Wall clock time and date at job start Sat Apr 11 2020 06:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00213 * 2 1 4 4 H 1.48503 * 109.47218 * 269.99841 * 3 2 1 5 5 H 1.48493 * 109.47419 * 29.99519 * 3 2 1 6 6 H 1.48501 * 109.47287 * 149.99958 * 3 2 1 7 7 C 1.37880 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99760 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99857 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46846 * 179.97438 * 9 7 2 11 11 C 1.46908 * 111.00109 * 169.99768 * 10 9 7 12 12 C 1.53228 * 109.34152 * 187.25795 * 11 10 9 13 13 N 1.47080 * 108.52048 * 306.16850 * 12 11 10 14 14 C 1.34776 * 120.88436 * 231.18783 * 13 12 11 15 15 O 1.21588 * 120.00345 * 184.99897 * 14 13 12 16 16 N 1.34780 * 119.99818 * 4.99558 * 14 13 12 17 17 C 1.46505 * 120.00038 * 174.91833 * 16 14 13 18 18 C 1.50698 * 109.47050 * 180.02562 * 17 16 14 19 19 O 1.21278 * 120.00002 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99605 * 180.02562 * 18 17 16 21 21 C 1.47165 * 120.94506 * 359.92809 * 20 18 17 22 22 C 1.53300 * 108.37758 * 230.51723 * 21 20 18 23 23 O 1.42957 * 109.26387 * 307.77726 * 22 21 20 24 24 C 1.42967 * 114.17059 * 62.55575 * 23 22 21 25 25 C 1.47152 * 120.97959 * 180.02562 * 20 18 17 26 26 C 1.47077 * 118.23604 * 51.46134 * 13 12 11 27 27 C 1.46893 * 111.00486 * 294.30244 * 10 9 7 28 28 H 0.97005 * 119.99957 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47536 * 59.99730 * 9 7 2 30 30 H 1.08996 * 109.47216 * 299.99613 * 9 7 2 31 31 H 1.09000 * 109.48675 * 67.29306 * 11 10 9 32 32 H 1.09001 * 109.48804 * 307.21674 * 11 10 9 33 33 H 1.08997 * 109.62881 * 186.46429 * 12 11 10 34 34 H 1.08995 * 109.63136 * 65.87894 * 12 11 10 35 35 H 0.96999 * 120.00233 * 354.92136 * 16 14 13 36 36 H 1.08999 * 109.47014 * 59.99877 * 17 16 14 37 37 H 1.08998 * 109.47031 * 300.00239 * 17 16 14 38 38 H 1.09006 * 109.64297 * 110.82527 * 21 20 18 39 39 H 1.08993 * 109.72905 * 350.26609 * 21 20 18 40 40 H 1.08999 * 109.51354 * 187.82719 * 22 21 20 41 41 H 1.09004 * 109.50775 * 67.72688 * 22 21 20 42 42 H 1.09007 * 109.51158 * 57.33660 * 24 23 22 43 43 H 1.08991 * 109.51512 * 177.44386 * 24 23 22 44 44 H 1.09004 * 109.68575 * 9.70670 * 25 20 18 45 45 H 1.09005 * 109.68205 * 249.15406 * 25 20 18 46 46 H 1.09002 * 109.62900 * 68.25059 * 26 13 12 47 47 H 1.09002 * 109.62790 * 188.83157 * 26 13 12 48 48 H 1.09006 * 109.49549 * 292.70972 * 27 10 9 49 49 H 1.09001 * 109.49563 * 52.78285 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5210 -4.8936 0.2387 12 6 2.5634 -6.0032 0.4116 13 7 3.4613 -5.9863 -0.7532 14 6 3.7116 -7.1125 -1.4501 15 8 4.5255 -7.1003 -2.3533 16 7 3.0597 -8.2522 -1.1457 17 6 3.2481 -9.4470 -1.9724 18 6 2.4132 -10.5748 -1.4228 19 8 1.7287 -10.3982 -0.4374 20 7 2.4282 -11.7800 -2.0259 21 6 3.2508 -12.0171 -3.2229 22 6 2.3650 -12.6545 -4.2996 23 8 1.6997 -13.7939 -3.7493 24 6 0.8149 -13.4897 -2.6684 25 6 1.6211 -12.8961 -1.5080 26 6 4.0835 -4.7092 -1.1337 27 6 2.9766 -3.6492 -1.2493 28 1 -0.4850 0.8401 -0.0004 29 1 0.6245 -2.5571 -0.8897 30 1 0.6239 -2.5567 0.8903 31 1 0.8794 -5.1263 -0.6111 32 1 0.9158 -4.8190 1.1423 33 1 2.0628 -6.9694 0.4740 34 1 3.1391 -5.8265 1.3202 35 1 2.4658 -8.2814 -0.3793 36 1 4.2995 -9.7341 -1.9617 37 1 2.9403 -9.2328 -2.9959 38 1 4.0711 -12.6912 -2.9761 39 1 3.6497 -11.0710 -3.5885 40 1 2.9826 -12.9652 -5.1422 41 1 1.6251 -11.9293 -4.6384 42 1 0.0693 -12.7671 -3.0005 43 1 0.3167 -14.4011 -2.3381 44 1 0.9414 -12.5314 -0.7377 45 1 2.2765 -13.6594 -1.0885 46 1 4.8025 -4.4105 -0.3708 47 1 4.5884 -4.8194 -2.0935 48 1 2.3147 -3.8993 -2.0785 49 1 3.4271 -2.6723 -1.4250 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601589318.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:55 Heat of formation + Delta-G solvation = -75.611895 kcal Electronic energy + Delta-G solvation = -30000.500327 eV Core-core repulsion = 25770.718947 eV Total energy + Delta-G solvation = -4229.781380 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 3.71 seconds Orbital eigenvalues (eV) -41.02356 -40.13580 -38.83257 -37.60798 -35.37040 -34.67417 -34.37097 -32.40839 -32.11906 -30.75418 -29.34966 -28.27791 -27.07407 -25.38708 -24.60595 -23.24192 -22.65482 -22.09393 -20.75461 -20.02289 -19.43349 -18.22397 -17.47278 -16.97725 -16.62020 -16.46432 -16.30858 -16.00741 -15.64740 -15.56192 -15.21940 -14.92560 -14.58372 -14.39132 -14.21506 -14.03890 -13.80050 -13.61162 -13.42104 -13.22089 -13.10008 -12.54946 -12.40023 -12.18773 -11.99608 -11.97564 -11.33883 -11.28776 -11.13913 -10.82414 -10.79426 -10.74663 -10.62692 -10.52260 -10.35718 -10.07824 -9.85463 -9.35145 -9.25885 -9.17435 -8.48572 -8.35329 -7.31715 -6.05678 -4.07426 2.01978 2.08854 2.74490 3.21652 3.22365 3.30717 3.37152 3.41315 3.83076 3.89426 4.10880 4.35413 4.39716 4.45753 4.54566 4.64168 4.79806 4.84699 4.95714 4.97536 5.01572 5.12598 5.17930 5.24284 5.29426 5.31920 5.39430 5.45332 5.65505 5.73952 5.83648 5.92037 6.04875 6.21433 6.22731 6.42069 6.48137 6.55419 6.66696 6.68878 7.02152 7.22894 7.28965 7.51026 7.74861 7.94767 8.02023 8.12924 8.48281 8.59134 8.99895 9.57076 11.05136 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026394 B = 0.001917 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.591644 B =14606.382476 C =14965.094423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.041 3.959 12 C 0.116 3.884 13 N -0.622 5.622 14 C 0.712 3.288 15 O -0.598 6.598 16 N -0.742 5.742 17 C 0.124 3.876 18 C 0.515 3.485 19 O -0.531 6.531 20 N -0.615 5.615 21 C 0.068 3.932 22 C 0.046 3.954 23 O -0.379 6.379 24 C 0.047 3.953 25 C 0.077 3.923 26 C 0.133 3.867 27 C 0.050 3.950 28 H 0.261 0.739 29 H -0.009 1.009 30 H 0.032 0.968 31 H 0.027 0.973 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.407 0.593 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.109 0.891 44 H 0.104 0.896 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.089 0.911 48 H 0.024 0.976 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.511 -28.213 -5.943 29.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.547 4.547 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.089 4.089 12 C -0.007 4.007 13 N -0.358 5.358 14 C 0.413 3.587 15 O -0.478 6.478 16 N -0.404 5.404 17 C -0.005 4.005 18 C 0.303 3.697 19 O -0.407 6.407 20 N -0.351 5.351 21 C -0.055 4.055 22 C -0.032 4.032 23 O -0.297 6.297 24 C -0.030 4.030 25 C -0.045 4.045 26 C 0.011 3.989 27 C -0.079 4.079 28 H 0.071 0.929 29 H 0.009 0.991 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.247 0.753 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.119 0.881 40 H 0.128 0.872 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.127 0.873 44 H 0.122 0.878 45 H 0.097 0.903 46 H 0.090 0.910 47 H 0.107 0.893 48 H 0.043 0.957 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.913 -28.070 -5.742 29.069 hybrid contribution -0.620 1.006 -0.184 1.196 sum 4.292 -27.064 -5.926 28.035 Atomic orbital electron populations 1.69959 1.06092 1.26836 1.50867 1.25000 0.94879 0.99387 0.95381 0.86484 0.79805 0.83010 0.78046 1.20731 1.21286 1.19722 1.21143 0.93514 0.89844 1.50235 0.91745 1.19727 0.90006 0.87211 0.96179 1.62080 1.27913 1.02471 1.33547 1.22378 0.94730 0.90831 1.00927 1.21816 0.91893 0.98479 0.88540 1.47383 1.49391 1.07749 1.31289 1.15678 0.80941 0.80046 0.82022 1.90883 1.37924 1.84752 1.34192 1.44933 1.51567 1.09522 1.34379 1.20825 1.00264 0.83776 0.95613 1.20662 0.82187 0.83312 0.83556 1.90711 1.42250 1.81888 1.25841 1.48041 1.46439 1.10932 1.29657 1.22583 0.94318 1.03053 0.85586 1.23008 0.95800 0.88947 0.95404 1.87989 1.59921 1.31859 1.49938 1.23011 0.91666 1.01608 0.86739 1.22331 0.95788 0.88698 0.97731 1.21865 0.95395 0.80357 1.01317 1.22458 0.95192 0.99176 0.91054 0.92897 0.99140 0.95031 0.95522 0.90024 0.90976 0.90460 0.75259 0.88393 0.88650 0.89747 0.88112 0.87157 0.92255 0.92384 0.87330 0.87773 0.90316 0.91015 0.89303 0.95734 0.88430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 2 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 7 C -0.51 -13.98 8.41 -34.44 -0.29 -14.27 16 8 H 0.06 1.74 7.13 -52.49 -0.37 1.37 16 9 C 0.19 4.94 4.72 -4.98 -0.02 4.92 16 10 N -0.53 -11.18 4.62 -235.47 -1.09 -12.27 16 11 C 0.04 0.71 5.62 -3.70 -0.02 0.69 16 12 C 0.12 1.66 6.59 -3.61 -0.02 1.63 16 13 N -0.62 -9.75 3.00 -177.92 -0.53 -10.28 16 14 C 0.71 11.10 8.31 -86.92 -0.72 10.37 16 15 O -0.60 -10.80 15.83 5.29 0.08 -10.72 16 16 N -0.74 -9.34 5.44 -66.41 -0.36 -9.70 16 17 C 0.12 1.20 4.53 -5.19 -0.02 1.17 16 18 C 0.51 5.00 7.78 -10.99 -0.09 4.91 16 19 O -0.53 -6.80 15.14 5.56 0.08 -6.71 16 20 N -0.61 -4.44 3.02 -172.29 -0.52 -4.96 16 21 C 0.07 0.32 6.54 -3.52 -0.02 0.29 16 22 C 0.05 0.21 6.98 37.31 0.26 0.47 16 23 O -0.38 -2.54 10.74 -35.23 -0.38 -2.92 16 24 C 0.05 0.26 6.98 37.29 0.26 0.52 16 25 C 0.08 0.49 6.64 -3.55 -0.02 0.46 16 26 C 0.13 2.21 6.61 -3.37 -0.02 2.19 16 27 C 0.05 0.97 5.47 -3.47 -0.02 0.95 16 28 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 29 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 30 H 0.03 0.86 7.97 -51.93 -0.41 0.44 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 1.36 7.99 -51.93 -0.41 0.94 16 33 H 0.07 0.87 5.63 -51.93 -0.29 0.57 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.41 5.02 4.93 -40.82 -0.20 4.82 16 36 H 0.10 0.85 8.02 -51.93 -0.42 0.44 16 37 H 0.10 0.84 7.65 -51.93 -0.40 0.44 16 38 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.10 0.36 6.05 -51.93 -0.31 0.04 16 40 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.10 0.76 7.08 -51.93 -0.37 0.39 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.09 1.46 7.09 -51.93 -0.37 1.09 16 48 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.10 1.99 6.67 -51.93 -0.35 1.64 16 LS Contribution 386.65 15.07 5.83 5.83 Total: -1.00 -34.65 386.65 -9.72 -44.37 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -7.69 Total: 0.93 kcal Atomic # 6 Polarization: 16.61 SS G_CDS: -0.85 Total: 15.76 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: -1.77 Total: -62.91 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.21 Total: -20.35 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.65 -9.72 -44.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601589318.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.245 kcal (2) G-P(sol) polarization free energy of solvation -34.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.71 seconds