Wall clock time and date at job start Sat Apr 11 2020 06:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35250 * 126.06734 * 2 1 4 4 C 1.40403 * 107.86307 * 179.91036 * 3 2 1 5 5 N 1.40195 * 125.97074 * 180.14784 * 4 3 2 6 6 C 1.34767 * 120.00259 * 0.23247 * 5 4 3 7 7 O 1.21599 * 119.99929 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00470 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99459 * 359.97438 * 8 6 5 10 10 C 1.52997 * 109.47187 * 85.92295 * 9 8 6 11 11 H 1.09000 * 109.47347 * 53.92266 * 10 9 8 12 12 C 1.52999 * 109.47023 * 173.92600 * 10 9 8 13 13 O 1.42905 * 109.46785 * 293.91914 * 10 9 8 14 14 C 1.46496 * 120.00167 * 179.97438 * 8 6 5 15 15 H 1.08995 * 109.47630 * 354.32981 * 14 8 6 16 16 C 1.53008 * 109.46706 * 114.32645 * 14 8 6 17 17 C 1.53001 * 109.47394 * 234.32194 * 14 8 6 18 18 O 1.42900 * 109.47339 * 293.31416 * 17 14 8 19 19 N 1.31210 * 108.05716 * 0.36325 * 4 3 2 20 20 N 1.34955 * 126.07110 * 180.32211 * 2 1 3 21 21 C 1.46500 * 125.97577 * 359.93168 * 20 2 1 22 22 C 1.50706 * 109.46966 * 90.00683 * 21 20 2 23 23 H 1.08005 * 119.99785 * 359.97438 * 22 21 20 24 24 C 1.37873 * 119.99788 * 180.02562 * 22 21 20 25 25 N 1.31520 * 119.99786 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00489 * 359.97438 * 24 22 21 27 27 H 1.48490 * 109.47265 * 89.99819 * 26 24 22 28 28 H 1.48498 * 109.47190 * 210.00540 * 26 24 22 29 29 H 1.48501 * 109.46566 * 329.99776 * 26 24 22 30 30 H 1.09001 * 109.46829 * 269.68823 * 1 2 3 31 31 H 1.08993 * 109.47718 * 149.68787 * 1 2 3 32 32 H 1.09004 * 109.47569 * 29.67629 * 1 2 3 33 33 H 1.07995 * 126.06866 * 0.02562 * 3 2 1 34 34 H 0.97005 * 120.00049 * 180.23241 * 5 4 3 35 35 H 1.09001 * 109.46801 * 205.92076 * 9 8 6 36 36 H 1.09004 * 109.47028 * 325.91536 * 9 8 6 37 37 H 1.09000 * 109.47332 * 59.99657 * 12 10 9 38 38 H 1.08997 * 109.47342 * 179.97438 * 12 10 9 39 39 H 1.08998 * 109.47508 * 299.99500 * 12 10 9 40 40 H 0.96700 * 114.00436 * 300.00571 * 13 10 9 41 41 H 1.09002 * 109.47119 * 299.99928 * 16 14 8 42 42 H 1.08996 * 109.47189 * 60.00199 * 16 14 8 43 43 H 1.09005 * 109.47163 * 180.02562 * 16 14 8 44 44 H 1.08997 * 109.46499 * 53.31443 * 17 14 8 45 45 H 1.08995 * 109.46834 * 173.30882 * 17 14 8 46 46 H 0.96692 * 113.99717 * 179.97438 * 18 17 14 47 47 H 1.09006 * 109.47361 * 210.00211 * 21 20 2 48 48 H 1.08998 * 109.47386 * 330.00861 * 21 20 2 49 49 H 0.96997 * 120.00042 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0933 0.0000 4 6 3.6370 0.6546 0.0021 5 7 4.7737 1.4752 0.0057 6 6 4.6370 2.8159 0.0122 7 8 3.5276 3.3139 0.0145 8 7 5.7297 3.6048 0.0152 9 6 7.0662 3.0048 0.0119 10 6 7.4888 2.7087 -1.4285 11 1 7.4020 3.6159 -2.0264 12 6 8.9399 2.2240 -1.4448 13 8 6.6420 1.6954 -1.9745 14 6 5.5810 5.0622 0.0217 15 1 4.5268 5.3204 -0.0782 16 6 6.1211 5.6240 1.3384 17 6 6.3656 5.6602 -1.1478 18 8 7.7642 5.4563 -0.9370 19 7 3.6336 -0.6574 -0.0046 20 7 2.3016 -1.0908 -0.0061 21 6 1.8500 -2.4845 -0.0126 22 6 1.6940 -2.9554 -1.4356 23 1 1.9092 -2.2835 -2.2534 24 6 1.2754 -4.2435 -1.6935 25 7 1.1387 -4.6543 -2.9354 26 14 0.9024 -5.4053 -0.2791 27 1 -0.5281 -5.2812 0.0994 28 1 1.1843 -6.8018 -0.6980 29 1 1.7548 -5.0564 0.8858 30 1 -0.3633 -0.0056 1.0277 31 1 -0.3634 -0.8871 -0.5186 32 1 -0.3634 0.8929 -0.5088 33 1 1.9719 2.1211 0.0004 34 1 5.6587 1.0780 0.0035 35 1 7.7764 3.6973 0.4638 36 1 7.0494 2.0770 0.5837 37 1 9.0267 1.3168 -0.8469 38 1 9.2408 2.0126 -2.4709 39 1 9.5859 2.9968 -1.0284 40 1 6.6686 0.8581 -1.4914 41 1 5.5622 5.1980 2.1716 42 1 7.1754 5.3659 1.4383 43 1 6.0101 6.7084 1.3435 44 1 6.0631 5.1734 -2.0749 45 1 6.1602 6.7285 -1.2147 46 1 8.3238 5.8106 -1.6415 47 1 2.5851 -3.1070 0.4976 48 1 0.8918 -2.5583 0.5017 49 1 0.8447 -5.5606 -3.1168 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615501379.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:12 Heat of formation + Delta-G solvation = -62.919821 kcal Electronic energy + Delta-G solvation = -31247.534379 eV Core-core repulsion = 27018.303369 eV Total energy + Delta-G solvation = -4229.231010 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 2.88 seconds Orbital eigenvalues (eV) -42.41232 -41.43657 -39.03794 -38.12501 -36.38510 -35.92859 -35.21055 -33.39676 -32.78288 -32.66502 -31.38055 -28.91302 -27.86061 -27.51036 -27.15869 -24.77979 -23.52970 -22.87228 -21.47546 -21.22479 -20.31509 -19.27919 -19.21143 -18.25791 -17.86599 -17.56284 -17.18067 -16.78596 -16.42321 -16.24899 -16.14312 -15.60100 -15.48878 -15.05966 -14.95232 -14.86503 -14.69287 -14.45332 -13.91407 -13.73425 -13.70776 -13.63953 -13.40208 -13.24645 -13.15735 -13.02225 -12.80147 -12.66413 -12.54041 -12.40251 -12.20948 -12.04097 -11.82734 -11.63492 -11.54706 -11.40352 -11.28237 -11.07265 -10.88004 -10.81696 -9.75297 -9.51535 -8.98336 -8.38901 -6.50082 1.00062 1.09583 1.36027 1.38975 1.49080 1.66836 1.98200 2.28122 2.40105 2.80008 2.93362 3.39939 3.40193 3.80064 3.84183 3.91949 4.01447 4.10665 4.15933 4.27423 4.41212 4.45929 4.50243 4.56356 4.57958 4.66304 4.74792 4.76656 4.79044 4.84445 4.91611 4.97039 5.01441 5.05517 5.14218 5.16559 5.21731 5.25146 5.32567 5.36311 5.60544 5.81288 5.91668 6.03483 6.40064 6.53524 6.58849 6.67820 6.93704 7.07286 7.13955 7.40505 8.77961 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018049 B = 0.002795 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.973240 B =10014.740975 C =10942.940323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.090 3.910 3 C -0.299 4.299 4 C 0.295 3.705 5 N -0.626 5.626 6 C 0.714 3.286 7 O -0.604 6.604 8 N -0.602 5.602 9 C 0.083 3.917 10 C 0.080 3.920 11 H 0.110 0.890 12 C -0.174 4.174 13 O -0.585 6.585 14 C 0.146 3.854 15 H 0.093 0.907 16 C -0.147 4.147 17 C 0.076 3.924 18 O -0.569 6.569 19 N -0.355 5.355 20 N -0.343 5.343 21 C 0.243 3.757 22 C -0.550 4.550 23 H 0.022 0.978 24 C 0.021 3.979 25 N -0.939 5.939 26 Si 0.952 3.048 27 H -0.250 1.250 28 H -0.278 1.278 29 H -0.244 1.244 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.163 0.837 34 H 0.411 0.589 35 H 0.128 0.872 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.090 0.910 40 H 0.372 0.628 41 H 0.042 0.958 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.037 0.963 45 H 0.081 0.919 46 H 0.396 0.604 47 H 0.050 0.950 48 H 0.072 0.928 49 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.017 21.582 9.170 27.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.040 4.040 3 C -0.330 4.330 4 C 0.040 3.960 5 N -0.280 5.280 6 C 0.415 3.585 7 O -0.483 6.483 8 N -0.338 5.338 9 C -0.040 4.040 10 C 0.021 3.979 11 H 0.128 0.872 12 C -0.232 4.232 13 O -0.392 6.392 14 C 0.043 3.957 15 H 0.111 0.889 16 C -0.205 4.205 17 C -0.003 4.003 18 O -0.378 6.378 19 N -0.186 5.186 20 N -0.126 5.126 21 C 0.123 3.877 22 C -0.588 4.588 23 H 0.040 0.960 24 C -0.179 4.179 25 N -0.577 5.577 26 Si 0.773 3.227 27 H -0.174 1.174 28 H -0.204 1.204 29 H -0.167 1.167 30 H 0.120 0.880 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.180 0.820 34 H 0.251 0.749 35 H 0.146 0.854 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.109 0.891 40 H 0.221 0.779 41 H 0.061 0.939 42 H 0.093 0.907 43 H 0.102 0.898 44 H 0.055 0.945 45 H 0.099 0.901 46 H 0.246 0.754 47 H 0.068 0.932 48 H 0.090 0.910 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.560 20.866 9.169 27.046 hybrid contribution 0.140 -0.591 -0.449 0.756 sum 14.700 20.275 8.720 26.518 Atomic orbital electron populations 1.20531 0.85224 1.04339 1.04456 1.21716 0.96664 0.86351 0.99241 1.21403 0.90152 0.99890 1.21560 1.18978 0.88109 0.89001 0.99928 1.41534 1.06586 1.03804 1.76098 1.15794 0.85040 0.80329 0.77302 1.90803 1.25038 1.73793 1.58657 1.47078 1.04187 1.05981 1.76535 1.22524 0.83934 0.99806 0.97741 1.22716 0.89756 0.91320 0.94110 0.87218 1.22353 0.95368 1.02678 1.02797 1.86747 1.68364 1.25369 1.58683 1.21302 1.00853 0.76865 0.96712 0.88887 1.21973 1.02014 1.01695 0.94777 1.22350 0.82164 0.99974 0.95779 1.86428 1.16216 1.83462 1.51709 1.77135 0.99692 1.09491 1.32241 1.48389 1.01800 1.06962 1.55424 1.19757 0.96395 0.74632 0.96924 1.21267 1.47630 0.98724 0.91188 0.95981 1.25851 0.93730 0.99263 0.99031 1.70045 1.46993 1.19195 1.21471 0.85661 0.80498 0.77602 0.78963 1.17438 1.20373 1.16718 0.87974 0.91303 0.88520 0.81973 0.74911 0.85396 0.91154 0.91992 0.92304 0.89072 0.77936 0.93912 0.90681 0.89758 0.94492 0.90066 0.75354 0.93197 0.91035 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.93 9.89 71.23 0.70 -2.22 16 2 C 0.09 3.87 6.92 41.39 0.29 4.15 16 3 C -0.30 -12.90 9.52 22.11 0.21 -12.69 16 4 C 0.30 12.57 8.11 133.31 1.08 13.65 16 5 N -0.63 -20.90 4.51 -321.23 -1.45 -22.35 16 6 C 0.71 22.94 7.85 179.06 1.41 24.35 16 7 O -0.60 -23.36 12.81 -4.03 -0.05 -23.41 16 8 N -0.60 -13.35 2.38 -815.70 -1.94 -15.29 16 9 C 0.08 1.32 4.05 86.38 0.35 1.67 16 10 C 0.08 1.34 3.24 30.59 0.10 1.44 16 11 H 0.11 1.83 5.10 -2.39 -0.01 1.82 16 12 C -0.17 -2.05 9.53 71.98 0.69 -1.36 16 13 O -0.58 -14.87 11.78 -148.98 -1.75 -16.62 16 14 C 0.15 2.61 3.15 45.00 0.14 2.75 16 15 H 0.09 2.10 6.92 -2.39 -0.02 2.08 16 16 C -0.15 -2.03 9.05 71.98 0.65 -1.38 16 17 C 0.08 0.90 6.04 71.98 0.43 1.33 16 18 O -0.57 -4.23 8.60 -148.98 -1.28 -5.51 16 19 N -0.36 -16.74 12.59 -54.43 -0.69 -17.43 16 20 N -0.34 -16.46 3.59 -338.44 -1.22 -17.67 16 21 C 0.24 11.81 4.88 85.64 0.42 12.23 16 22 C -0.55 -32.19 9.94 25.60 0.25 -31.93 16 23 H 0.02 1.50 8.06 -2.91 -0.02 1.48 16 24 C 0.02 1.18 5.47 84.65 0.46 1.65 16 25 N -0.94 -57.93 13.96 21.45 0.30 -57.63 16 26 Si 0.95 41.29 27.47 68.60 1.88 43.17 16 27 H -0.25 -10.02 7.11 99.48 0.71 -9.32 16 28 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 29 H -0.24 -9.75 6.54 99.48 0.65 -9.10 16 30 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 31 H 0.07 2.50 7.71 -2.39 -0.02 2.48 16 32 H 0.10 2.83 8.14 -2.38 -0.02 2.81 16 33 H 0.16 6.92 5.91 -2.91 -0.02 6.91 16 34 H 0.41 11.30 4.58 -92.70 -0.42 10.88 16 35 H 0.13 1.54 5.53 -2.39 -0.01 1.53 16 36 H 0.07 1.09 6.59 -2.39 -0.02 1.07 16 37 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.37 8.50 7.35 -74.06 -0.54 7.96 16 41 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.07 0.93 6.31 -2.39 -0.02 0.91 16 43 H 0.08 0.86 8.14 -2.38 -0.02 0.85 16 44 H 0.04 0.57 7.44 -2.39 -0.02 0.56 16 45 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.40 0.00 9.12 -74.06 -0.68 -0.67 16 47 H 0.05 2.40 7.20 -2.38 -0.02 2.38 16 48 H 0.07 3.08 7.07 -2.39 -0.02 3.06 16 49 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -82.04 384.42 0.30 -81.75 By element: Atomic # 1 Polarization: 38.05 SS G_CDS: -0.69 Total: 37.36 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 7.19 Total: 13.64 kcal Atomic # 7 Polarization: -125.37 SS G_CDS: -5.00 Total: -130.37 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -3.09 Total: -45.54 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 1.88 Total: 43.17 kcal Total: -82.04 0.30 -81.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615501379.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.827 kcal (2) G-P(sol) polarization free energy of solvation -82.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.89 seconds