Wall clock time and date at job start Sat Apr 11 2020 06:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35242 * 126.06844 * 2 1 4 4 C 1.40408 * 107.86406 * 179.88056 * 3 2 1 5 5 N 1.40191 * 125.97227 * 180.15344 * 4 3 2 6 6 C 1.34776 * 120.00070 * 0.24698 * 5 4 3 7 7 O 1.21591 * 119.99990 * 354.68296 * 6 5 4 8 8 N 1.34780 * 120.00131 * 174.68337 * 6 5 4 9 9 C 1.46498 * 119.99831 * 5.01345 * 8 6 5 10 10 C 1.53002 * 109.47322 * 89.99908 * 9 8 6 11 11 H 1.09002 * 109.46924 * 59.99586 * 10 9 8 12 12 C 1.52999 * 109.47227 * 179.97438 * 10 9 8 13 13 O 1.42903 * 109.46977 * 300.00057 * 10 9 8 14 14 C 1.46503 * 120.00185 * 185.00924 * 8 6 5 15 15 H 1.09004 * 109.46965 * 4.74011 * 14 8 6 16 16 C 1.52996 * 109.47303 * 244.74019 * 14 8 6 17 17 C 1.53000 * 109.47108 * 124.73792 * 14 8 6 18 18 O 1.42898 * 109.47123 * 295.00439 * 17 14 8 19 19 N 1.31206 * 108.05328 * 0.38532 * 4 3 2 20 20 N 1.34961 * 126.06969 * 180.30512 * 2 1 3 21 21 C 1.46496 * 125.97711 * 359.96376 * 20 2 1 22 22 C 1.50699 * 109.47465 * 89.99608 * 21 20 2 23 23 H 1.07997 * 120.00099 * 0.02562 * 22 21 20 24 24 C 1.37883 * 120.00255 * 179.97438 * 22 21 20 25 25 N 1.31509 * 120.00039 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99751 * 0.02562 * 24 22 21 27 27 H 1.48502 * 109.46757 * 90.00186 * 26 24 22 28 28 H 1.48498 * 109.46826 * 210.00058 * 26 24 22 29 29 H 1.48497 * 109.47260 * 329.99867 * 26 24 22 30 30 H 1.08994 * 109.47307 * 269.69059 * 1 2 3 31 31 H 1.09004 * 109.47161 * 149.69081 * 1 2 3 32 32 H 1.09002 * 109.46844 * 29.69651 * 1 2 3 33 33 H 1.07995 * 126.07182 * 359.97438 * 3 2 1 34 34 H 0.96999 * 120.00181 * 180.25300 * 5 4 3 35 35 H 1.09005 * 109.47004 * 209.99741 * 9 8 6 36 36 H 1.08997 * 109.47027 * 329.99940 * 9 8 6 37 37 H 1.08997 * 109.46999 * 60.00107 * 12 10 9 38 38 H 1.08998 * 109.46864 * 179.97438 * 12 10 9 39 39 H 1.09001 * 109.46669 * 299.99681 * 12 10 9 40 40 H 0.96698 * 113.99987 * 179.97438 * 13 10 9 41 41 H 1.09002 * 109.47012 * 59.99846 * 16 14 8 42 42 H 1.09004 * 109.47514 * 179.97438 * 16 14 8 43 43 H 1.08995 * 109.47339 * 299.99876 * 16 14 8 44 44 H 1.09002 * 109.46690 * 55.00576 * 17 14 8 45 45 H 1.09002 * 109.46877 * 175.00008 * 17 14 8 46 46 H 0.96695 * 113.99989 * 180.02562 * 18 17 14 47 47 H 1.09008 * 109.47239 * 209.99653 * 21 20 2 48 48 H 1.09004 * 109.47108 * 329.99407 * 21 20 2 49 49 H 0.96996 * 120.00038 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6371 0.6545 0.0028 5 7 4.7737 1.4751 0.0067 6 6 4.6370 2.8158 0.0132 7 8 3.5323 3.3147 -0.0820 8 7 5.7248 3.6037 0.1251 9 6 7.0633 3.0081 0.1292 10 6 7.5882 2.9233 -1.3055 11 1 7.6372 3.9243 -1.7341 12 6 8.9863 2.3019 -1.3011 13 8 6.7085 2.1129 -2.0874 14 6 5.5688 5.0556 0.2426 15 1 4.5091 5.3033 0.3055 16 6 6.1794 5.7352 -0.9846 17 6 6.2826 5.5448 1.5044 18 8 5.6378 5.0006 2.6577 19 7 3.6336 -0.6575 -0.0040 20 7 2.3016 -1.0909 -0.0058 21 6 1.8501 -2.4845 -0.0125 22 6 1.6944 -2.9554 -1.4355 23 1 1.9106 -2.2839 -2.2532 24 6 1.2769 -4.2439 -1.6936 25 7 1.1415 -4.6549 -2.9355 26 14 0.9036 -5.4056 -0.2793 27 1 -0.5275 -5.2823 0.0979 28 1 1.1867 -6.8020 -0.6978 29 1 1.7547 -5.0561 0.8863 30 1 -0.3633 -0.0055 1.0276 31 1 -0.3634 -0.8872 -0.5186 32 1 -0.3633 0.8927 -0.5091 33 1 1.9720 2.1211 -0.0004 34 1 5.6587 1.0778 0.0047 35 1 7.7342 3.6263 0.7257 36 1 7.0142 2.0071 0.5578 37 1 8.9376 1.3010 -0.8723 38 1 9.3600 2.2411 -2.3232 39 1 9.6570 2.9205 -0.7048 40 1 6.9799 2.0154 -3.0104 41 1 5.6708 5.3867 -1.8835 42 1 6.0629 6.8155 -0.8974 43 1 7.2390 5.4876 -1.0475 44 1 7.3228 5.2198 1.4824 45 1 6.2428 6.6333 1.5455 46 1 6.0382 5.2697 3.4958 47 1 2.5850 -3.1071 0.4979 48 1 0.8917 -2.5584 0.5016 49 1 0.8482 -5.5614 -3.1170 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615501381.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:34 Heat of formation + Delta-G solvation = -66.771554 kcal Electronic energy + Delta-G solvation = -31038.348082 eV Core-core repulsion = 26808.950048 eV Total energy + Delta-G solvation = -4229.398034 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.35656 -41.33803 -38.87698 -38.06672 -36.40480 -36.09365 -35.22805 -33.48105 -32.78293 -32.59803 -31.66208 -28.91854 -27.85577 -27.44803 -27.07986 -24.78591 -23.49695 -22.55035 -21.48672 -21.19573 -20.25751 -19.22124 -19.20716 -18.34783 -18.21855 -17.67459 -17.26099 -16.83059 -16.60859 -16.27068 -15.79496 -15.58258 -15.33563 -15.20856 -14.93728 -14.84037 -14.47323 -14.18790 -13.91263 -13.80895 -13.72679 -13.60247 -13.37918 -13.31396 -13.19323 -13.13249 -12.91001 -12.83311 -12.59182 -12.53652 -12.26673 -12.03629 -11.83185 -11.80840 -11.54269 -11.36045 -11.03322 -10.88491 -10.86267 -10.77509 -9.77742 -9.52216 -8.96768 -8.39536 -6.50637 1.00261 1.15980 1.35433 1.38754 1.48943 1.69008 1.99869 2.27814 2.45201 2.83674 2.92616 3.26947 3.36263 3.82069 3.91107 3.95733 4.04850 4.11661 4.17131 4.26649 4.30736 4.43772 4.45102 4.54349 4.55286 4.62278 4.71088 4.76051 4.78560 4.80583 4.86467 4.94127 4.97816 5.02853 5.06821 5.16260 5.22370 5.24440 5.26848 5.35066 5.65548 5.80554 5.93125 6.04391 6.40564 6.52873 6.64460 6.87552 6.97435 7.11238 7.13489 7.48958 8.77418 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015982 B = 0.002836 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.595100 B = 9870.807103 C =10761.246557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.091 3.909 3 C -0.301 4.301 4 C 0.296 3.704 5 N -0.627 5.627 6 C 0.722 3.278 7 O -0.610 6.610 8 N -0.598 5.598 9 C 0.105 3.895 10 C 0.074 3.926 11 H 0.079 0.921 12 C -0.180 4.180 13 O -0.589 6.589 14 C 0.142 3.858 15 H 0.073 0.927 16 C -0.153 4.153 17 C 0.067 3.933 18 O -0.596 6.596 19 N -0.360 5.360 20 N -0.344 5.344 21 C 0.243 3.757 22 C -0.551 4.551 23 H 0.021 0.979 24 C 0.021 3.979 25 N -0.938 5.938 26 Si 0.953 3.047 27 H -0.249 1.249 28 H -0.277 1.277 29 H -0.245 1.245 30 H 0.102 0.898 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.160 0.840 34 H 0.415 0.585 35 H 0.132 0.868 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.390 0.610 41 H 0.045 0.955 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.396 0.604 47 H 0.049 0.951 48 H 0.073 0.927 49 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.093 22.721 9.969 30.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.039 4.039 3 C -0.332 4.332 4 C 0.041 3.959 5 N -0.278 5.278 6 C 0.424 3.576 7 O -0.489 6.489 8 N -0.333 5.333 9 C -0.018 4.018 10 C 0.014 3.986 11 H 0.097 0.903 12 C -0.238 4.238 13 O -0.397 6.397 14 C 0.039 3.961 15 H 0.091 0.909 16 C -0.211 4.211 17 C -0.011 4.011 18 O -0.404 6.404 19 N -0.190 5.190 20 N -0.126 5.126 21 C 0.123 3.877 22 C -0.589 4.589 23 H 0.039 0.961 24 C -0.178 4.178 25 N -0.577 5.577 26 Si 0.773 3.227 27 H -0.173 1.173 28 H -0.202 1.202 29 H -0.169 1.169 30 H 0.121 0.879 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.178 0.822 34 H 0.253 0.747 35 H 0.149 0.851 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.239 0.761 41 H 0.064 0.936 42 H 0.110 0.890 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.102 0.898 46 H 0.245 0.755 47 H 0.067 0.933 48 H 0.090 0.910 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 16.286 21.508 9.919 28.744 hybrid contribution 0.498 -0.182 -0.477 0.713 sum 16.783 21.326 9.442 28.734 Atomic orbital electron populations 1.20532 0.85056 1.04369 1.04484 1.21722 0.96698 0.86290 0.99211 1.21378 0.90177 0.99830 1.21797 1.19033 0.88225 0.89021 0.99640 1.41466 1.06651 1.03881 1.75851 1.15655 0.84882 0.80174 0.76916 1.90783 1.25767 1.73881 1.58452 1.46859 1.04142 1.06294 1.75984 1.21982 0.83631 0.99817 0.96351 1.22635 0.89398 0.94914 0.91654 0.90312 1.22431 0.95796 1.01873 1.03674 1.86592 1.53294 1.73001 1.26837 1.21226 1.01896 0.77363 0.95600 0.90877 1.22157 1.01842 1.01578 0.95478 1.22681 0.95912 0.98302 0.84182 1.86590 1.60459 1.75754 1.17601 1.77152 0.99696 1.09658 1.32517 1.48399 1.01752 1.06976 1.55493 1.19760 0.96356 0.74587 0.96998 1.21261 1.47713 0.98774 0.91124 0.96051 1.25853 0.93683 0.99209 0.99103 1.70038 1.46981 1.19191 1.21443 0.85653 0.80535 0.77594 0.78891 1.17304 1.20223 1.16884 0.87940 0.91164 0.88542 0.82240 0.74663 0.85056 0.91263 0.92730 0.91273 0.89211 0.76068 0.93576 0.88952 0.89689 0.90687 0.89839 0.75460 0.93339 0.90954 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.04 9.89 71.24 0.70 -2.33 16 2 C 0.09 4.11 6.92 41.39 0.29 4.40 16 3 C -0.30 -13.93 9.52 22.11 0.21 -13.72 16 4 C 0.30 13.77 8.11 133.32 1.08 14.85 16 5 N -0.63 -23.74 4.86 -321.23 -1.56 -25.30 16 6 C 0.72 25.81 7.66 179.05 1.37 27.18 16 7 O -0.61 -26.24 12.85 -4.00 -0.05 -26.29 16 8 N -0.60 -14.21 2.30 -815.70 -1.88 -16.09 16 9 C 0.10 1.67 4.57 86.38 0.39 2.06 16 10 C 0.07 1.02 3.59 30.59 0.11 1.13 16 11 H 0.08 0.85 5.42 -2.39 -0.01 0.84 16 12 C -0.18 -1.70 9.54 71.98 0.69 -1.01 16 13 O -0.59 -13.03 11.67 -148.98 -1.74 -14.77 16 14 C 0.14 2.71 2.90 44.99 0.13 2.84 16 15 H 0.07 1.98 6.94 -2.38 -0.02 1.97 16 16 C -0.15 -1.88 8.43 71.98 0.61 -1.27 16 17 C 0.07 0.78 6.35 71.98 0.46 1.24 16 18 O -0.60 -10.45 13.61 -148.98 -2.03 -12.47 16 19 N -0.36 -18.25 12.59 -54.43 -0.69 -18.93 16 20 N -0.34 -17.34 3.59 -338.45 -1.22 -18.55 16 21 C 0.24 12.26 4.88 85.63 0.42 12.68 16 22 C -0.55 -33.00 9.94 25.60 0.25 -32.75 16 23 H 0.02 1.49 8.06 -2.91 -0.02 1.46 16 24 C 0.02 1.22 5.47 84.66 0.46 1.68 16 25 N -0.94 -58.56 13.96 21.45 0.30 -58.26 16 26 Si 0.95 42.09 27.47 68.60 1.88 43.97 16 27 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 28 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 29 H -0.25 -10.09 6.54 99.48 0.65 -9.44 16 30 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 31 H 0.07 2.65 7.71 -2.39 -0.02 2.63 16 32 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 33 H 0.16 7.38 5.93 -2.91 -0.02 7.36 16 34 H 0.41 13.90 6.02 -92.71 -0.56 13.34 16 35 H 0.13 1.07 6.10 -2.38 -0.01 1.05 16 36 H 0.07 1.29 6.25 -2.39 -0.01 1.28 16 37 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.39 6.14 9.08 -74.06 -0.67 5.47 16 41 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.09 0.72 8.14 -2.38 -0.02 0.71 16 43 H 0.08 0.61 6.01 -2.39 -0.01 0.60 16 44 H 0.08 0.44 6.30 -2.39 -0.02 0.43 16 45 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.40 2.89 9.12 -74.06 -0.68 2.22 16 47 H 0.05 2.43 7.20 -2.38 -0.02 2.41 16 48 H 0.07 3.22 7.08 -2.38 -0.02 3.21 16 49 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -90.43 392.06 -0.75 -91.18 By element: Atomic # 1 Polarization: 39.49 SS G_CDS: -0.95 Total: 38.54 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 7.17 Total: 16.98 kcal Atomic # 7 Polarization: -132.09 SS G_CDS: -5.04 Total: -137.13 kcal Atomic # 8 Polarization: -49.72 SS G_CDS: -3.82 Total: -53.54 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 1.88 Total: 43.97 kcal Total: -90.43 -0.75 -91.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615501381.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.404 kcal (2) G-P(sol) polarization free energy of solvation -90.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds