Wall clock time and date at job start Sat Apr 11 2020 06:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35245 * 126.07076 * 2 1 4 4 C 1.40394 * 107.86460 * 180.14336 * 3 2 1 5 5 N 1.40197 * 125.97099 * 179.83212 * 4 3 2 6 6 C 1.34779 * 120.00092 * 359.71146 * 5 4 3 7 7 O 1.21597 * 119.99474 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00586 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99641 * 359.97438 * 8 6 5 10 10 C 1.53005 * 109.47166 * 276.24843 * 9 8 6 11 11 H 1.08999 * 109.47203 * 305.30799 * 10 9 8 12 12 C 1.53005 * 109.47233 * 185.30644 * 10 9 8 13 13 O 1.42898 * 109.47164 * 65.30778 * 10 9 8 14 14 C 1.46492 * 120.00508 * 180.02562 * 8 6 5 15 15 H 1.09003 * 109.47178 * 3.24217 * 14 8 6 16 16 C 1.53001 * 109.47278 * 243.24098 * 14 8 6 17 17 C 1.52995 * 109.47548 * 123.24000 * 14 8 6 18 18 O 1.42907 * 109.47185 * 66.42773 * 17 14 8 19 19 N 1.31212 * 108.05990 * 359.56290 * 4 3 2 20 20 N 1.34964 * 126.06996 * 179.66195 * 2 1 3 21 21 C 1.46502 * 125.97887 * 359.97438 * 20 2 1 22 22 C 1.50702 * 109.47147 * 270.00244 * 21 20 2 23 23 H 1.08007 * 119.99398 * 359.97438 * 22 21 20 24 24 C 1.37874 * 120.00386 * 179.97438 * 22 21 20 25 25 N 1.31519 * 119.99685 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 120.00216 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47165 * 90.00623 * 26 24 22 28 28 H 1.48508 * 109.47230 * 209.99767 * 26 24 22 29 29 H 1.48498 * 109.47245 * 330.00339 * 26 24 22 30 30 H 1.09003 * 109.46859 * 270.33616 * 1 2 3 31 31 H 1.08996 * 109.47844 * 30.33793 * 1 2 3 32 32 H 1.09003 * 109.47674 * 150.34575 * 1 2 3 33 33 H 1.07999 * 126.06091 * 359.97020 * 3 2 1 34 34 H 0.96996 * 120.00113 * 179.71572 * 5 4 3 35 35 H 1.09001 * 109.47736 * 156.24819 * 9 8 6 36 36 H 1.09002 * 109.47499 * 36.24539 * 9 8 6 37 37 H 1.08999 * 109.46627 * 300.00161 * 12 10 9 38 38 H 1.08998 * 109.47187 * 60.00146 * 12 10 9 39 39 H 1.09000 * 109.47126 * 180.02562 * 12 10 9 40 40 H 0.96699 * 114.00390 * 180.02562 * 13 10 9 41 41 H 1.09003 * 109.46682 * 59.99685 * 16 14 8 42 42 H 1.09000 * 109.47243 * 179.97438 * 16 14 8 43 43 H 1.08994 * 109.47169 * 300.00312 * 16 14 8 44 44 H 1.08999 * 109.47601 * 186.42920 * 17 14 8 45 45 H 1.09005 * 109.47189 * 306.42973 * 17 14 8 46 46 H 0.96693 * 114.00226 * 180.02562 * 18 17 14 47 47 H 1.09003 * 109.47085 * 29.99642 * 21 20 2 48 48 H 1.08997 * 109.47470 * 149.99574 * 21 20 2 49 49 H 0.96999 * 120.00128 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6369 0.6545 -0.0033 5 7 4.7737 1.4751 -0.0078 6 6 4.6370 2.8159 -0.0150 7 8 3.5276 3.3138 -0.0172 8 7 5.7297 3.6048 -0.0198 9 6 7.0662 3.0049 -0.0165 10 6 7.4674 2.6611 1.4194 11 1 7.3845 3.5513 2.0429 12 6 8.9122 2.1577 1.4387 13 8 6.6016 1.6430 1.9252 14 6 5.5811 5.0621 -0.0271 15 1 4.5235 5.3198 0.0305 16 6 6.1745 5.6289 -1.3184 17 6 6.3167 5.6559 1.1758 18 8 7.7224 5.4476 1.0249 19 7 3.6336 -0.6576 0.0042 20 7 2.3016 -1.0909 0.0064 21 6 1.8501 -2.4846 0.0152 22 6 1.6957 -2.9537 1.4390 23 1 1.9127 -2.2810 2.2557 24 6 1.2775 -4.2414 1.6991 25 7 1.0128 -5.0603 0.7046 26 14 1.0869 -4.8231 3.4639 27 1 -0.2954 -4.5452 3.9301 28 1 1.3489 -6.2831 3.5350 29 1 2.0554 -4.1035 4.3296 30 1 -0.3633 0.0060 1.0277 31 1 -0.3635 0.8869 -0.5190 32 1 -0.3634 -0.8931 -0.5084 33 1 1.9719 2.1211 -0.0005 34 1 5.6586 1.0779 -0.0057 35 1 7.7829 3.7117 -0.4346 36 1 7.0582 2.0964 -0.6188 37 1 8.9951 1.2675 0.8152 38 1 9.5727 2.9343 1.0529 39 1 9.1979 1.9124 2.4616 40 1 6.7980 1.3750 2.8333 41 1 5.6503 5.2058 -2.1754 42 1 6.0635 6.7132 -1.3240 43 1 7.2320 5.3712 -1.3759 44 1 6.1122 6.7249 1.2354 45 1 5.9732 5.1689 2.0885 46 1 8.2526 5.7990 1.7531 47 1 0.8912 -2.5591 -0.4978 48 1 2.5845 -3.1077 -0.4951 49 1 0.7190 -5.9665 0.8875 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615501378.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:59 Heat of formation + Delta-G solvation = -68.480746 kcal Electronic energy + Delta-G solvation = -31206.808650 eV Core-core repulsion = 26977.336500 eV Total energy + Delta-G solvation = -4229.472150 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.31534 -41.32815 -38.93938 -37.95101 -36.31291 -35.96423 -35.25099 -33.29563 -32.66057 -32.52538 -31.28000 -28.51079 -27.81663 -27.52924 -27.10800 -25.09494 -23.52612 -22.53874 -21.41209 -21.14759 -20.15792 -19.24595 -18.76466 -18.26245 -18.08096 -17.56594 -17.17129 -16.89560 -16.51973 -16.08545 -15.89193 -15.52129 -15.39175 -15.06408 -14.90018 -14.66701 -14.42312 -14.26913 -13.79816 -13.69920 -13.65459 -13.53540 -13.42821 -13.18078 -13.09690 -13.01656 -12.86264 -12.78554 -12.64460 -12.36109 -12.21290 -12.05449 -11.96072 -11.78147 -11.48994 -11.27956 -11.02618 -10.87089 -10.72204 -10.70897 -9.77570 -9.48051 -8.97475 -8.30546 -6.48852 1.07276 1.19495 1.38125 1.38939 1.51000 1.71205 2.04239 2.35910 2.47781 2.90868 2.98043 3.40086 3.43328 3.83223 3.94805 4.04966 4.06541 4.17349 4.23435 4.31739 4.44841 4.47608 4.51713 4.62188 4.68262 4.73437 4.79116 4.83090 4.91504 4.94218 4.99774 5.04880 5.06208 5.09359 5.10768 5.20206 5.27196 5.36087 5.37799 5.55520 5.66639 5.83199 5.89087 6.05069 6.31640 6.62961 6.69958 6.89614 6.96670 7.18484 7.21945 7.49501 8.74813 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016333 B = 0.002838 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.909747 B = 9865.415055 C =10863.271937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.086 3.914 3 C -0.300 4.300 4 C 0.295 3.705 5 N -0.621 5.621 6 C 0.715 3.285 7 O -0.609 6.609 8 N -0.604 5.604 9 C 0.119 3.881 10 C 0.083 3.917 11 H 0.077 0.923 12 C -0.174 4.174 13 O -0.593 6.593 14 C 0.144 3.856 15 H 0.093 0.907 16 C -0.148 4.148 17 C 0.079 3.921 18 O -0.570 6.570 19 N -0.362 5.362 20 N -0.344 5.344 21 C 0.276 3.724 22 C -0.552 4.552 23 H 0.048 0.952 24 C 0.022 3.978 25 N -0.919 5.919 26 Si 0.973 3.027 27 H -0.264 1.264 28 H -0.273 1.273 29 H -0.276 1.276 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.164 0.836 34 H 0.417 0.583 35 H 0.131 0.869 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.388 0.612 41 H 0.041 0.959 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.038 0.962 46 H 0.396 0.604 47 H 0.052 0.948 48 H 0.022 0.978 49 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.589 23.748 1.285 28.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.044 4.044 3 C -0.331 4.331 4 C 0.040 3.960 5 N -0.273 5.273 6 C 0.416 3.584 7 O -0.488 6.488 8 N -0.340 5.340 9 C -0.003 4.003 10 C 0.024 3.976 11 H 0.095 0.905 12 C -0.232 4.232 13 O -0.401 6.401 14 C 0.042 3.958 15 H 0.112 0.888 16 C -0.206 4.206 17 C 0.000 4.000 18 O -0.379 6.379 19 N -0.193 5.193 20 N -0.127 5.127 21 C 0.157 3.843 22 C -0.590 4.590 23 H 0.066 0.934 24 C -0.179 4.179 25 N -0.557 5.557 26 Si 0.796 3.204 27 H -0.189 1.189 28 H -0.198 1.198 29 H -0.201 1.201 30 H 0.101 0.899 31 H 0.123 0.877 32 H 0.088 0.912 33 H 0.181 0.819 34 H 0.256 0.744 35 H 0.149 0.851 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.238 0.762 41 H 0.060 0.940 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.057 0.943 46 H 0.246 0.754 47 H 0.069 0.931 48 H 0.040 0.960 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.020 22.565 0.077 27.106 hybrid contribution 0.305 -0.234 1.780 1.822 sum 15.325 22.330 1.857 27.147 Atomic orbital electron populations 1.20449 0.85321 1.04127 1.03884 1.21718 0.96595 0.86454 0.99649 1.21375 0.89995 0.99762 1.21986 1.19035 0.88186 0.88988 0.99822 1.41503 1.06862 1.03742 1.75164 1.15780 0.84939 0.80371 0.77299 1.90784 1.24995 1.73962 1.59089 1.47077 1.04215 1.05898 1.76768 1.21833 0.83833 0.98706 0.95974 1.22465 0.89394 0.90516 0.95209 0.90541 1.22353 0.95695 1.02205 1.02914 1.86521 1.59362 1.58948 1.35278 1.21313 1.01039 0.76882 0.96612 0.88849 1.21990 1.01829 1.01747 0.95065 1.22336 0.82061 0.99854 0.95772 1.86441 1.16838 1.83520 1.51061 1.77186 0.99860 1.09829 1.32435 1.48750 1.01709 1.07403 1.54826 1.19219 0.94793 0.72481 0.97774 1.21436 1.47399 0.98414 0.91732 0.93387 1.25746 0.93942 0.95814 1.02377 1.70009 1.45150 1.07406 1.33169 0.85338 0.78974 0.77542 0.78509 1.18879 1.19811 1.20112 0.89861 0.87676 0.91247 0.81906 0.74373 0.85141 0.92299 0.92985 0.89611 0.91535 0.76212 0.94002 0.89621 0.90713 0.90160 0.94344 0.75412 0.93050 0.95953 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.86 10.11 71.24 0.72 -2.14 16 2 C 0.09 3.93 6.92 41.39 0.29 4.22 16 3 C -0.30 -13.59 9.52 22.10 0.21 -13.38 16 4 C 0.30 13.54 8.11 133.31 1.08 14.62 16 5 N -0.62 -23.08 4.43 -321.23 -1.42 -24.50 16 6 C 0.71 24.41 7.82 179.05 1.40 25.81 16 7 O -0.61 -24.35 12.80 -4.02 -0.05 -24.41 16 8 N -0.60 -14.21 2.39 -815.72 -1.95 -16.15 16 9 C 0.12 2.16 4.05 86.38 0.35 2.51 16 10 C 0.08 1.33 3.29 30.60 0.10 1.43 16 11 H 0.08 1.07 5.34 -2.39 -0.01 1.05 16 12 C -0.17 -2.01 9.54 71.98 0.69 -1.32 16 13 O -0.59 -13.63 10.51 -148.98 -1.57 -15.20 16 14 C 0.14 2.65 3.15 44.99 0.14 2.79 16 15 H 0.09 2.14 6.90 -2.39 -0.02 2.12 16 16 C -0.15 -2.14 9.02 71.98 0.65 -1.49 16 17 C 0.08 0.89 6.09 71.98 0.44 1.32 16 18 O -0.57 -4.08 8.64 -148.98 -1.29 -5.36 16 19 N -0.36 -18.59 12.59 -54.44 -0.69 -19.27 16 20 N -0.34 -17.83 3.59 -338.44 -1.22 -19.04 16 21 C 0.28 15.32 5.99 85.63 0.51 15.83 16 22 C -0.55 -32.09 9.39 25.60 0.24 -31.85 16 23 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 24 C 0.02 1.23 5.46 84.65 0.46 1.70 16 25 N -0.92 -53.15 13.29 21.45 0.28 -52.87 16 26 Si 0.97 44.10 29.54 68.60 2.03 46.13 16 27 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 28 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 29 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 30 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 32 H 0.07 2.51 7.07 -2.39 -0.02 2.50 16 33 H 0.16 7.21 5.91 -2.91 -0.02 7.19 16 34 H 0.42 14.16 5.39 -92.71 -0.50 13.66 16 35 H 0.13 1.78 5.46 -2.39 -0.01 1.77 16 36 H 0.06 1.21 6.71 -2.39 -0.02 1.20 16 37 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.39 6.65 9.08 -74.06 -0.67 5.97 16 41 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.07 0.97 6.22 -2.39 -0.01 0.95 16 44 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.04 0.54 7.66 -2.38 -0.02 0.53 16 46 H 0.40 -0.25 9.12 -74.06 -0.68 -0.93 16 47 H 0.05 2.81 7.04 -2.39 -0.02 2.79 16 48 H 0.02 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -77.89 388.85 0.58 -77.31 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: -0.84 Total: 33.35 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 7.28 Total: 20.02 kcal Atomic # 7 Polarization: -126.85 SS G_CDS: -4.98 Total: -131.84 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -2.90 Total: -44.97 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -77.89 0.58 -77.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615501378.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.829 kcal (2) G-P(sol) polarization free energy of solvation -77.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds