Wall clock time and date at job start Sat Apr 11 2020 06:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35245 * 126.07076 * 2 1 4 4 C 1.40394 * 107.86460 * 180.14336 * 3 2 1 5 5 N 1.40197 * 125.97099 * 179.83212 * 4 3 2 6 6 C 1.34779 * 120.00092 * 359.71146 * 5 4 3 7 7 O 1.21597 * 119.99474 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00586 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99641 * 359.97438 * 8 6 5 10 10 C 1.53005 * 109.47166 * 276.24843 * 9 8 6 11 11 H 1.08999 * 109.47203 * 305.30799 * 10 9 8 12 12 C 1.53005 * 109.47233 * 185.30644 * 10 9 8 13 13 O 1.42898 * 109.47164 * 65.30778 * 10 9 8 14 14 C 1.46492 * 120.00508 * 180.02562 * 8 6 5 15 15 H 1.09003 * 109.47178 * 3.24217 * 14 8 6 16 16 C 1.53001 * 109.47278 * 243.24098 * 14 8 6 17 17 C 1.52995 * 109.47548 * 123.24000 * 14 8 6 18 18 O 1.42907 * 109.47185 * 66.42773 * 17 14 8 19 19 N 1.31212 * 108.05990 * 359.56290 * 4 3 2 20 20 N 1.34964 * 126.06996 * 179.66195 * 2 1 3 21 21 C 1.46502 * 125.97887 * 359.97438 * 20 2 1 22 22 C 1.50702 * 109.47147 * 270.00244 * 21 20 2 23 23 H 1.08007 * 119.99398 * 359.97438 * 22 21 20 24 24 C 1.37874 * 120.00386 * 179.97438 * 22 21 20 25 25 N 1.31519 * 119.99685 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 120.00216 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47165 * 90.00623 * 26 24 22 28 28 H 1.48508 * 109.47230 * 209.99767 * 26 24 22 29 29 H 1.48498 * 109.47245 * 330.00339 * 26 24 22 30 30 H 1.09003 * 109.46859 * 270.33616 * 1 2 3 31 31 H 1.08996 * 109.47844 * 30.33793 * 1 2 3 32 32 H 1.09003 * 109.47674 * 150.34575 * 1 2 3 33 33 H 1.07999 * 126.06091 * 359.97020 * 3 2 1 34 34 H 0.96996 * 120.00113 * 179.71572 * 5 4 3 35 35 H 1.09001 * 109.47736 * 156.24819 * 9 8 6 36 36 H 1.09002 * 109.47499 * 36.24539 * 9 8 6 37 37 H 1.08999 * 109.46627 * 300.00161 * 12 10 9 38 38 H 1.08998 * 109.47187 * 60.00146 * 12 10 9 39 39 H 1.09000 * 109.47126 * 180.02562 * 12 10 9 40 40 H 0.96699 * 114.00390 * 180.02562 * 13 10 9 41 41 H 1.09003 * 109.46682 * 59.99685 * 16 14 8 42 42 H 1.09000 * 109.47243 * 179.97438 * 16 14 8 43 43 H 1.08994 * 109.47169 * 300.00312 * 16 14 8 44 44 H 1.08999 * 109.47601 * 186.42920 * 17 14 8 45 45 H 1.09005 * 109.47189 * 306.42973 * 17 14 8 46 46 H 0.96693 * 114.00226 * 180.02562 * 18 17 14 47 47 H 1.09003 * 109.47085 * 29.99642 * 21 20 2 48 48 H 1.08997 * 109.47470 * 149.99574 * 21 20 2 49 49 H 0.96999 * 120.00128 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6369 0.6545 -0.0033 5 7 4.7737 1.4751 -0.0078 6 6 4.6370 2.8159 -0.0150 7 8 3.5276 3.3138 -0.0172 8 7 5.7297 3.6048 -0.0198 9 6 7.0662 3.0049 -0.0165 10 6 7.4674 2.6611 1.4194 11 1 7.3845 3.5513 2.0429 12 6 8.9122 2.1577 1.4387 13 8 6.6016 1.6430 1.9252 14 6 5.5811 5.0621 -0.0271 15 1 4.5235 5.3198 0.0305 16 6 6.1745 5.6289 -1.3184 17 6 6.3167 5.6559 1.1758 18 8 7.7224 5.4476 1.0249 19 7 3.6336 -0.6576 0.0042 20 7 2.3016 -1.0909 0.0064 21 6 1.8501 -2.4846 0.0152 22 6 1.6957 -2.9537 1.4390 23 1 1.9127 -2.2810 2.2557 24 6 1.2775 -4.2414 1.6991 25 7 1.0128 -5.0603 0.7046 26 14 1.0869 -4.8231 3.4639 27 1 -0.2954 -4.5452 3.9301 28 1 1.3489 -6.2831 3.5350 29 1 2.0554 -4.1035 4.3296 30 1 -0.3633 0.0060 1.0277 31 1 -0.3635 0.8869 -0.5190 32 1 -0.3634 -0.8931 -0.5084 33 1 1.9719 2.1211 -0.0005 34 1 5.6586 1.0779 -0.0057 35 1 7.7829 3.7117 -0.4346 36 1 7.0582 2.0964 -0.6188 37 1 8.9951 1.2675 0.8152 38 1 9.5727 2.9343 1.0529 39 1 9.1979 1.9124 2.4616 40 1 6.7980 1.3750 2.8333 41 1 5.6503 5.2058 -2.1754 42 1 6.0635 6.7132 -1.3240 43 1 7.2320 5.3712 -1.3759 44 1 6.1122 6.7249 1.2354 45 1 5.9732 5.1689 2.0885 46 1 8.2526 5.7990 1.7531 47 1 0.8912 -2.5591 -0.4978 48 1 2.5845 -3.1077 -0.4951 49 1 0.7190 -5.9665 0.8875 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615501378.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:00 Heat of formation + Delta-G solvation = -41.964737 kcal Electronic energy + Delta-G solvation = -31205.658830 eV Core-core repulsion = 26977.336500 eV Total energy + Delta-G solvation = -4228.322330 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 6.60 seconds Orbital eigenvalues (eV) -40.79990 -39.94270 -37.96851 -37.24697 -35.27537 -34.55262 -33.29925 -32.18974 -31.30537 -30.84497 -30.18962 -26.86396 -26.64576 -26.26932 -26.14402 -23.25960 -22.11563 -21.80017 -20.06668 -19.57126 -18.98117 -18.11602 -17.62361 -17.06596 -16.59270 -16.28285 -15.81222 -15.62355 -15.00008 -14.65446 -14.51427 -14.41509 -14.29424 -14.13881 -13.78965 -13.49856 -13.02884 -12.88306 -12.76114 -12.50822 -12.39529 -12.31675 -12.26940 -12.12343 -12.00091 -11.70891 -11.44079 -11.28598 -11.21531 -11.11299 -10.99629 -10.76158 -10.41255 -10.29421 -10.13238 -10.04005 -9.78426 -9.42973 -9.38452 -8.73036 -8.57497 -7.71708 -7.20326 -6.18061 -4.25179 2.50142 2.81888 3.25086 3.26428 3.31604 3.37633 3.57738 3.88695 4.04913 4.11949 4.27991 4.39445 4.62425 4.72242 4.79904 4.84870 5.01441 5.04414 5.15193 5.18665 5.22343 5.30765 5.46261 5.54497 5.55425 5.67087 5.75270 5.78514 5.87803 5.95339 6.03812 6.10730 6.21642 6.32870 6.48793 6.64162 6.78305 6.88141 7.06433 7.15137 7.18537 7.25150 7.57422 7.72730 7.76418 7.98300 8.13351 8.22115 8.80071 8.83998 8.92408 9.40545 10.88895 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016333 B = 0.002838 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.909747 B = 9865.415055 C =10863.271937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.088 3.912 3 C -0.291 4.291 4 C 0.288 3.712 5 N -0.626 5.626 6 C 0.721 3.279 7 O -0.577 6.577 8 N -0.617 5.617 9 C 0.124 3.876 10 C 0.081 3.919 11 H 0.066 0.934 12 C -0.182 4.182 13 O -0.562 6.562 14 C 0.156 3.844 15 H 0.115 0.885 16 C -0.157 4.157 17 C 0.066 3.934 18 O -0.566 6.566 19 N -0.324 5.324 20 N -0.322 5.322 21 C 0.260 3.740 22 C -0.532 4.532 23 H 0.064 0.936 24 C 0.064 3.936 25 N -0.893 5.893 26 Si 0.906 3.094 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.158 0.842 34 H 0.411 0.589 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.378 0.622 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.375 0.625 47 H 0.053 0.947 48 H 0.050 0.950 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.478 21.978 0.125 26.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.044 4.044 3 C -0.322 4.322 4 C 0.034 3.966 5 N -0.276 5.276 6 C 0.422 3.578 7 O -0.454 6.454 8 N -0.354 5.354 9 C 0.000 4.000 10 C 0.021 3.979 11 H 0.084 0.916 12 C -0.240 4.240 13 O -0.369 6.369 14 C 0.052 3.948 15 H 0.133 0.867 16 C -0.216 4.216 17 C -0.013 4.013 18 O -0.372 6.372 19 N -0.155 5.155 20 N -0.104 5.104 21 C 0.142 3.858 22 C -0.570 4.570 23 H 0.082 0.918 24 C -0.139 4.139 25 N -0.532 5.532 26 Si 0.733 3.267 27 H -0.204 1.204 28 H -0.210 1.210 29 H -0.197 1.197 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.176 0.824 34 H 0.249 0.751 35 H 0.126 0.874 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.226 0.774 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.222 0.778 47 H 0.070 0.930 48 H 0.068 0.932 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.843 20.742 -1.089 24.961 hybrid contribution 0.548 0.182 2.187 2.262 sum 14.391 20.924 1.098 25.419 Atomic orbital electron populations 1.20306 0.88145 1.02636 1.02973 1.21021 0.94733 0.87300 1.01315 1.21225 0.89887 0.99641 1.21468 1.18715 0.86728 0.89255 1.01853 1.41457 1.07717 1.03419 1.75047 1.15525 0.84069 0.80740 0.77422 1.90825 1.23334 1.73628 1.57627 1.46968 1.04638 1.05259 1.78562 1.21584 0.84832 0.98634 0.94960 1.22402 0.88754 0.90628 0.96127 0.91635 1.22435 0.96914 1.02226 1.02448 1.86564 1.58050 1.58000 1.34247 1.21041 1.01283 0.78395 0.94091 0.86734 1.22060 1.01932 1.00682 0.96887 1.22600 0.81424 0.99051 0.98239 1.86510 1.17723 1.83144 1.49824 1.77266 0.99537 1.08514 1.30186 1.48920 1.01062 1.07567 1.52846 1.19623 0.95834 0.71605 0.98742 1.21350 1.46289 0.97893 0.91507 0.91788 1.24925 0.94826 0.96079 0.98042 1.69926 1.45209 1.06931 1.31106 0.86366 0.78608 0.77809 0.83951 1.20361 1.20952 1.19731 0.90616 0.90967 0.91018 0.82426 0.75134 0.87413 0.91220 0.91814 0.91429 0.92400 0.77404 0.92237 0.91695 0.91520 0.92526 0.93097 0.77751 0.92970 0.93153 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 10.11 36.01 0.36 -1.13 16 2 C 0.09 1.97 6.92 -82.28 -0.57 1.40 16 3 C -0.29 -6.48 9.52 -39.84 -0.38 -6.86 16 4 C 0.29 6.44 8.11 -154.36 -1.25 5.19 16 5 N -0.63 -11.37 4.43 -15.51 -0.07 -11.44 16 6 C 0.72 12.18 7.82 -86.92 -0.68 11.50 16 7 O -0.58 -11.35 12.80 5.28 0.07 -11.28 16 8 N -0.62 -7.45 2.39 -171.80 -0.41 -7.86 16 9 C 0.12 1.20 4.05 -4.04 -0.02 1.18 16 10 C 0.08 0.71 3.29 -26.73 -0.09 0.62 16 11 H 0.07 0.53 5.34 -51.93 -0.28 0.26 16 12 C -0.18 -1.25 9.54 37.16 0.35 -0.89 16 13 O -0.56 -6.55 10.51 -35.23 -0.37 -6.92 16 14 C 0.16 1.53 3.15 -67.94 -0.21 1.31 16 15 H 0.11 1.32 6.90 -51.93 -0.36 0.96 16 16 C -0.16 -1.29 9.02 37.16 0.34 -0.95 16 17 C 0.07 0.45 6.09 37.16 0.23 0.68 16 18 O -0.57 -3.02 8.64 -35.23 -0.30 -3.33 16 19 N -0.32 -8.02 12.59 31.44 0.40 -7.62 16 20 N -0.32 -8.05 3.59 -58.32 -0.21 -8.26 16 21 C 0.26 6.93 5.99 -5.19 -0.03 6.90 16 22 C -0.53 -15.12 9.39 -34.44 -0.32 -15.44 16 23 H 0.06 1.88 7.81 -52.48 -0.41 1.47 16 24 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 25 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 26 Si 0.91 21.57 29.54 -169.99 -5.02 16.55 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 30 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.30 7.07 -51.93 -0.37 0.94 16 33 H 0.16 3.45 5.91 -52.49 -0.31 3.14 16 34 H 0.41 6.80 5.39 -40.82 -0.22 6.58 16 35 H 0.11 0.88 5.46 -51.93 -0.28 0.59 16 36 H 0.07 0.73 6.71 -51.93 -0.35 0.39 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.38 3.28 9.08 45.56 0.41 3.70 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.53 6.22 -51.93 -0.32 0.20 16 44 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 46 H 0.38 0.64 9.12 45.56 0.42 1.05 16 47 H 0.05 1.37 7.04 -51.93 -0.37 1.01 16 48 H 0.05 1.43 8.14 -51.93 -0.42 1.00 16 49 H 0.27 7.21 8.31 -40.82 -0.34 6.88 16 LS Contribution 388.85 15.07 5.86 5.86 Total: -1.00 -35.24 388.85 -7.47 -42.71 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -5.77 Total: 11.34 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -2.37 Total: 5.19 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: 0.44 Total: -60.13 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.61 Total: -21.53 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.24 -7.47 -42.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615501378.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.745 kcal (2) G-P(sol) polarization free energy of solvation -35.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.60 seconds