Wall clock time and date at job start Sat Apr 11 2020 06:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47209 * 82.80881 * 3 2 1 5 5 N 1.46899 * 109.47102 * 179.97438 * 4 3 2 6 6 C 1.46901 * 110.99807 * 170.00062 * 5 4 3 7 7 C 1.53239 * 109.33852 * 187.25276 * 6 5 4 8 8 N 1.47077 * 108.52084 * 306.17142 * 7 6 5 9 9 C 1.34786 * 120.87854 * 231.18644 * 8 7 6 10 10 O 1.21279 * 120.00013 * 0.02562 * 9 8 7 11 11 C 1.50695 * 119.99702 * 180.02562 * 9 8 7 12 12 C 1.53001 * 109.47136 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.47166 * 305.97695 * 12 11 9 14 14 C 1.50708 * 109.47204 * 65.97266 * 12 11 9 15 15 H 1.07998 * 119.99881 * 26.86301 * 14 12 11 16 16 C 1.37871 * 120.00142 * 206.86457 * 14 12 11 17 17 N 1.31515 * 120.00104 * 353.56599 * 16 14 12 18 18 Si 1.86797 * 120.00047 * 173.57351 * 16 14 12 19 19 H 1.48505 * 109.47279 * 179.97438 * 18 16 14 20 20 H 1.48507 * 109.46786 * 299.99189 * 18 16 14 21 21 H 1.48496 * 109.47392 * 59.99495 * 18 16 14 22 22 C 1.50696 * 109.47412 * 185.97399 * 12 11 9 23 23 C 1.38234 * 120.00101 * 294.43411 * 22 12 11 24 24 C 1.38233 * 120.00199 * 179.80835 * 23 22 12 25 25 C 1.38235 * 119.99835 * 0.39996 * 24 23 22 26 26 C 1.38237 * 120.00057 * 359.85843 * 25 24 23 27 27 C 1.38233 * 119.99907 * 359.94984 * 26 25 24 28 28 C 1.47073 * 118.24110 * 51.45925 * 8 7 6 29 29 C 1.46898 * 110.99955 * 294.30203 * 5 4 3 30 30 H 4.44649 * 5.63385 * 180.02562 * 4 1 2 31 31 H 1.08995 * 109.47540 * 322.80529 * 3 2 1 32 32 H 1.09006 * 109.46773 * 202.80472 * 3 2 1 33 33 H 1.09007 * 109.46770 * 60.00022 * 4 3 2 34 34 H 1.08997 * 109.46710 * 300.00046 * 4 3 2 35 35 H 1.08997 * 109.49586 * 67.29478 * 6 5 4 36 36 H 1.09000 * 109.48943 * 307.21279 * 6 5 4 37 37 H 1.09000 * 109.62542 * 186.45796 * 7 6 5 38 38 H 1.09001 * 109.62994 * 65.87745 * 7 6 5 39 39 H 1.08994 * 109.47505 * 59.99827 * 11 9 8 40 40 H 1.08999 * 109.47213 * 299.99810 * 11 9 8 41 41 H 0.97004 * 119.99972 * 354.40610 * 17 16 14 42 42 H 1.07995 * 119.99801 * 0.02562 * 23 22 12 43 43 H 1.07997 * 120.00815 * 180.23581 * 24 23 22 44 44 H 1.07999 * 120.00390 * 179.83123 * 25 24 23 45 45 H 1.08000 * 120.00188 * 179.97438 * 26 25 24 46 46 H 1.08002 * 119.99985 * 180.02562 * 27 26 25 47 47 H 1.09000 * 109.63191 * 68.24640 * 28 8 7 48 48 H 1.09002 * 109.63166 * 188.83185 * 28 8 7 49 49 H 1.09006 * 109.49293 * 292.70210 * 29 5 4 50 50 H 1.09001 * 109.49719 * 52.78865 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1561 -0.1797 -1.4312 5 7 4.6251 -0.1784 -1.4312 6 6 5.1518 -0.5835 -2.7414 7 6 6.6729 -0.7447 -2.6490 8 7 7.2423 0.4984 -2.1070 9 6 8.2604 1.1228 -2.7318 10 8 8.7187 0.6607 -3.7551 11 6 8.8292 2.3952 -2.1586 12 6 9.9659 2.8940 -3.0530 13 1 10.6975 2.0976 -3.1889 14 6 9.4094 3.2991 -4.3937 15 1 8.3840 3.6280 -4.4757 16 6 10.2093 3.2497 -5.5156 17 7 11.4895 2.9719 -5.3987 18 14 9.4749 3.5776 -7.2015 19 1 10.5363 3.4653 -8.2342 20 1 8.4073 2.5832 -7.4782 21 1 8.8976 4.9454 -7.2325 22 6 10.6305 4.0815 -2.4055 23 6 9.9278 5.2599 -2.2368 24 6 10.5362 6.3479 -1.6392 25 6 11.8498 6.2601 -1.2179 26 6 12.5542 5.0833 -1.3914 27 6 11.9445 3.9941 -1.9854 28 6 6.6755 1.0387 -0.8621 29 6 5.1504 1.1328 -1.0279 30 1 -1.0500 0.0002 -0.0001 31 1 3.0097 -0.8177 0.6212 32 1 3.0088 0.9482 0.3983 33 1 2.7923 0.6389 -2.0523 34 1 2.7931 -1.1271 -1.8295 35 1 4.9112 0.1793 -3.4818 36 1 4.7027 -1.5319 -3.0364 37 1 7.0820 -0.9326 -3.6416 38 1 6.9134 -1.5766 -1.9871 39 1 9.2133 2.2026 -1.1569 40 1 8.0469 3.1526 -2.1083 41 1 11.8879 2.8818 -4.5188 42 1 8.9025 5.3294 -2.5686 43 1 9.9861 7.2674 -1.5039 44 1 12.3261 7.1109 -0.7535 45 1 13.5806 5.0148 -1.0626 46 1 12.4947 3.0746 -2.1206 47 1 6.9162 0.3748 -0.0318 48 1 7.0865 2.0303 -0.6727 49 1 4.9098 1.8718 -1.7923 50 1 4.7004 1.4292 -0.0804 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793329762.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:11 Heat of formation + Delta-G solvation = 48.707679 kcal Electronic energy + Delta-G solvation = -29397.734439 eV Core-core repulsion = 25584.193224 eV Total energy + Delta-G solvation = -3813.541215 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 3.35 seconds Orbital eigenvalues (eV) -39.92698 -38.63717 -37.90284 -35.42977 -34.28473 -33.63366 -31.66803 -31.05161 -30.13189 -30.11493 -28.93693 -26.84471 -24.98633 -23.82976 -23.12913 -22.47092 -21.67929 -20.99145 -19.88789 -18.58651 -18.30560 -16.98011 -16.66162 -15.95511 -15.78856 -15.42855 -15.25855 -15.09012 -14.87199 -14.52774 -14.18073 -14.08051 -13.67021 -13.59148 -13.22103 -13.16016 -12.82633 -12.62717 -12.44309 -12.21167 -12.14870 -11.95545 -11.77393 -11.55373 -11.33567 -11.20278 -11.18449 -10.92422 -10.72322 -10.48922 -10.43534 -10.31397 -10.13022 -10.04321 -9.66724 -9.01565 -8.72213 -8.61926 -8.30024 -8.18130 -8.14836 -7.64622 -6.22411 -3.91432 2.18108 2.23571 2.47644 2.54854 3.29681 3.39760 3.49362 3.54835 3.65472 3.70667 4.20697 4.59908 4.65003 4.67070 4.75383 4.84308 4.93696 5.15034 5.18994 5.21602 5.29645 5.36963 5.45968 5.52214 5.58865 5.60351 5.62516 5.64633 5.65582 5.74702 5.75642 5.80892 5.93232 5.97738 6.04268 6.09276 6.15394 6.30755 6.40952 6.63948 6.72802 6.76380 6.79597 6.87775 6.94296 7.20140 7.21931 7.31803 7.37294 7.72164 7.84534 7.89522 8.22209 8.51057 8.94374 8.98435 9.77319 11.17006 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011327 B = 0.002919 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.455065 B = 9588.998773 C =10820.406932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.184 4.184 3 C -0.011 4.011 4 C 0.061 3.939 5 N -0.538 5.538 6 C 0.043 3.957 7 C 0.119 3.881 8 N -0.632 5.632 9 C 0.517 3.483 10 O -0.498 6.498 11 C -0.113 4.113 12 C 0.073 3.927 13 H 0.049 0.951 14 C -0.566 4.566 15 H 0.044 0.956 16 C 0.032 3.968 17 N -0.906 5.906 18 Si 1.060 2.940 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.291 1.291 22 C -0.033 4.033 23 C -0.106 4.106 24 C -0.130 4.130 25 C -0.152 4.152 26 C -0.124 4.124 27 C -0.130 4.130 28 C 0.117 3.883 29 C 0.035 3.965 30 H 0.216 0.784 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.038 0.962 34 H 0.079 0.921 35 H 0.040 0.960 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.271 0.729 42 H 0.114 0.886 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.110 0.890 47 H 0.071 0.929 48 H 0.090 0.910 49 H 0.042 0.958 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.604 -3.672 13.198 20.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.184 4.184 3 C -0.048 4.048 4 C -0.067 4.067 5 N -0.262 5.262 6 C -0.085 4.085 7 C -0.004 4.004 8 N -0.370 5.370 9 C 0.306 3.694 10 O -0.369 6.369 11 C -0.154 4.154 12 C 0.054 3.946 13 H 0.067 0.933 14 C -0.604 4.604 15 H 0.062 0.938 16 C -0.174 4.174 17 N -0.541 5.541 18 Si 0.889 3.111 19 H -0.209 1.209 20 H -0.215 1.215 21 H -0.218 1.218 22 C -0.034 4.034 23 C -0.125 4.125 24 C -0.148 4.148 25 C -0.170 4.170 26 C -0.142 4.142 27 C -0.148 4.148 28 C -0.007 4.007 29 C -0.094 4.094 30 H 0.233 0.767 31 H 0.114 0.886 32 H 0.106 0.894 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.102 0.898 37 H 0.113 0.887 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.132 0.868 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.126 0.874 46 H 0.128 0.872 47 H 0.089 0.911 48 H 0.108 0.892 49 H 0.060 0.940 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.769 -4.246 11.292 18.307 hybrid contribution -1.010 0.749 1.046 1.636 sum -14.779 -3.497 12.339 19.568 Atomic orbital electron populations 1.24912 0.95983 1.01504 1.00551 1.23095 0.94511 1.00184 1.00616 1.18729 0.84203 1.03856 0.98011 1.22004 0.87406 1.01789 0.95493 1.61927 1.06638 1.28527 1.29141 1.22501 0.96064 1.00827 0.89120 1.21510 0.91027 0.86860 1.00990 1.48342 1.36458 1.26156 1.26076 1.20896 0.78676 0.85778 0.84068 1.90740 1.58357 1.65279 1.22523 1.21667 1.00446 0.94128 0.99117 1.17869 0.92467 0.91129 0.93162 0.93263 1.21510 0.98449 1.48607 0.91830 0.93809 1.25565 0.95048 0.93584 1.03163 1.70732 1.11682 1.44051 1.27630 0.83691 0.75417 0.75964 0.76033 1.20910 1.21549 1.21765 1.20853 0.93633 0.97658 0.91231 1.20910 1.00231 0.92725 0.98588 1.21012 0.95265 0.98184 1.00363 1.20826 0.95138 0.97543 1.03521 1.20967 0.98931 0.93833 1.00519 1.21076 0.95586 0.98386 0.99741 1.21791 0.91731 1.00083 0.87105 1.22688 0.95895 0.89759 1.01039 0.76694 0.88562 0.89423 0.94394 0.90273 0.94119 0.89820 0.88671 0.91526 0.91650 0.90393 0.91777 0.86765 0.87466 0.87583 0.87443 0.87152 0.91111 0.89201 0.94001 0.89596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.71 19.25 29.55 0.57 -1.14 16 2 C -0.18 -1.65 13.34 -37.12 -0.50 -2.15 16 3 C -0.01 -0.09 5.63 -29.52 -0.17 -0.25 16 4 C 0.06 0.53 4.92 -3.82 -0.02 0.52 16 5 N -0.54 -5.43 4.63 -234.02 -1.08 -6.51 16 6 C 0.04 0.49 5.62 -3.70 -0.02 0.47 16 7 C 0.12 1.64 6.60 -3.60 -0.02 1.62 16 8 N -0.63 -9.74 3.00 -172.18 -0.52 -10.26 16 9 C 0.52 10.39 7.46 -10.98 -0.08 10.31 16 10 O -0.50 -12.47 14.47 5.56 0.08 -12.39 16 11 C -0.11 -2.19 3.32 -27.89 -0.09 -2.28 16 12 C 0.07 1.74 1.23 -92.92 -0.11 1.62 16 13 H 0.05 1.34 6.58 -51.93 -0.34 1.00 16 14 C -0.57 -15.39 6.35 -34.44 -0.22 -15.61 16 15 H 0.04 1.20 7.82 -52.49 -0.41 0.79 16 16 C 0.03 0.92 5.45 -17.82 -0.10 0.83 16 17 N -0.91 -27.72 13.56 55.43 0.75 -26.97 16 18 Si 1.06 26.32 29.91 -169.99 -5.08 21.24 16 19 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 C -0.03 -0.73 4.54 -104.63 -0.47 -1.20 16 23 C -0.11 -2.16 8.90 -39.58 -0.35 -2.51 16 24 C -0.13 -2.32 10.05 -39.58 -0.40 -2.72 16 25 C -0.15 -2.62 10.05 -39.58 -0.40 -3.02 16 26 C -0.12 -2.26 10.05 -39.58 -0.40 -2.66 16 27 C -0.13 -2.69 9.18 -39.58 -0.36 -3.06 16 28 C 0.12 1.35 6.53 -3.36 -0.02 1.33 16 29 C 0.03 0.35 5.48 -3.46 -0.02 0.33 16 30 H 0.22 1.01 7.80 -54.09 -0.42 0.59 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.62 6.40 -51.93 -0.33 0.29 16 33 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16 34 H 0.08 0.67 7.97 -51.93 -0.41 0.25 16 35 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.80 7.99 -51.93 -0.41 0.38 16 37 H 0.10 1.52 7.06 -51.93 -0.37 1.15 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.07 1.10 7.99 -51.93 -0.41 0.69 16 40 H 0.08 1.41 7.50 -51.93 -0.39 1.02 16 41 H 0.27 8.16 6.25 -40.82 -0.25 7.90 16 42 H 0.11 2.26 7.85 -52.49 -0.41 1.85 16 43 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 44 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 45 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 46 H 0.11 2.27 7.95 -52.49 -0.42 1.85 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.09 0.99 6.02 -51.93 -0.31 0.68 16 49 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.09 0.67 6.16 -51.93 -0.32 0.35 16 LS Contribution 405.17 15.07 6.11 6.11 Total: -1.00 -33.95 405.17 -10.75 -44.71 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -7.82 Total: 3.65 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -3.19 Total: -19.57 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: -0.85 Total: -43.74 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.08 Total: -12.39 kcal Atomic # 14 Polarization: 26.32 SS G_CDS: -5.08 Total: 21.24 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.95 -10.75 -44.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793329762.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.417 kcal (2) G-P(sol) polarization free energy of solvation -33.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.35 seconds