Wall clock time and date at job start Sat Apr 11 2020 06:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00213 * 2 1 4 4 H 1.48503 * 109.47218 * 269.99841 * 3 2 1 5 5 H 1.48493 * 109.47419 * 29.99519 * 3 2 1 6 6 H 1.48501 * 109.47287 * 149.99958 * 3 2 1 7 7 C 1.37880 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99760 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99857 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46846 * 179.97438 * 9 7 2 11 11 C 1.46908 * 111.00109 * 169.99768 * 10 9 7 12 12 C 1.53228 * 109.34152 * 187.25795 * 11 10 9 13 13 N 1.47080 * 108.52048 * 306.16850 * 12 11 10 14 14 C 1.34776 * 120.88436 * 231.18783 * 13 12 11 15 15 O 1.21588 * 120.00345 * 184.99897 * 14 13 12 16 16 N 1.34780 * 119.99818 * 4.99558 * 14 13 12 17 17 C 1.46505 * 120.00038 * 174.91833 * 16 14 13 18 18 C 1.50698 * 109.47050 * 180.02562 * 17 16 14 19 19 O 1.21278 * 120.00002 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99605 * 180.02562 * 18 17 16 21 21 C 1.47165 * 120.94506 * 359.92809 * 20 18 17 22 22 C 1.53300 * 108.37758 * 230.51723 * 21 20 18 23 23 O 1.42957 * 109.26387 * 307.77726 * 22 21 20 24 24 C 1.42967 * 114.17059 * 62.55575 * 23 22 21 25 25 C 1.47152 * 120.97959 * 180.02562 * 20 18 17 26 26 C 1.47077 * 118.23604 * 51.46134 * 13 12 11 27 27 C 1.46893 * 111.00486 * 294.30244 * 10 9 7 28 28 H 0.97005 * 119.99957 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47536 * 59.99730 * 9 7 2 30 30 H 1.08996 * 109.47216 * 299.99613 * 9 7 2 31 31 H 1.09000 * 109.48675 * 67.29306 * 11 10 9 32 32 H 1.09001 * 109.48804 * 307.21674 * 11 10 9 33 33 H 1.08997 * 109.62881 * 186.46429 * 12 11 10 34 34 H 1.08995 * 109.63136 * 65.87894 * 12 11 10 35 35 H 0.96999 * 120.00233 * 354.92136 * 16 14 13 36 36 H 1.08999 * 109.47014 * 59.99877 * 17 16 14 37 37 H 1.08998 * 109.47031 * 300.00239 * 17 16 14 38 38 H 1.09006 * 109.64297 * 110.82527 * 21 20 18 39 39 H 1.08993 * 109.72905 * 350.26609 * 21 20 18 40 40 H 1.08999 * 109.51354 * 187.82719 * 22 21 20 41 41 H 1.09004 * 109.50775 * 67.72688 * 22 21 20 42 42 H 1.09007 * 109.51158 * 57.33660 * 24 23 22 43 43 H 1.08991 * 109.51512 * 177.44386 * 24 23 22 44 44 H 1.09004 * 109.68575 * 9.70670 * 25 20 18 45 45 H 1.09005 * 109.68205 * 249.15406 * 25 20 18 46 46 H 1.09002 * 109.62900 * 68.25059 * 26 13 12 47 47 H 1.09002 * 109.62790 * 188.83157 * 26 13 12 48 48 H 1.09006 * 109.49549 * 292.70972 * 27 10 9 49 49 H 1.09001 * 109.49563 * 52.78285 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5210 -4.8936 0.2387 12 6 2.5634 -6.0032 0.4116 13 7 3.4613 -5.9863 -0.7532 14 6 3.7116 -7.1125 -1.4501 15 8 4.5255 -7.1003 -2.3533 16 7 3.0597 -8.2522 -1.1457 17 6 3.2481 -9.4470 -1.9724 18 6 2.4132 -10.5748 -1.4228 19 8 1.7287 -10.3982 -0.4374 20 7 2.4282 -11.7800 -2.0259 21 6 3.2508 -12.0171 -3.2229 22 6 2.3650 -12.6545 -4.2996 23 8 1.6997 -13.7939 -3.7493 24 6 0.8149 -13.4897 -2.6684 25 6 1.6211 -12.8961 -1.5080 26 6 4.0835 -4.7092 -1.1337 27 6 2.9766 -3.6492 -1.2493 28 1 -0.4850 0.8401 -0.0004 29 1 0.6245 -2.5571 -0.8897 30 1 0.6239 -2.5567 0.8903 31 1 0.8794 -5.1263 -0.6111 32 1 0.9158 -4.8190 1.1423 33 1 2.0628 -6.9694 0.4740 34 1 3.1391 -5.8265 1.3202 35 1 2.4658 -8.2814 -0.3793 36 1 4.2995 -9.7341 -1.9617 37 1 2.9403 -9.2328 -2.9959 38 1 4.0711 -12.6912 -2.9761 39 1 3.6497 -11.0710 -3.5885 40 1 2.9826 -12.9652 -5.1422 41 1 1.6251 -11.9293 -4.6384 42 1 0.0693 -12.7671 -3.0005 43 1 0.3167 -14.4011 -2.3381 44 1 0.9414 -12.5314 -0.7377 45 1 2.2765 -13.6594 -1.0885 46 1 4.8025 -4.4105 -0.3708 47 1 4.5884 -4.8194 -2.0935 48 1 2.3147 -3.8993 -2.0785 49 1 3.4271 -2.6723 -1.4250 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601589318.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:45 Heat of formation + Delta-G solvation = -102.331637 kcal Electronic energy + Delta-G solvation = -30001.658982 eV Core-core repulsion = 25770.718947 eV Total energy + Delta-G solvation = -4230.940035 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 6.54 seconds Orbital eigenvalues (eV) -41.83879 -41.16745 -39.52227 -39.01642 -36.03598 -35.93604 -35.69723 -34.36625 -32.62856 -32.08504 -30.43140 -29.53218 -28.05218 -26.99399 -25.11464 -24.58088 -23.95952 -23.18878 -22.17656 -20.92136 -20.37462 -19.36304 -18.50312 -18.22343 -17.65670 -17.35777 -17.23326 -16.91111 -16.60547 -16.48660 -16.13835 -16.01697 -15.92861 -15.69030 -15.37423 -15.25426 -15.11391 -14.90470 -14.41739 -14.34249 -14.04022 -13.63332 -13.51187 -13.47027 -13.09047 -12.84902 -12.74513 -12.58580 -12.39099 -12.37500 -12.31755 -12.17419 -11.82193 -11.75380 -11.42484 -11.30832 -11.21211 -11.06681 -10.61903 -10.41606 -9.74976 -9.65601 -9.05644 -8.20407 -6.30278 1.28287 1.30016 1.43077 1.43946 1.55717 1.82845 2.01070 2.41087 2.78123 2.84314 3.11797 3.17626 3.23134 3.70448 3.90878 3.93238 4.03734 4.07973 4.10248 4.12493 4.19780 4.23795 4.26376 4.28148 4.42229 4.44783 4.55860 4.63220 4.70437 4.73828 4.81838 4.83283 4.90722 4.94305 5.00628 5.14652 5.18518 5.20767 5.28923 5.40642 5.63939 5.82798 6.03018 6.06377 6.08445 6.25398 6.56554 6.77348 6.83775 6.85426 7.39186 7.39552 8.90764 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026394 B = 0.001917 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.591644 B =14606.382476 C =14965.094423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.522 4.522 8 H 0.067 0.933 9 C 0.208 3.792 10 N -0.538 5.538 11 C 0.039 3.961 12 C 0.127 3.873 13 N -0.627 5.627 14 C 0.712 3.288 15 O -0.623 6.623 16 N -0.735 5.735 17 C 0.122 3.878 18 C 0.516 3.484 19 O -0.568 6.568 20 N -0.610 5.610 21 C 0.064 3.936 22 C 0.043 3.957 23 O -0.394 6.394 24 C 0.051 3.949 25 C 0.075 3.925 26 C 0.146 3.854 27 C 0.055 3.945 28 H 0.264 0.736 29 H -0.042 1.042 30 H 0.009 0.991 31 H 0.018 0.982 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.409 0.591 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.114 0.886 40 H 0.131 0.869 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.126 0.874 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.081 0.919 47 H 0.092 0.908 48 H 0.011 0.989 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.096 -29.498 -6.221 30.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.560 4.560 8 H 0.085 0.915 9 C 0.082 3.918 10 N -0.262 5.262 11 C -0.090 4.090 12 C 0.004 3.996 13 N -0.363 5.363 14 C 0.413 3.587 15 O -0.504 6.504 16 N -0.396 5.396 17 C -0.005 4.005 18 C 0.304 3.696 19 O -0.447 6.447 20 N -0.344 5.344 21 C -0.058 4.058 22 C -0.034 4.034 23 O -0.313 6.313 24 C -0.027 4.027 25 C -0.047 4.047 26 C 0.023 3.977 27 C -0.074 4.074 28 H 0.073 0.927 29 H -0.024 1.024 30 H 0.028 0.972 31 H 0.036 0.964 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.250 0.750 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.115 0.885 39 H 0.132 0.868 40 H 0.149 0.851 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.144 0.856 44 H 0.110 0.890 45 H 0.107 0.893 46 H 0.099 0.901 47 H 0.110 0.890 48 H 0.029 0.971 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.509 -29.427 -6.040 30.738 hybrid contribution -1.148 1.287 -0.146 1.731 sum 5.361 -28.140 -6.186 29.306 Atomic orbital electron populations 1.70088 1.07772 1.27886 1.51809 1.25928 0.95737 1.03269 0.94850 0.85365 0.78618 0.78200 0.78336 1.19968 1.20957 1.18685 1.21465 0.93786 0.90847 1.49936 0.91457 1.19380 0.90042 0.88841 0.93517 1.62003 1.27022 1.02862 1.34347 1.22490 0.95672 0.90063 1.00781 1.21806 0.91036 0.98361 0.88422 1.47394 1.49601 1.07615 1.31726 1.15729 0.80888 0.80490 0.81578 1.90864 1.39125 1.85228 1.35215 1.44904 1.50640 1.09500 1.34516 1.21014 1.01189 0.82739 0.95602 1.20638 0.81796 0.83935 0.83202 1.90696 1.43908 1.82582 1.27542 1.48140 1.46140 1.10277 1.29887 1.22806 0.94283 1.04105 0.84557 1.23168 0.95901 0.88489 0.95862 1.87972 1.60195 1.32934 1.50176 1.23046 0.91254 1.02244 0.86130 1.22410 0.95863 0.88503 0.97927 1.21650 0.94166 0.79975 1.01923 1.22404 0.95467 0.99664 0.89843 0.92737 1.02412 0.97245 0.96413 0.89443 0.88286 0.89296 0.75043 0.86966 0.87505 0.88473 0.86819 0.85073 0.92572 0.92987 0.85574 0.88996 0.89313 0.90081 0.88977 0.97111 0.89860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.10 13.29 21.45 0.28 -55.82 16 2 C 0.00 0.01 5.46 84.66 0.46 0.47 16 3 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 7 C -0.52 -29.13 8.41 25.60 0.22 -28.91 16 8 H 0.07 3.64 7.13 -2.91 -0.02 3.62 16 9 C 0.21 11.00 4.72 85.55 0.40 11.40 16 10 N -0.54 -22.72 4.62 -898.90 -4.15 -26.87 16 11 C 0.04 1.35 5.62 86.38 0.49 1.83 16 12 C 0.13 3.40 6.59 86.35 0.57 3.97 16 13 N -0.63 -18.74 3.00 -835.08 -2.51 -21.25 16 14 C 0.71 20.99 8.31 179.05 1.49 22.48 16 15 O -0.62 -21.48 15.83 -3.99 -0.06 -21.54 16 16 N -0.73 -17.18 5.44 -482.29 -2.63 -19.81 16 17 C 0.12 2.12 4.53 85.63 0.39 2.51 16 18 C 0.52 9.32 7.78 87.66 0.68 10.00 16 19 O -0.57 -14.14 15.14 -3.02 -0.05 -14.18 16 20 N -0.61 -7.84 3.02 -817.38 -2.47 -10.31 16 21 C 0.06 0.45 6.54 86.35 0.56 1.02 16 22 C 0.04 0.31 6.98 72.08 0.50 0.81 16 23 O -0.39 -4.59 10.74 -148.98 -1.60 -6.19 16 24 C 0.05 0.48 6.98 72.07 0.50 0.99 16 25 C 0.08 0.87 6.64 86.34 0.57 1.44 16 26 C 0.15 4.69 6.61 86.50 0.57 5.26 16 27 C 0.06 2.16 5.47 86.54 0.47 2.63 16 28 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 29 H -0.04 -2.44 8.12 -2.38 -0.02 -2.46 16 30 H 0.01 0.53 7.97 -2.39 -0.02 0.51 16 31 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.09 2.89 7.99 -2.39 -0.02 2.87 16 33 H 0.10 2.16 5.63 -2.39 -0.01 2.15 16 34 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.41 9.37 4.93 -92.71 -0.46 8.91 16 36 H 0.11 1.68 8.02 -2.39 -0.02 1.66 16 37 H 0.11 1.65 7.65 -2.39 -0.02 1.63 16 38 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 39 H 0.11 0.51 6.05 -2.39 -0.01 0.49 16 40 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 42 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 43 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.09 1.31 7.08 -2.39 -0.02 1.30 16 45 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 46 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 47 H 0.09 2.93 7.09 -2.39 -0.02 2.92 16 48 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 49 H 0.08 3.45 6.67 -2.39 -0.02 3.44 16 Total: -1.00 -75.05 386.65 -2.76 -77.82 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.51 Total: 16.26 kcal Atomic # 6 Polarization: 28.02 SS G_CDS: 7.88 Total: 35.90 kcal Atomic # 7 Polarization: -122.59 SS G_CDS: -11.47 Total: -134.06 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -1.71 Total: -41.91 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -75.05 -2.76 -77.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601589318.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.515 kcal (2) G-P(sol) polarization free energy of solvation -75.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.55 seconds