Wall clock time and date at job start Sat Apr 11 2020 06:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46986 * 2 1 4 4 C 1.52995 * 109.47208 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47165 * 180.02562 * 4 3 2 6 6 C 1.36903 * 119.93492 * 269.72846 * 5 4 3 7 7 N 1.37658 * 120.58571 * 359.97438 * 6 5 4 8 8 C 1.38462 * 118.83648 * 179.74195 * 6 5 4 9 9 N 1.41090 * 120.64725 * 180.23647 * 8 6 5 10 10 C 1.46904 * 110.99730 * 244.26525 * 9 8 6 11 11 C 1.52995 * 109.47017 * 75.66835 * 10 9 8 12 12 C 1.46900 * 111.00001 * 120.31728 * 9 8 6 13 13 C 1.52998 * 109.46972 * 284.24761 * 12 9 8 14 14 H 1.08999 * 109.47263 * 54.89507 * 13 12 9 15 15 O 1.42901 * 109.47334 * 294.89797 * 13 12 9 16 16 C 1.50695 * 109.47320 * 174.89613 * 13 12 9 17 17 H 1.08006 * 120.00169 * 0.02562 * 16 13 12 18 18 C 1.37884 * 120.00211 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99759 * 180.02562 * 18 16 13 20 20 Si 1.86799 * 119.99741 * 359.97438 * 18 16 13 21 21 H 1.48501 * 109.47162 * 90.00184 * 20 18 16 22 22 H 1.48502 * 109.46989 * 210.00110 * 20 18 16 23 23 H 1.48501 * 109.47521 * 330.00111 * 20 18 16 24 24 C 1.39980 * 118.70191 * 0.53961 * 8 6 5 25 25 O 1.35364 * 120.11882 * 179.69458 * 24 8 6 26 26 N 1.32849 * 119.76805 * 359.71937 * 24 8 6 27 27 C 1.32884 * 121.19012 * 359.97438 * 26 24 8 28 28 O 1.22052 * 119.31534 * 180.02562 * 27 26 24 29 29 H 1.09004 * 109.46670 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46916 * 299.99175 * 1 2 3 31 31 H 1.08997 * 109.47537 * 60.00044 * 1 2 3 32 32 H 1.09003 * 109.47377 * 240.01088 * 2 1 3 33 33 H 1.08996 * 109.47828 * 120.00412 * 2 1 3 34 34 H 1.09003 * 109.46619 * 60.00644 * 3 2 1 35 35 H 1.08996 * 109.47174 * 300.00813 * 3 2 1 36 36 H 1.09007 * 109.47213 * 299.99969 * 4 3 2 37 37 H 1.08992 * 109.47193 * 60.00198 * 4 3 2 38 38 H 0.97002 * 119.99515 * 359.97438 * 7 6 5 39 39 H 0.96994 * 120.00878 * 180.02562 * 7 6 5 40 40 H 1.08995 * 109.47066 * 195.66988 * 10 9 8 41 41 H 1.09001 * 109.47124 * 315.67207 * 10 9 8 42 42 H 1.09001 * 109.47655 * 180.02562 * 11 10 9 43 43 H 1.09009 * 109.47407 * 300.00251 * 11 10 9 44 44 H 1.09001 * 109.47195 * 59.99507 * 11 10 9 45 45 H 1.09001 * 109.47495 * 44.24954 * 12 9 8 46 46 H 1.08998 * 109.47337 * 164.25149 * 12 9 8 47 47 H 0.96701 * 113.99650 * 299.99908 * 15 13 12 48 48 H 0.97004 * 119.99204 * 180.02562 * 19 18 16 49 49 H 0.96696 * 113.99854 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.2907 3.4668 -1.1861 7 7 4.0703 2.8268 -2.3848 8 6 4.7469 4.7739 -1.1590 9 7 4.9942 5.4743 -2.3585 10 6 6.4192 5.8067 -2.4897 11 6 7.2013 4.5523 -2.8838 12 6 4.1620 6.6818 -2.4443 13 6 2.7261 6.2875 -2.7958 14 1 2.3623 5.5576 -2.0726 15 8 2.6959 5.7162 -4.1053 16 6 1.8464 7.5105 -2.7609 17 1 2.2693 8.4730 -2.5133 18 6 0.5016 7.4010 -3.0452 19 7 -0.2659 8.4685 -3.0152 20 14 -0.2296 5.7365 -3.4742 21 1 -0.6909 5.0637 -2.2332 22 1 -1.3811 5.9237 -4.3931 23 1 0.8017 4.8987 -4.1373 24 6 4.9639 5.3846 0.0817 25 8 5.4155 6.6593 0.1416 26 7 4.7257 4.7086 1.2003 27 6 4.2821 3.4564 1.1664 28 8 4.0741 2.8675 2.2150 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6765 1.9564 -0.8899 36 1 3.9337 0.9286 0.8892 37 1 3.9329 0.9290 -0.8908 38 1 3.7477 1.9120 -2.3939 39 1 4.2382 3.2901 -3.2202 40 1 6.5450 6.5697 -3.2579 41 1 6.7933 6.1841 -1.5381 42 1 8.2586 4.7987 -2.9807 43 1 7.0754 3.7892 -2.1156 44 1 6.8271 4.1748 -3.8354 45 1 4.1723 7.1991 -1.4850 46 1 4.5571 7.3413 -3.2170 47 1 3.0068 6.3113 -4.8012 48 1 -1.2120 8.3913 -3.2148 49 1 5.5345 6.9924 1.0416 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809577013.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:31 Heat of formation + Delta-G solvation = -108.870760 kcal Electronic energy + Delta-G solvation = -32549.870512 eV Core-core repulsion = 28318.646919 eV Total energy + Delta-G solvation = -4231.223592 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 6.44 seconds Orbital eigenvalues (eV) -42.95514 -40.32088 -39.00676 -38.20181 -37.06320 -36.48658 -35.45079 -34.35832 -34.18282 -32.07804 -30.80269 -30.10841 -28.76767 -25.98760 -25.87830 -24.55502 -24.05409 -22.39510 -22.22252 -21.87958 -20.92868 -19.77550 -19.36052 -18.13557 -17.72366 -17.47055 -16.94253 -16.79940 -16.72617 -16.32149 -16.19868 -15.83711 -15.66664 -15.53486 -15.24619 -14.97663 -14.80567 -14.66552 -14.21500 -14.12519 -13.92511 -13.71476 -13.48474 -13.10650 -12.95557 -12.84856 -12.52827 -12.43671 -12.42670 -12.30170 -12.09858 -11.94949 -11.79670 -11.62305 -11.58301 -11.16492 -11.09672 -10.96660 -10.79012 -10.66046 -10.08055 -9.26839 -8.86034 -8.32683 -6.46031 -0.07018 0.71545 1.13393 1.38928 1.44073 1.72108 2.18712 2.43774 2.60493 2.72249 2.90693 3.06435 3.48395 3.69242 3.72933 3.96986 4.03354 4.15522 4.17665 4.24470 4.36905 4.41678 4.49384 4.54880 4.56656 4.60267 4.73799 4.80870 4.87419 4.92285 4.99981 5.08325 5.10438 5.16409 5.20005 5.22453 5.28338 5.38675 5.46549 5.51810 5.57974 5.89981 6.11851 6.16283 6.19656 6.43029 6.52092 6.68133 6.85413 7.18379 7.27618 7.46055 8.81819 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008000 B = 0.005892 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3499.152870 B = 4751.185983 C = 6631.319640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.111 4.111 3 C -0.137 4.137 4 C 0.091 3.909 5 N -0.540 5.540 6 C 0.532 3.468 7 N -0.787 5.787 8 C -0.179 4.179 9 N -0.444 5.444 10 C 0.049 3.951 11 C -0.132 4.132 12 C 0.052 3.948 13 C 0.226 3.774 14 H 0.031 0.969 15 O -0.568 6.568 16 C -0.562 4.562 17 H 0.032 0.968 18 C 0.024 3.976 19 N -0.944 5.944 20 Si 0.935 3.065 21 H -0.300 1.300 22 H -0.302 1.302 23 H -0.183 1.183 24 C 0.449 3.551 25 O -0.444 6.444 26 N -0.679 5.679 27 C 0.664 3.336 28 O -0.589 6.589 29 H 0.072 0.928 30 H 0.039 0.961 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.129 0.871 38 H 0.419 0.581 39 H 0.441 0.559 40 H 0.079 0.921 41 H 0.035 0.965 42 H 0.068 0.932 43 H 0.038 0.962 44 H 0.069 0.931 45 H 0.034 0.966 46 H 0.076 0.924 47 H 0.368 0.632 48 H 0.264 0.736 49 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.976 -17.964 -2.789 22.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.149 4.149 3 C -0.176 4.176 4 C -0.030 4.030 5 N -0.265 5.265 6 C 0.301 3.699 7 N -0.331 5.331 8 C -0.287 4.287 9 N -0.166 5.166 10 C -0.078 4.078 11 C -0.189 4.189 12 C -0.075 4.075 13 C 0.167 3.833 14 H 0.049 0.951 15 O -0.375 6.375 16 C -0.601 4.601 17 H 0.051 0.949 18 C -0.175 4.175 19 N -0.583 5.583 20 Si 0.760 3.240 21 H -0.228 1.228 22 H -0.229 1.229 23 H -0.104 1.104 24 C 0.256 3.744 25 O -0.241 6.241 26 N -0.442 5.442 27 C 0.366 3.634 28 O -0.469 6.469 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.147 0.853 38 H 0.254 0.746 39 H 0.279 0.721 40 H 0.098 0.902 41 H 0.053 0.947 42 H 0.087 0.913 43 H 0.057 0.943 44 H 0.088 0.912 45 H 0.052 0.948 46 H 0.094 0.906 47 H 0.216 0.784 48 H 0.072 0.928 49 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 12.471 -18.836 -2.056 22.683 hybrid contribution -0.794 1.244 0.538 1.571 sum 11.677 -17.592 -1.519 21.169 Atomic orbital electron populations 1.21799 0.95950 1.02433 1.01288 1.21411 0.95878 0.93690 1.03895 1.21991 0.93892 0.99803 1.01902 1.22215 0.95273 0.78890 1.06672 1.46623 1.58038 1.16903 1.04937 1.17522 0.83627 0.87581 0.81218 1.42357 1.68414 1.17826 1.04536 1.17505 1.28416 0.94317 0.88467 1.59463 1.05988 1.22442 1.28684 1.22281 0.86253 0.98736 1.00495 1.21639 0.99309 0.96485 1.01505 1.22682 0.94097 0.90335 1.00369 1.19176 0.90831 0.90676 0.82572 0.95107 1.86504 1.88488 1.45133 1.17333 1.21922 0.94217 0.95567 1.48355 0.94940 1.25897 0.97671 1.00487 0.93464 1.70109 1.06271 1.31789 1.50155 0.86078 0.78428 0.81721 0.77783 1.22807 1.22919 1.10369 1.20885 0.79884 0.83845 0.89786 1.85111 1.78565 1.22810 1.37618 1.69330 1.36452 1.09659 1.28767 1.17199 0.79428 0.84005 0.82748 1.90921 1.59059 1.66193 1.30681 0.90871 0.94151 0.93084 0.88791 0.91038 0.94132 0.91731 0.87953 0.85311 0.74644 0.72118 0.90229 0.94711 0.91329 0.94290 0.91169 0.94815 0.90551 0.78414 0.92775 0.72146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.91 71.98 0.71 -1.90 16 2 C -0.11 -1.61 5.93 30.60 0.18 -1.42 16 3 C -0.14 -2.86 5.54 30.59 0.17 -2.69 16 4 C 0.09 1.73 4.93 86.38 0.43 2.16 16 5 N -0.54 -14.69 2.61 -653.96 -1.71 -16.40 16 6 C 0.53 13.30 7.54 131.95 1.00 14.29 16 7 N -0.79 -13.06 8.86 -54.11 -0.48 -13.54 16 8 C -0.18 -5.24 3.42 38.12 0.13 -5.11 16 9 N -0.44 -12.04 3.53 -693.19 -2.45 -14.48 16 10 C 0.05 1.11 5.50 86.30 0.47 1.58 16 11 C -0.13 -2.28 10.02 71.98 0.72 -1.56 16 12 C 0.05 1.84 4.34 86.30 0.37 2.21 16 13 C 0.23 9.50 2.39 29.85 0.07 9.58 16 14 H 0.03 1.42 7.03 -2.39 -0.02 1.41 16 15 O -0.57 -20.77 10.09 -148.98 -1.50 -22.27 16 16 C -0.56 -30.59 9.34 25.60 0.24 -30.35 16 17 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 18 C 0.02 1.35 5.47 84.66 0.46 1.82 16 19 N -0.94 -58.60 13.96 21.45 0.30 -58.30 16 20 Si 0.94 43.68 26.99 68.60 1.85 45.54 16 21 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 22 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 23 H -0.18 -7.50 5.31 99.48 0.53 -6.97 16 24 C 0.45 14.63 7.19 84.96 0.61 15.24 16 25 O -0.44 -12.61 9.61 -86.55 -0.83 -13.44 16 26 N -0.68 -25.20 10.37 -439.11 -4.55 -29.75 16 27 C 0.66 24.56 8.33 179.71 1.50 26.06 16 28 O -0.59 -25.10 16.72 -5.49 -0.09 -25.19 16 29 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.04 0.78 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.10 2.13 7.38 -2.38 -0.02 2.11 16 37 H 0.13 1.21 6.43 -2.39 -0.02 1.20 16 38 H 0.42 4.10 6.76 -92.71 -0.63 3.47 16 39 H 0.44 7.56 8.12 -92.71 -0.75 6.80 16 40 H 0.08 1.71 7.60 -2.39 -0.02 1.69 16 41 H 0.03 0.86 6.09 -2.39 -0.01 0.85 16 42 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.04 0.73 7.71 -2.38 -0.02 0.71 16 44 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.03 1.34 5.73 -2.39 -0.01 1.32 16 46 H 0.08 2.56 7.60 -2.39 -0.02 2.55 16 47 H 0.37 11.91 9.04 -74.06 -0.67 11.24 16 48 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 49 H 0.42 9.00 8.98 -74.06 -0.67 8.33 16 Total: -1.00 -80.66 390.17 -4.27 -84.94 By element: Atomic # 1 Polarization: 34.87 SS G_CDS: -1.87 Total: 33.00 kcal Atomic # 6 Polarization: 22.83 SS G_CDS: 7.07 Total: 29.90 kcal Atomic # 7 Polarization: -123.58 SS G_CDS: -8.89 Total: -132.47 kcal Atomic # 8 Polarization: -58.47 SS G_CDS: -2.43 Total: -60.90 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.85 Total: 45.54 kcal Total: -80.66 -4.27 -84.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809577013.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.935 kcal (2) G-P(sol) polarization free energy of solvation -80.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.44 seconds