Wall clock time and date at job start Sat Apr 11 2020 06:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35242 * 126.06844 * 2 1 4 4 C 1.40408 * 107.86406 * 179.88056 * 3 2 1 5 5 N 1.40191 * 125.97227 * 180.15344 * 4 3 2 6 6 C 1.34776 * 120.00070 * 0.24698 * 5 4 3 7 7 O 1.21591 * 119.99990 * 354.68296 * 6 5 4 8 8 N 1.34780 * 120.00131 * 174.68337 * 6 5 4 9 9 C 1.46498 * 119.99831 * 5.01345 * 8 6 5 10 10 C 1.53002 * 109.47322 * 89.99908 * 9 8 6 11 11 H 1.09002 * 109.46924 * 59.99586 * 10 9 8 12 12 C 1.52999 * 109.47227 * 179.97438 * 10 9 8 13 13 O 1.42903 * 109.46977 * 300.00057 * 10 9 8 14 14 C 1.46503 * 120.00185 * 185.00924 * 8 6 5 15 15 H 1.09004 * 109.46965 * 4.74011 * 14 8 6 16 16 C 1.52996 * 109.47303 * 244.74019 * 14 8 6 17 17 C 1.53000 * 109.47108 * 124.73792 * 14 8 6 18 18 O 1.42898 * 109.47123 * 295.00439 * 17 14 8 19 19 N 1.31206 * 108.05328 * 0.38532 * 4 3 2 20 20 N 1.34961 * 126.06969 * 180.30512 * 2 1 3 21 21 C 1.46496 * 125.97711 * 359.96376 * 20 2 1 22 22 C 1.50699 * 109.47465 * 89.99608 * 21 20 2 23 23 H 1.07997 * 120.00099 * 0.02562 * 22 21 20 24 24 C 1.37883 * 120.00255 * 179.97438 * 22 21 20 25 25 N 1.31509 * 120.00039 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99751 * 0.02562 * 24 22 21 27 27 H 1.48502 * 109.46757 * 90.00186 * 26 24 22 28 28 H 1.48498 * 109.46826 * 210.00058 * 26 24 22 29 29 H 1.48497 * 109.47260 * 329.99867 * 26 24 22 30 30 H 1.08994 * 109.47307 * 269.69059 * 1 2 3 31 31 H 1.09004 * 109.47161 * 149.69081 * 1 2 3 32 32 H 1.09002 * 109.46844 * 29.69651 * 1 2 3 33 33 H 1.07995 * 126.07182 * 359.97438 * 3 2 1 34 34 H 0.96999 * 120.00181 * 180.25300 * 5 4 3 35 35 H 1.09005 * 109.47004 * 209.99741 * 9 8 6 36 36 H 1.08997 * 109.47027 * 329.99940 * 9 8 6 37 37 H 1.08997 * 109.46999 * 60.00107 * 12 10 9 38 38 H 1.08998 * 109.46864 * 179.97438 * 12 10 9 39 39 H 1.09001 * 109.46669 * 299.99681 * 12 10 9 40 40 H 0.96698 * 113.99987 * 179.97438 * 13 10 9 41 41 H 1.09002 * 109.47012 * 59.99846 * 16 14 8 42 42 H 1.09004 * 109.47514 * 179.97438 * 16 14 8 43 43 H 1.08995 * 109.47339 * 299.99876 * 16 14 8 44 44 H 1.09002 * 109.46690 * 55.00576 * 17 14 8 45 45 H 1.09002 * 109.46877 * 175.00008 * 17 14 8 46 46 H 0.96695 * 113.99989 * 180.02562 * 18 17 14 47 47 H 1.09008 * 109.47239 * 209.99653 * 21 20 2 48 48 H 1.09004 * 109.47108 * 329.99407 * 21 20 2 49 49 H 0.96996 * 120.00038 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6371 0.6545 0.0028 5 7 4.7737 1.4751 0.0067 6 6 4.6370 2.8158 0.0132 7 8 3.5323 3.3147 -0.0820 8 7 5.7248 3.6037 0.1251 9 6 7.0633 3.0081 0.1292 10 6 7.5882 2.9233 -1.3055 11 1 7.6372 3.9243 -1.7341 12 6 8.9863 2.3019 -1.3011 13 8 6.7085 2.1129 -2.0874 14 6 5.5688 5.0556 0.2426 15 1 4.5091 5.3033 0.3055 16 6 6.1794 5.7352 -0.9846 17 6 6.2826 5.5448 1.5044 18 8 5.6378 5.0006 2.6577 19 7 3.6336 -0.6575 -0.0040 20 7 2.3016 -1.0909 -0.0058 21 6 1.8501 -2.4845 -0.0125 22 6 1.6944 -2.9554 -1.4355 23 1 1.9106 -2.2839 -2.2532 24 6 1.2769 -4.2439 -1.6936 25 7 1.1415 -4.6549 -2.9355 26 14 0.9036 -5.4056 -0.2793 27 1 -0.5275 -5.2823 0.0979 28 1 1.1867 -6.8020 -0.6978 29 1 1.7547 -5.0561 0.8863 30 1 -0.3633 -0.0055 1.0276 31 1 -0.3634 -0.8872 -0.5186 32 1 -0.3633 0.8927 -0.5091 33 1 1.9720 2.1211 -0.0004 34 1 5.6587 1.0778 0.0047 35 1 7.7342 3.6263 0.7257 36 1 7.0142 2.0071 0.5578 37 1 8.9376 1.3010 -0.8723 38 1 9.3600 2.2411 -2.3232 39 1 9.6570 2.9205 -0.7048 40 1 6.9799 2.0154 -3.0104 41 1 5.6708 5.3867 -1.8835 42 1 6.0629 6.8155 -0.8974 43 1 7.2390 5.4876 -1.0475 44 1 7.3228 5.2198 1.4824 45 1 6.2428 6.6333 1.5455 46 1 6.0382 5.2697 3.4958 47 1 2.5850 -3.1071 0.4979 48 1 0.8917 -2.5584 0.5016 49 1 0.8482 -5.5614 -3.1170 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615501381.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:36 Heat of formation + Delta-G solvation = -34.398403 kcal Electronic energy + Delta-G solvation = -31036.944277 eV Core-core repulsion = 26808.950048 eV Total energy + Delta-G solvation = -4227.994229 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 4.95 seconds Orbital eigenvalues (eV) -40.82500 -39.98723 -37.86741 -37.36812 -35.38749 -34.63206 -33.26440 -32.22168 -31.47091 -31.03548 -30.58330 -27.05281 -26.67089 -26.45851 -26.21865 -23.08724 -21.97092 -21.87116 -20.17919 -19.60820 -19.07272 -18.01086 -17.65306 -17.29056 -17.02200 -16.46960 -15.75332 -15.70310 -15.05192 -14.80501 -14.72023 -14.41366 -14.32571 -14.05147 -13.73590 -13.30548 -13.11754 -13.05437 -12.77267 -12.66397 -12.52676 -12.49085 -12.34769 -12.21853 -12.14790 -11.95580 -11.85640 -11.44909 -11.33608 -11.11886 -11.02139 -10.72504 -10.44886 -10.32929 -10.12142 -9.82951 -9.81669 -9.48741 -9.42781 -8.74625 -8.71439 -7.78208 -7.22767 -6.19104 -4.21256 2.45066 2.76629 3.19728 3.25317 3.27237 3.29374 3.47328 3.83475 3.92634 4.03450 4.24378 4.28340 4.51612 4.60942 4.69428 4.76798 4.84413 4.89632 5.02533 5.09524 5.12946 5.14216 5.28596 5.36597 5.46007 5.48135 5.52347 5.75625 5.79354 5.81292 5.88928 6.03285 6.15253 6.28856 6.46367 6.53085 6.63183 6.67881 6.78003 6.98558 7.11828 7.34807 7.38175 7.48107 7.67922 8.02234 8.07407 8.41562 8.79412 8.84347 8.88704 9.36758 10.93579 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015982 B = 0.002836 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.595100 B = 9870.807103 C =10761.246557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.092 3.908 3 C -0.285 4.285 4 C 0.293 3.707 5 N -0.632 5.632 6 C 0.732 3.268 7 O -0.570 6.570 8 N -0.611 5.611 9 C 0.114 3.886 10 C 0.073 3.927 11 H 0.064 0.936 12 C -0.187 4.187 13 O -0.554 6.554 14 C 0.154 3.846 15 H 0.112 0.888 16 C -0.162 4.162 17 C 0.064 3.936 18 O -0.561 6.561 19 N -0.324 5.324 20 N -0.322 5.322 21 C 0.233 3.767 22 C -0.538 4.538 23 H 0.081 0.919 24 C 0.078 3.922 25 N -0.888 5.888 26 Si 0.872 3.128 27 H -0.271 1.271 28 H -0.281 1.281 29 H -0.263 1.263 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.160 0.840 34 H 0.407 0.593 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.380 0.620 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.057 0.943 46 H 0.376 0.624 47 H 0.048 0.952 48 H 0.044 0.956 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.641 21.621 7.742 27.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.039 4.039 3 C -0.316 4.316 4 C 0.039 3.961 5 N -0.283 5.283 6 C 0.433 3.567 7 O -0.446 6.446 8 N -0.347 5.347 9 C -0.010 4.010 10 C 0.012 3.988 11 H 0.081 0.919 12 C -0.245 4.245 13 O -0.360 6.360 14 C 0.049 3.951 15 H 0.130 0.870 16 C -0.220 4.220 17 C -0.015 4.015 18 O -0.365 6.365 19 N -0.154 5.154 20 N -0.104 5.104 21 C 0.114 3.886 22 C -0.576 4.576 23 H 0.099 0.901 24 C -0.126 4.126 25 N -0.526 5.526 26 Si 0.698 3.302 27 H -0.196 1.196 28 H -0.206 1.206 29 H -0.188 1.188 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.178 0.822 34 H 0.244 0.756 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.227 0.773 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.222 0.778 47 H 0.066 0.934 48 H 0.062 0.938 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.756 20.341 7.683 26.278 hybrid contribution 0.860 -0.018 0.309 0.914 sum 15.616 20.324 7.992 26.847 Atomic orbital electron populations 1.20381 0.88049 1.04028 1.02287 1.21014 0.94767 0.87052 1.01060 1.21248 0.89826 0.99747 1.20823 1.18695 0.86816 0.89166 1.01460 1.41422 1.07375 1.03623 1.75847 1.15332 0.83956 0.80423 0.77002 1.90828 1.23720 1.73392 1.56636 1.46754 1.04290 1.05780 1.77892 1.21607 0.84870 0.99750 0.94798 1.22522 0.89002 0.94362 0.92870 0.91858 1.22498 0.96800 1.02382 1.02834 1.86628 1.51604 1.72143 1.25639 1.20926 1.03155 0.78617 0.92356 0.86987 1.22228 1.01033 1.00558 0.98181 1.22618 0.95452 0.96949 0.86461 1.86642 1.59056 1.74942 1.15904 1.77241 0.99146 1.08587 1.30422 1.48432 1.01289 1.06782 1.53858 1.19932 0.95144 0.74030 0.99516 1.21224 1.46910 0.98944 0.90515 0.90094 1.24813 0.94593 0.97463 0.95730 1.69878 1.45991 1.18241 1.18467 0.86905 0.79418 0.80935 0.82911 1.19649 1.20605 1.18788 0.91240 0.89992 0.90470 0.82224 0.75647 0.88884 0.90110 0.91352 0.91926 0.91656 0.77283 0.91091 0.91298 0.92214 0.93572 0.92498 0.77751 0.93369 0.93817 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.60 9.89 36.01 0.36 -1.25 16 2 C 0.09 2.05 6.92 -82.28 -0.57 1.48 16 3 C -0.29 -6.40 9.52 -39.83 -0.38 -6.78 16 4 C 0.29 6.56 8.11 -154.37 -1.25 5.31 16 5 N -0.63 -11.56 4.86 -15.51 -0.08 -11.63 16 6 C 0.73 12.68 7.66 -86.92 -0.67 12.02 16 7 O -0.57 -11.71 12.85 5.29 0.07 -11.64 16 8 N -0.61 -7.42 2.30 -171.80 -0.40 -7.81 16 9 C 0.11 1.01 4.57 -4.04 -0.02 0.99 16 10 C 0.07 0.57 3.59 -26.73 -0.10 0.47 16 11 H 0.06 0.43 5.42 -51.93 -0.28 0.15 16 12 C -0.19 -1.10 9.54 37.16 0.35 -0.75 16 13 O -0.55 -6.09 11.67 -35.23 -0.41 -6.50 16 14 C 0.15 1.55 2.90 -67.93 -0.20 1.35 16 15 H 0.11 1.47 6.94 -51.93 -0.36 1.11 16 16 C -0.16 -1.17 8.43 37.16 0.31 -0.85 16 17 C 0.06 0.46 6.35 37.16 0.24 0.70 16 18 O -0.56 -5.39 13.61 -35.23 -0.48 -5.86 16 19 N -0.32 -7.93 12.59 31.44 0.40 -7.53 16 20 N -0.32 -7.93 3.59 -58.33 -0.21 -8.14 16 21 C 0.23 5.87 4.88 -5.20 -0.03 5.84 16 22 C -0.54 -15.57 9.94 -34.44 -0.34 -15.91 16 23 H 0.08 2.66 8.06 -52.49 -0.42 2.23 16 24 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 25 N -0.89 -26.98 13.96 55.43 0.77 -26.21 16 26 Si 0.87 20.67 27.47 -169.99 -4.67 16.00 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 29 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.08 1.56 7.71 -51.93 -0.40 1.16 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.16 3.56 5.93 -52.49 -0.31 3.24 16 34 H 0.41 6.59 6.02 -40.82 -0.25 6.34 16 35 H 0.09 0.57 6.10 -51.93 -0.32 0.25 16 36 H 0.08 0.79 6.25 -51.93 -0.32 0.46 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.38 2.92 9.08 45.56 0.41 3.33 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.33 6.01 -51.93 -0.31 0.02 16 44 H 0.05 0.25 6.30 -51.93 -0.33 -0.08 16 45 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.38 1.77 9.12 45.56 0.42 2.18 16 47 H 0.05 1.22 7.20 -51.92 -0.37 0.85 16 48 H 0.04 1.01 7.08 -51.93 -0.37 0.64 16 49 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 392.06 15.07 5.91 5.91 Total: -1.00 -38.65 392.06 -7.24 -45.89 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -5.76 Total: 12.78 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -2.38 Total: 4.74 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: 0.49 Total: -61.32 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.82 Total: -24.01 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.67 Total: 16.00 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -38.65 -7.24 -45.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615501381.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.495 kcal (2) G-P(sol) polarization free energy of solvation -38.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.95 seconds