3996 8.2761 16 8 5.8150 -5.9025 7.9636 17 7 4.6851 -7.2336 9.3326 18 6 5.8152 -7.5206 10.0538 19 1 6.7604 -7.0787 9.7751 20 6 5.7446 -8.3808 11.1426 21 7 4.5945 -8.9189 11.4814 22 14 7.2845 -8.7724 12.1249 23 1 8.4411 -8.0452 11.5430 24 1 7.0925 -8.3500 13.5356 25 1 7.5441 -10.2337 12.0767 26 6 3.1164 -1.1276 3.2204 27 6 2.7946 -0.1234 2.1357 28 8 3.1812 1.0259 2.1161 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6766 -1.7490 -1.2491 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7210 -1.2493 38 1 1.8284 -2.7151 0.6356 39 1 0.7155 -2.1788 1.9293 40 1 1.7142 -4.2973 3.1199 41 1 1.3801 -2.9097 4.1834 42 1 4.1102 -3.5870 4.4358 43 1 4.7609 -4.8551 6.2846 44 1 2.7711 -5.6214 8.1367 45 1 3.1032 -7.0041 7.0661 46 1 3.8362 -7.6308 9.5826 47 1 4.5453 -9.5191 12.2418 48 1 2.5017 -0.9468 4.1022 49 1 4.1750 -1.0857 3.4770 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596598493.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:18 Heat of formation + Delta-G solvation = -130.079367 kcal Electronic energy + Delta-G solvation = -29047.712394 eV Core-core repulsion = 24815.569128 eV Total energy + Delta-G solvation = -4232.143267 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 6.30 seconds Orbital eigenvalues (eV) -41.87325 -41.08711 -39.98547 -37.93248 -37.52964 -36.21177 -35.21393 -35.18864 -33.34785 -31.71662 -29.44009 -28.96598 -28.23742 -28.21794 -26.65834 -25.59687 -22.60478 -21.92654 -21.81052 -21.32205 -20.09241 -19.64574 -19.41866 -17.92270 -17.46343 -17.34877 -17.03308 -16.82913 -16.47081 -16.21065 -15.87316 -15.83869 -15.34134 -15.16877 -15.07223 -14.86958 -14.74374 -14.65096 -14.31972 -13.91647 -13.71868 -13.56579 -13.53093 -13.29745 -13.07577 -12.97264 -12.89728 -12.73606 -12.59855 -12.42553 -12.24321 -12.20041 -12.10267 -11.94049 -11.84206 -11.55912 -11.38427 -10.52576 -10.46186 -10.35793 -10.07728 -9.75497 -9.65384 -8.49364 -5.99251 1.36614 1.44081 1.55846 1.58109 1.63864 1.92688 2.01787 2.18270 2.30409 3.07172 3.18220 3.28815 3.31276 3.52980 3.73969 3.83119 3.93673 4.03606 4.11632 4.24565 4.33345 4.48230 4.50766 4.55638 4.61772 4.66569 4.68759 4.71367 4.75694 4.81069 4.83527 4.92149 4.95478 4.96896 5.16565 5.19222 5.29415 5.35807 5.37638 5.41362 5.52838 5.73096 5.93993 6.00630 6.17613 6.50559 7.05922 7.08286 7.19731 7.45902 7.59186 7.97396 8.67722 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.033404 B = 0.001568 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.028590 B =17853.030969 C =18304.458763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.165 3.835 3 C -0.135 4.135 4 C -0.152 4.152 5 N -0.607 5.607 6 C 0.109 3.891 7 C -0.094 4.094 8 H 0.117 0.883 9 C 0.153 3.847 10 N -0.731 5.731 11 C 0.705 3.295 12 O -0.632 6.632 13 N -0.726 5.726 14 C 0.142 3.858 15 C 0.434 3.566 16 O -0.624 6.624 17 N -0.560 5.560 18 C -0.336 4.336 19 H 0.086 0.914 20 C -0.011 4.011 21 N -0.916 5.916 22 Si 0.996 3.004 23 H -0.270 1.270 24 H -0.272 1.272 25 H -0.272 1.272 26 C -0.151 4.151 27 C 0.508 3.492 28 O -0.575 6.575 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.049 0.951 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.411 0.589 43 H 0.410 0.590 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.399 0.601 47 H 0.279 0.721 48 H 0.106 0.894 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.094 13.504 -25.262 30.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.082 3.918 3 C -0.192 4.192 4 C -0.210 4.210 5 N -0.341 5.341 6 C -0.014 4.014 7 C -0.113 4.113 8 H 0.135 0.865 9 C 0.029 3.971 10 N -0.388 5.388 11 C 0.404 3.596 12 O -0.513 6.513 13 N -0.383 5.383 14 C 0.014 3.986 15 C 0.221 3.779 16 O -0.512 6.512 17 N -0.196 5.196 18 C -0.466 4.466 19 H 0.104 0.896 20 C -0.211 4.211 21 N -0.556 5.556 22 Si 0.820 3.180 23 H -0.195 1.195 24 H -0.198 1.198 25 H -0.197 1.197 26 C -0.191 4.191 27 C 0.297 3.703 28 O -0.455 6.455 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.125 0.875 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.247 0.753 43 H 0.248 0.752 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.233 0.767 47 H 0.089 0.911 48 H 0.124 0.876 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.337 13.973 -25.278 30.355 hybrid contribution 1.054 -0.086 0.957 1.426 sum -8.283 13.887 -24.321 29.206 Atomic orbital electron populations 1.22157 0.92853 1.03365 1.02717 1.20640 0.94856 0.92125 0.84162 1.21998 1.00943 0.94648 1.01632 1.22146 1.01102 1.01528 0.96237 1.48577 1.49968 1.13339 1.22208 1.22153 0.99107 0.80908 0.99223 1.22267 1.00218 0.93658 0.95188 0.86521 1.21192 0.89231 0.97499 0.89194 1.44884 1.13656 1.49707 1.30533 1.15923 0.83968 0.79675 0.79989 1.90895 1.20443 1.63486 1.76515 1.44698 1.12248 1.50222 1.31150 1.20564 0.94296 0.94824 0.88949 1.20472 0.90639 0.83192 0.83619 1.90471 1.32208 1.57005 1.71538 1.41842 1.11409 1.40569 1.25761 1.19771 0.89686 1.27085 1.10027 0.89582 1.26106 1.01397 0.95673 0.97938 1.69686 1.26003 1.31224 1.28695 0.84817 0.77306 0.78192 0.77689 1.19475 1.19751 1.19684 1.22521 1.05345 0.93522 0.97716 1.21322 0.77379 0.87684 0.83939 1.90714 1.56514 1.19798 1.78470 0.93518 0.89931 0.90719 0.93580 0.90638 0.93770 0.90586 0.89986 0.93204 0.87532 0.89461 0.90377 0.91675 0.75328 0.75229 0.89137 0.88978 0.76693 0.91123 0.87558 0.87355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.54 71.98 0.61 -0.69 16 2 C 0.17 1.93 1.20 3.60 0.00 1.93 16 3 C -0.13 -2.20 7.00 71.98 0.50 -1.70 16 4 C -0.15 -1.18 8.49 71.98 0.61 -0.57 16 5 N -0.61 -7.86 2.76 -771.06 -2.13 -9.99 16 6 C 0.11 0.77 6.16 86.83 0.54 1.30 16 7 C -0.09 -0.77 3.16 -9.74 -0.03 -0.80 16 8 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 9 C 0.15 1.99 4.98 86.38 0.43 2.42 16 10 N -0.73 -13.09 5.50 -478.53 -2.63 -15.72 16 11 C 0.70 19.94 8.57 179.06 1.53 21.47 16 12 O -0.63 -22.35 16.34 -4.01 -0.07 -22.41 16 13 N -0.73 -22.24 5.53 -482.29 -2.67 -24.91 16 14 C 0.14 5.02 6.15 85.63 0.53 5.55 16 15 C 0.43 19.53 7.85 87.66 0.69 20.22 16 16 O -0.62 -31.47 15.24 -3.08 -0.05 -31.52 16 17 N -0.56 -27.68 5.29 -306.98 -1.62 -29.31 16 18 C -0.34 -18.33 9.68 84.04 0.81 -17.52 16 19 H 0.09 4.95 7.16 -2.91 -0.02 4.93 16 20 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 21 N -0.92 -48.22 13.05 21.66 0.28 -47.94 16 22 Si 1.00 41.44 29.55 68.60 2.03 43.46 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 25 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 26 C -0.15 -1.92 6.36 30.59 0.19 -1.73 16 27 C 0.51 9.53 7.84 87.90 0.69 10.21 16 28 O -0.57 -15.75 13.99 -3.01 -0.04 -15.79 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.07 0.45 7.90 -2.39 -0.02 0.43 16 32 H 0.05 0.95 7.08 -2.39 -0.02 0.94 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.04 0.93 7.06 -2.39 -0.02 0.92 16 35 H 0.08 0.37 7.21 -2.39 -0.02 0.36 16 36 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 37 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.11 0.34 7.12 -2.39 -0.02 0.33 16 39 H 0.09 0.51 7.89 -2.38 -0.02 0.50 16 40 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.06 0.99 7.93 -2.39 -0.02 0.97 16 42 H 0.41 5.45 8.49 -92.71 -0.79 4.66 16 43 H 0.41 12.20 7.45 -92.71 -0.69 11.51 16 44 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 45 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 46 H 0.40 18.95 7.90 -92.71 -0.73 18.22 16 47 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 48 H 0.11 1.43 7.75 -2.39 -0.02 1.41 16 49 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 Total: -1.00 -74.50 400.73 -0.53 -75.03 By element: Atomic # 1 Polarization: 40.28 SS G_CDS: -1.22 Total: 39.06 kcal Atomic # 6 Polarization: 32.45 SS G_CDS: 7.58 Total: 40.03 kcal Atomic # 7 Polarization: -119.10 SS G_CDS: -8.77 Total: -127.86 kcal Atomic # 8 Polarization: -69.56 SS G_CDS: -0.15 Total: -69.72 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.46 kcal Total: -74.50 -0.53 -75.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596598493.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.050 kcal (2) G-P(sol) polarization free energy of solvation -74.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.31 seconds