Wall clock time and date at job start Sat Apr 11 2020 06:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35250 * 126.06734 * 2 1 4 4 C 1.40403 * 107.86307 * 179.91036 * 3 2 1 5 5 N 1.40195 * 125.97074 * 180.14784 * 4 3 2 6 6 C 1.34767 * 120.00259 * 0.23247 * 5 4 3 7 7 O 1.21599 * 119.99929 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00470 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99459 * 359.97438 * 8 6 5 10 10 C 1.52997 * 109.47187 * 85.92295 * 9 8 6 11 11 H 1.09000 * 109.47347 * 53.92266 * 10 9 8 12 12 C 1.52999 * 109.47023 * 173.92600 * 10 9 8 13 13 O 1.42905 * 109.46785 * 293.91914 * 10 9 8 14 14 C 1.46496 * 120.00167 * 179.97438 * 8 6 5 15 15 H 1.08995 * 109.47630 * 354.32981 * 14 8 6 16 16 C 1.53008 * 109.46706 * 114.32645 * 14 8 6 17 17 C 1.53001 * 109.47394 * 234.32194 * 14 8 6 18 18 O 1.42900 * 109.47339 * 293.31416 * 17 14 8 19 19 N 1.31210 * 108.05716 * 0.36325 * 4 3 2 20 20 N 1.34955 * 126.07110 * 180.32211 * 2 1 3 21 21 C 1.46500 * 125.97577 * 359.93168 * 20 2 1 22 22 C 1.50706 * 109.46966 * 90.00683 * 21 20 2 23 23 H 1.08005 * 119.99785 * 359.97438 * 22 21 20 24 24 C 1.37873 * 119.99788 * 180.02562 * 22 21 20 25 25 N 1.31520 * 119.99786 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00489 * 359.97438 * 24 22 21 27 27 H 1.48490 * 109.47265 * 89.99819 * 26 24 22 28 28 H 1.48498 * 109.47190 * 210.00540 * 26 24 22 29 29 H 1.48501 * 109.46566 * 329.99776 * 26 24 22 30 30 H 1.09001 * 109.46829 * 269.68823 * 1 2 3 31 31 H 1.08993 * 109.47718 * 149.68787 * 1 2 3 32 32 H 1.09004 * 109.47569 * 29.67629 * 1 2 3 33 33 H 1.07995 * 126.06866 * 0.02562 * 3 2 1 34 34 H 0.97005 * 120.00049 * 180.23241 * 5 4 3 35 35 H 1.09001 * 109.46801 * 205.92076 * 9 8 6 36 36 H 1.09004 * 109.47028 * 325.91536 * 9 8 6 37 37 H 1.09000 * 109.47332 * 59.99657 * 12 10 9 38 38 H 1.08997 * 109.47342 * 179.97438 * 12 10 9 39 39 H 1.08998 * 109.47508 * 299.99500 * 12 10 9 40 40 H 0.96700 * 114.00436 * 300.00571 * 13 10 9 41 41 H 1.09002 * 109.47119 * 299.99928 * 16 14 8 42 42 H 1.08996 * 109.47189 * 60.00199 * 16 14 8 43 43 H 1.09005 * 109.47163 * 180.02562 * 16 14 8 44 44 H 1.08997 * 109.46499 * 53.31443 * 17 14 8 45 45 H 1.08995 * 109.46834 * 173.30882 * 17 14 8 46 46 H 0.96692 * 113.99717 * 179.97438 * 18 17 14 47 47 H 1.09006 * 109.47361 * 210.00211 * 21 20 2 48 48 H 1.08998 * 109.47386 * 330.00861 * 21 20 2 49 49 H 0.96997 * 120.00042 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0933 0.0000 4 6 3.6370 0.6546 0.0021 5 7 4.7737 1.4752 0.0057 6 6 4.6370 2.8159 0.0122 7 8 3.5276 3.3139 0.0145 8 7 5.7297 3.6048 0.0152 9 6 7.0662 3.0048 0.0119 10 6 7.4888 2.7087 -1.4285 11 1 7.4020 3.6159 -2.0264 12 6 8.9399 2.2240 -1.4448 13 8 6.6420 1.6954 -1.9745 14 6 5.5810 5.0622 0.0217 15 1 4.5268 5.3204 -0.0782 16 6 6.1211 5.6240 1.3384 17 6 6.3656 5.6602 -1.1478 18 8 7.7642 5.4563 -0.9370 19 7 3.6336 -0.6574 -0.0046 20 7 2.3016 -1.0908 -0.0061 21 6 1.8500 -2.4845 -0.0126 22 6 1.6940 -2.9554 -1.4356 23 1 1.9092 -2.2835 -2.2534 24 6 1.2754 -4.2435 -1.6935 25 7 1.1387 -4.6543 -2.9354 26 14 0.9024 -5.4053 -0.2791 27 1 -0.5281 -5.2812 0.0994 28 1 1.1843 -6.8018 -0.6980 29 1 1.7548 -5.0564 0.8858 30 1 -0.3633 -0.0056 1.0277 31 1 -0.3634 -0.8871 -0.5186 32 1 -0.3634 0.8929 -0.5088 33 1 1.9719 2.1211 0.0004 34 1 5.6587 1.0780 0.0035 35 1 7.7764 3.6973 0.4638 36 1 7.0494 2.0770 0.5837 37 1 9.0267 1.3168 -0.8469 38 1 9.2408 2.0126 -2.4709 39 1 9.5859 2.9968 -1.0284 40 1 6.6686 0.8581 -1.4914 41 1 5.5622 5.1980 2.1716 42 1 7.1754 5.3659 1.4383 43 1 6.0101 6.7084 1.3435 44 1 6.0631 5.1734 -2.0749 45 1 6.1602 6.7285 -1.2147 46 1 8.3238 5.8106 -1.6415 47 1 2.5851 -3.1070 0.4976 48 1 0.8918 -2.5583 0.5017 49 1 0.8447 -5.5606 -3.1168 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615501379.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:15 Heat of formation + Delta-G solvation = -34.780210 kcal Electronic energy + Delta-G solvation = -31246.314154 eV Core-core repulsion = 27018.303369 eV Total energy + Delta-G solvation = -4228.010785 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 9.73 seconds Orbital eigenvalues (eV) -41.00931 -40.11732 -38.07144 -37.38186 -35.34917 -34.66435 -33.28989 -32.17925 -31.47638 -31.08432 -30.41458 -27.08541 -26.85873 -26.40052 -26.30954 -23.14569 -22.20331 -21.95909 -20.23024 -19.74305 -19.19777 -18.14747 -17.50757 -17.06803 -16.96915 -16.29625 -15.80089 -15.56622 -15.37196 -14.99499 -14.60190 -14.57003 -14.31854 -14.10047 -13.98486 -13.64244 -13.16423 -13.04854 -12.74548 -12.56367 -12.51167 -12.39494 -12.31897 -12.22588 -11.96636 -11.95048 -11.66149 -11.45319 -11.32674 -11.12427 -10.92282 -10.77421 -10.54430 -10.43668 -10.40128 -9.94707 -9.89604 -9.60383 -9.51550 -8.75167 -8.73842 -7.89190 -7.34295 -6.22627 -4.25421 2.33591 2.65035 3.12980 3.16634 3.24051 3.25810 3.39755 3.82871 3.91507 4.08615 4.19572 4.24620 4.52262 4.61319 4.74147 4.81809 4.94453 5.01583 5.05548 5.14626 5.17902 5.26934 5.38908 5.42058 5.48475 5.61108 5.69046 5.73768 5.79455 5.93662 5.94300 6.00282 6.08643 6.18540 6.37214 6.43595 6.54736 6.59942 6.68146 6.88823 7.02850 7.18454 7.33356 7.48778 7.54919 7.91211 7.94503 8.36271 8.65002 8.68069 8.84304 9.32774 10.89939 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018049 B = 0.002795 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.973240 B =10014.740975 C =10942.940323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.093 3.907 3 C -0.284 4.284 4 C 0.289 3.711 5 N -0.634 5.634 6 C 0.722 3.278 7 O -0.570 6.570 8 N -0.614 5.614 9 C 0.083 3.917 10 C 0.081 3.919 11 H 0.110 0.890 12 C -0.182 4.182 13 O -0.556 6.556 14 C 0.157 3.843 15 H 0.115 0.885 16 C -0.157 4.157 17 C 0.064 3.936 18 O -0.567 6.567 19 N -0.323 5.323 20 N -0.319 5.319 21 C 0.233 3.767 22 C -0.539 4.539 23 H 0.081 0.919 24 C 0.078 3.922 25 N -0.887 5.887 26 Si 0.872 3.128 27 H -0.271 1.271 28 H -0.280 1.280 29 H -0.263 1.263 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.161 0.839 34 H 0.399 0.601 35 H 0.106 0.894 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.370 0.630 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.058 0.942 46 H 0.377 0.623 47 H 0.049 0.951 48 H 0.045 0.955 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.943 20.631 7.009 25.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.037 4.037 3 C -0.316 4.316 4 C 0.035 3.965 5 N -0.286 5.286 6 C 0.423 3.577 7 O -0.446 6.446 8 N -0.351 5.351 9 C -0.041 4.041 10 C 0.021 3.979 11 H 0.127 0.873 12 C -0.240 4.240 13 O -0.361 6.361 14 C 0.053 3.947 15 H 0.133 0.867 16 C -0.215 4.215 17 C -0.015 4.015 18 O -0.373 6.373 19 N -0.153 5.153 20 N -0.101 5.101 21 C 0.114 3.886 22 C -0.578 4.578 23 H 0.099 0.901 24 C -0.126 4.126 25 N -0.524 5.524 26 Si 0.698 3.302 27 H -0.196 1.196 28 H -0.206 1.206 29 H -0.188 1.188 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.179 0.821 34 H 0.236 0.764 35 H 0.124 0.876 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.218 0.782 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.224 0.776 47 H 0.067 0.933 48 H 0.062 0.938 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.411 19.851 7.011 24.962 hybrid contribution 0.360 -0.490 0.336 0.695 sum 13.771 19.362 7.347 24.870 Atomic orbital electron populations 1.20390 0.87971 1.04114 1.02347 1.21031 0.94831 0.87004 1.00865 1.21248 0.89734 0.99803 1.20767 1.18679 0.86749 0.89194 1.01884 1.41535 1.07130 1.03735 1.76234 1.15513 0.84294 0.80490 0.77368 1.90842 1.23308 1.73336 1.57085 1.46954 1.04427 1.05454 1.78268 1.22329 0.85114 0.99147 0.97492 1.22583 0.88914 0.92051 0.94379 0.87264 1.22432 0.96837 1.01850 1.02895 1.86769 1.67080 1.24556 1.57733 1.21059 1.01150 0.78082 0.94406 0.86713 1.22054 1.02097 1.00735 0.96624 1.22606 0.81516 0.99218 0.98162 1.86499 1.17060 1.83091 1.50667 1.77217 0.99400 1.08414 1.30316 1.48443 1.01197 1.06872 1.53605 1.19957 0.95193 0.73895 0.99599 1.21209 1.47115 0.98994 0.90448 0.90060 1.24813 0.94553 0.97465 0.95731 1.69880 1.45784 1.18290 1.18471 0.86908 0.79420 0.80988 0.82860 1.19644 1.20568 1.18806 0.91186 0.89924 0.90420 0.82142 0.76359 0.87594 0.91579 0.92370 0.91665 0.91232 0.78211 0.92318 0.91515 0.91653 0.92764 0.92370 0.77573 0.93318 0.93765 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.55 9.89 36.00 0.36 -1.19 16 2 C 0.09 1.99 6.92 -82.29 -0.57 1.42 16 3 C -0.28 -6.02 9.52 -39.83 -0.38 -6.40 16 4 C 0.29 6.01 8.11 -154.36 -1.25 4.76 16 5 N -0.63 -10.41 4.51 -15.51 -0.07 -10.48 16 6 C 0.72 11.47 7.85 -86.92 -0.68 10.78 16 7 O -0.57 -10.74 12.81 5.28 0.07 -10.67 16 8 N -0.61 -7.00 2.38 -171.80 -0.41 -7.41 16 9 C 0.08 0.73 4.05 -4.04 -0.02 0.71 16 10 C 0.08 0.72 3.24 -26.73 -0.09 0.64 16 11 H 0.11 0.99 5.10 -51.93 -0.26 0.73 16 12 C -0.18 -1.26 9.53 37.16 0.35 -0.90 16 13 O -0.56 -7.02 11.78 -35.23 -0.41 -7.43 16 14 C 0.16 1.49 3.15 -67.93 -0.21 1.27 16 15 H 0.12 1.28 6.92 -51.93 -0.36 0.92 16 16 C -0.16 -1.24 9.05 37.16 0.34 -0.90 16 17 C 0.06 0.43 6.04 37.16 0.22 0.66 16 18 O -0.57 -2.97 8.60 -35.23 -0.30 -3.28 16 19 N -0.32 -7.43 12.59 31.44 0.40 -7.03 16 20 N -0.32 -7.53 3.59 -58.32 -0.21 -7.74 16 21 C 0.23 5.67 4.88 -5.19 -0.03 5.65 16 22 C -0.54 -15.28 9.94 -34.44 -0.34 -15.62 16 23 H 0.08 2.62 8.06 -52.48 -0.42 2.19 16 24 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 25 N -0.89 -26.60 13.96 55.43 0.77 -25.83 16 26 Si 0.87 20.29 27.47 -169.99 -4.67 15.62 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 29 H -0.26 -5.87 6.54 56.52 0.37 -5.50 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.08 1.52 7.71 -51.93 -0.40 1.12 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.16 3.36 5.91 -52.49 -0.31 3.05 16 34 H 0.40 5.43 4.58 -40.82 -0.19 5.24 16 35 H 0.11 0.80 5.53 -51.93 -0.29 0.51 16 36 H 0.07 0.56 6.59 -51.93 -0.34 0.22 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.37 4.12 7.35 45.56 0.33 4.46 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.51 6.31 -51.93 -0.33 0.18 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.05 0.45 7.44 -51.93 -0.39 0.06 16 45 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.38 0.64 9.12 45.56 0.42 1.06 16 47 H 0.05 1.19 7.20 -51.93 -0.37 0.82 16 48 H 0.04 0.99 7.07 -51.93 -0.37 0.63 16 49 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 384.42 15.07 5.79 5.79 Total: -1.00 -35.87 384.42 -7.27 -43.14 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -5.83 Total: 12.34 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -2.39 Total: 2.98 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 0.48 Total: -58.49 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.65 Total: -21.38 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.67 Total: 15.62 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.87 -7.27 -43.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615501379.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.355 kcal (2) G-P(sol) polarization free energy of solvation -35.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.73 seconds