Wall clock time and date at job start Sat Apr 11 2020 06:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00374 * 2 1 4 4 H 1.48503 * 109.47185 * 270.00231 * 3 2 1 5 5 H 1.48500 * 109.47134 * 30.00159 * 3 2 1 6 6 H 1.48504 * 109.47376 * 150.00195 * 3 2 1 7 7 C 1.37881 * 119.99608 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00236 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99885 * 179.97438 * 7 2 1 10 10 N 1.46900 * 109.46820 * 175.67088 * 9 7 2 11 11 C 1.46894 * 111.00391 * 295.18174 * 10 9 7 12 12 C 1.53237 * 109.34322 * 187.25254 * 11 10 9 13 13 N 1.47080 * 108.52332 * 306.17750 * 12 11 10 14 14 C 1.34773 * 120.87838 * 231.18427 * 13 12 11 15 15 O 1.21356 * 120.00299 * 8.21244 * 14 13 12 16 16 C 1.49448 * 120.00114 * 188.20771 * 14 13 12 17 17 O 1.21357 * 119.99833 * 6.38732 * 16 14 13 18 18 N 1.34776 * 120.00539 * 186.10463 * 16 14 13 19 19 C 1.46501 * 120.00387 * 180.27800 * 18 16 14 20 20 C 1.53002 * 109.47030 * 180.02562 * 19 18 16 21 21 H 1.09000 * 109.50409 * 305.08420 * 20 19 18 22 22 C 1.53098 * 109.50092 * 184.99940 * 20 19 18 23 23 N 1.47019 * 109.25420 * 183.21583 * 22 20 19 24 24 C 1.47016 * 110.75375 * 58.61739 * 23 22 20 25 25 C 1.53103 * 109.25656 * 301.38662 * 24 23 22 26 26 O 1.43011 * 109.26076 * 56.84699 * 25 24 23 27 27 C 1.47081 * 118.23904 * 51.44991 * 13 12 11 28 28 C 1.46896 * 111.00035 * 59.48914 * 10 9 7 29 29 H 0.97004 * 119.99681 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46512 * 55.67972 * 9 7 2 31 31 H 1.09000 * 109.47375 * 295.67674 * 9 7 2 32 32 H 1.09004 * 109.49017 * 67.29864 * 11 10 9 33 33 H 1.08996 * 109.51965 * 307.22983 * 11 10 9 34 34 H 1.09001 * 109.63249 * 186.46022 * 12 11 10 35 35 H 1.09005 * 109.78504 * 65.97946 * 12 11 10 36 36 H 0.97001 * 119.99765 * 0.28174 * 18 16 14 37 37 H 1.08996 * 109.46948 * 300.00271 * 19 18 16 38 38 H 1.08993 * 109.46731 * 60.00083 * 19 18 16 39 39 H 1.08997 * 109.50823 * 303.14639 * 22 20 19 40 40 H 1.08999 * 109.50929 * 63.24331 * 22 20 19 41 41 H 1.00902 * 111.00064 * 182.39058 * 23 22 20 42 42 H 1.09001 * 109.50540 * 61.31676 * 24 23 22 43 43 H 1.08994 * 109.50767 * 181.44728 * 24 23 22 44 44 H 1.08995 * 109.50663 * 176.78257 * 25 24 23 45 45 H 1.09000 * 109.50416 * 296.86724 * 25 24 23 46 46 H 1.09004 * 109.62398 * 68.25580 * 27 13 12 47 47 H 1.08995 * 109.62622 * 188.83580 * 27 13 12 48 48 H 1.08998 * 109.49168 * 292.70184 * 28 10 9 49 49 H 1.09004 * 109.49401 * 52.75546 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1295 0.0005 9 6 3.5115 -1.1942 0.0000 10 7 4.0010 -2.5752 0.1052 11 6 3.6269 -3.1696 1.3954 12 6 4.3056 -4.5357 1.5408 13 7 3.9745 -5.3499 0.3615 14 6 3.4828 -6.5972 0.4981 15 8 3.1678 -7.0085 1.5955 16 6 3.3255 -7.4740 -0.7019 17 8 3.7465 -7.1085 -1.7798 18 7 2.7212 -8.6731 -0.5859 19 6 2.5724 -9.5352 -1.7610 20 6 1.8577 -10.8268 -1.3588 21 1 2.3956 -11.2997 -0.5371 22 6 1.8125 -11.7800 -2.5559 23 7 1.0579 -12.9866 -2.1867 24 6 -0.3076 -12.6391 -1.7673 25 6 -0.2411 -11.6771 -0.5780 26 8 0.5222 -10.5249 -0.9455 27 6 4.1998 -4.7689 -0.9708 28 6 3.5196 -3.3914 -1.0172 29 1 -0.4850 0.8401 0.0004 30 1 3.8751 -0.6142 0.8482 31 1 3.8745 -0.7496 -0.9267 32 1 2.5449 -3.2947 1.4380 33 1 3.9495 -2.5151 2.2051 34 1 3.9427 -5.0309 2.4414 35 1 5.3861 -4.4059 1.6045 36 1 2.3847 -8.9653 0.2757 37 1 1.9860 -9.0170 -2.5198 38 1 3.5568 -9.7743 -2.1631 39 1 1.3224 -11.2870 -3.3955 40 1 2.8279 -12.0575 -2.8389 41 1 1.0448 -13.6513 -2.9458 42 1 -0.8315 -12.1597 -2.5942 43 1 -0.8397 -13.5440 -1.4741 44 1 -1.2498 -11.3719 -0.2999 45 1 0.2344 -12.1752 0.2668 46 1 5.2700 -4.6583 -1.1457 47 1 3.7667 -5.4184 -1.7314 48 1 2.4391 -3.5135 -0.9409 49 1 3.7644 -2.8974 -1.9575 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884725273.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:25 Heat of formation + Delta-G solvation = -76.424244 kcal Electronic energy + Delta-G solvation = -30234.447791 eV Core-core repulsion = 26004.631185 eV Total energy + Delta-G solvation = -4229.816606 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 11.28 seconds Orbital eigenvalues (eV) -40.85874 -39.95188 -38.67273 -37.57055 -35.66513 -35.01264 -34.30371 -32.28541 -32.00915 -30.70027 -28.82270 -28.28771 -26.29438 -25.47731 -24.10711 -23.18900 -22.70124 -21.62046 -21.12773 -20.36642 -19.27974 -17.78582 -17.11304 -17.05643 -16.97356 -16.72901 -16.12797 -15.80360 -15.40166 -15.18566 -14.91740 -14.57631 -14.49686 -14.39723 -14.32729 -14.27983 -14.08480 -13.66907 -13.38113 -12.97548 -12.74313 -12.44264 -12.40711 -12.26716 -11.97504 -11.75844 -11.53657 -11.30157 -11.13405 -11.05391 -10.85618 -10.60109 -10.44291 -10.31534 -10.21843 -9.97860 -9.55231 -9.46055 -9.10173 -9.04375 -8.62093 -8.52019 -7.27618 -6.12263 -4.12978 1.47322 2.32178 3.18105 3.26511 3.26882 3.34194 3.37095 3.43629 3.62357 4.28426 4.33241 4.37526 4.43111 4.51645 4.59391 4.72141 4.88357 4.89743 5.01588 5.13019 5.16882 5.20295 5.30749 5.39315 5.44093 5.51456 5.53056 5.64027 5.79452 5.87020 5.94249 6.02351 6.22885 6.29362 6.44479 6.57657 6.64988 6.65292 6.68787 6.74810 6.90242 6.99907 7.03275 7.40421 7.52553 7.74214 7.96606 8.01068 8.05887 8.41685 8.89726 9.49818 11.00627 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018080 B = 0.002209 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.265736 B =12670.165972 C =13297.861361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.153 3.847 10 N -0.535 5.535 11 C 0.049 3.951 12 C 0.112 3.888 13 N -0.571 5.571 14 C 0.505 3.495 15 O -0.533 6.533 16 C 0.512 3.488 17 O -0.511 6.511 18 N -0.696 5.696 19 C 0.127 3.873 20 C 0.080 3.920 21 H 0.077 0.923 22 C 0.028 3.972 23 N -0.688 5.688 24 C 0.017 3.983 25 C 0.062 3.938 26 O -0.376 6.376 27 C 0.078 3.922 28 C 0.047 3.953 29 H 0.264 0.736 30 H 0.032 0.968 31 H 0.027 0.973 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.416 0.584 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.047 0.953 40 H 0.091 0.909 41 H 0.349 0.651 42 H 0.042 0.958 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.131 0.869 48 H 0.048 0.952 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.811 -25.884 -3.827 26.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.592 4.592 8 H 0.092 0.908 9 C 0.026 3.974 10 N -0.259 5.259 11 C -0.080 4.080 12 C -0.010 4.010 13 N -0.304 5.304 14 C 0.287 3.713 15 O -0.411 6.411 16 C 0.294 3.706 17 O -0.388 6.388 18 N -0.349 5.349 19 C 0.003 3.997 20 C 0.021 3.979 21 H 0.095 0.905 22 C -0.102 4.102 23 N -0.320 5.320 24 C -0.113 4.113 25 C -0.015 4.015 26 O -0.295 6.295 27 C -0.044 4.044 28 C -0.082 4.082 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.253 0.747 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.065 0.935 40 H 0.110 0.890 41 H 0.168 0.832 42 H 0.061 0.939 43 H 0.106 0.894 44 H 0.119 0.881 45 H 0.079 0.921 46 H 0.090 0.910 47 H 0.148 0.852 48 H 0.066 0.934 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.476 -25.525 -3.399 26.326 hybrid contribution -1.193 0.820 -0.525 1.540 sum 4.283 -24.705 -3.924 25.379 Atomic orbital electron populations 1.69934 1.06401 1.27032 1.50239 1.24988 0.94709 0.99276 0.94129 0.86781 0.80376 0.83485 0.78649 1.20173 1.21324 1.18769 1.21689 0.90645 0.94684 1.52134 0.90825 1.20225 0.94671 0.85426 0.97079 1.62438 1.58540 1.03886 1.01016 1.22251 0.99114 0.93174 0.93500 1.21996 1.00185 0.91146 0.87643 1.48076 1.60071 1.12509 1.09707 1.19879 0.79491 0.83111 0.88808 1.90731 1.49432 1.73859 1.27040 1.20282 0.78672 0.82413 0.89244 1.90546 1.48282 1.71233 1.28735 1.45615 1.58476 1.17391 1.13466 1.21435 1.00611 0.89190 0.88492 1.22376 0.84494 0.94175 0.96816 0.90500 1.22499 0.99976 0.91163 0.96590 1.60509 1.14667 1.13265 1.43572 1.22658 0.89964 1.00125 0.98525 1.22689 0.96750 0.86292 0.95738 1.88086 1.23784 1.31327 1.86255 1.23103 1.01875 0.95845 0.83531 1.22418 0.98378 0.91934 0.95508 0.92653 0.95038 0.95527 0.93213 0.90169 0.89119 0.90714 0.74735 0.89893 0.89156 0.93478 0.89049 0.83232 0.93928 0.89428 0.88073 0.92076 0.91045 0.85205 0.93366 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 21.29 27.56 -169.99 -4.68 16.60 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.26 -6.09 6.42 56.52 0.36 -5.73 16 7 C -0.55 -15.32 8.32 -34.44 -0.29 -15.60 16 8 H 0.07 2.25 6.12 -52.48 -0.32 1.93 16 9 C 0.15 3.61 4.20 -4.97 -0.02 3.59 16 10 N -0.53 -10.98 4.83 -235.47 -1.14 -12.11 16 11 C 0.05 0.94 5.24 -3.71 -0.02 0.92 16 12 C 0.11 1.82 6.61 -3.60 -0.02 1.79 16 13 N -0.57 -9.50 3.00 -172.69 -0.52 -10.02 16 14 C 0.51 8.22 7.75 -11.59 -0.09 8.13 16 15 O -0.53 -9.39 15.96 5.49 0.09 -9.31 16 16 C 0.51 7.30 7.75 -11.59 -0.09 7.21 16 17 O -0.51 -7.85 13.19 5.49 0.07 -7.78 16 18 N -0.70 -7.91 5.50 -60.73 -0.33 -8.24 16 19 C 0.13 1.12 5.34 -4.04 -0.02 1.10 16 20 C 0.08 0.62 2.84 -26.68 -0.08 0.54 16 21 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 22 C 0.03 0.17 6.05 -3.71 -0.02 0.15 16 23 N -0.69 -4.02 6.92 -113.49 -0.79 -4.80 16 24 C 0.02 0.10 6.76 -3.71 -0.03 0.07 16 25 C 0.06 0.44 7.01 37.21 0.26 0.70 16 26 O -0.38 -3.60 10.42 -35.23 -0.37 -3.97 16 27 C 0.08 1.28 6.14 -3.36 -0.02 1.26 16 28 C 0.05 0.91 5.17 -3.47 -0.02 0.89 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.03 0.75 6.82 -51.93 -0.35 0.40 16 31 H 0.03 0.63 7.79 -51.93 -0.40 0.22 16 32 H 0.05 1.11 7.10 -51.93 -0.37 0.74 16 33 H 0.08 1.46 8.06 -51.93 -0.42 1.04 16 34 H 0.09 1.44 7.05 -51.93 -0.37 1.07 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.42 4.57 7.96 -40.82 -0.32 4.25 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.35 1.42 8.90 -39.29 -0.35 1.07 16 42 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.13 2.12 4.43 -54.27 -0.24 1.88 16 48 H 0.05 1.08 6.63 -51.93 -0.34 0.73 16 49 H 0.08 1.50 8.11 -51.93 -0.42 1.08 16 LS Contribution 383.44 15.07 5.78 5.78 Total: -1.00 -33.23 383.44 -9.40 -42.63 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -7.74 Total: 5.17 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: -0.55 Total: 12.70 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -2.00 Total: -61.83 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.21 Total: -21.05 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.68 Total: 16.60 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.23 -9.40 -42.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884725273.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.794 kcal (2) G-P(sol) polarization free energy of solvation -33.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.28 seconds