Wall clock time and date at job start Sat Apr 11 2020 06:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00374 * 2 1 4 4 H 1.48503 * 109.47185 * 270.00231 * 3 2 1 5 5 H 1.48500 * 109.47134 * 30.00159 * 3 2 1 6 6 H 1.48504 * 109.47376 * 150.00195 * 3 2 1 7 7 C 1.37881 * 119.99608 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00236 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99885 * 179.97438 * 7 2 1 10 10 N 1.46900 * 109.46820 * 175.67088 * 9 7 2 11 11 C 1.46894 * 111.00391 * 295.18174 * 10 9 7 12 12 C 1.53237 * 109.34322 * 187.25254 * 11 10 9 13 13 N 1.47080 * 108.52332 * 306.17750 * 12 11 10 14 14 C 1.34773 * 120.87838 * 231.18427 * 13 12 11 15 15 O 1.21356 * 120.00299 * 8.21244 * 14 13 12 16 16 C 1.49448 * 120.00114 * 188.20771 * 14 13 12 17 17 O 1.21357 * 119.99833 * 6.38732 * 16 14 13 18 18 N 1.34776 * 120.00539 * 186.10463 * 16 14 13 19 19 C 1.46501 * 120.00387 * 180.27800 * 18 16 14 20 20 C 1.53002 * 109.47030 * 180.02562 * 19 18 16 21 21 H 1.09000 * 109.50409 * 305.08420 * 20 19 18 22 22 C 1.53098 * 109.50092 * 184.99940 * 20 19 18 23 23 N 1.47019 * 109.25420 * 183.21583 * 22 20 19 24 24 C 1.47016 * 110.75375 * 58.61739 * 23 22 20 25 25 C 1.53103 * 109.25656 * 301.38662 * 24 23 22 26 26 O 1.43011 * 109.26076 * 56.84699 * 25 24 23 27 27 C 1.47081 * 118.23904 * 51.44991 * 13 12 11 28 28 C 1.46896 * 111.00035 * 59.48914 * 10 9 7 29 29 H 0.97004 * 119.99681 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46512 * 55.67972 * 9 7 2 31 31 H 1.09000 * 109.47375 * 295.67674 * 9 7 2 32 32 H 1.09004 * 109.49017 * 67.29864 * 11 10 9 33 33 H 1.08996 * 109.51965 * 307.22983 * 11 10 9 34 34 H 1.09001 * 109.63249 * 186.46022 * 12 11 10 35 35 H 1.09005 * 109.78504 * 65.97946 * 12 11 10 36 36 H 0.97001 * 119.99765 * 0.28174 * 18 16 14 37 37 H 1.08996 * 109.46948 * 300.00271 * 19 18 16 38 38 H 1.08993 * 109.46731 * 60.00083 * 19 18 16 39 39 H 1.08997 * 109.50823 * 303.14639 * 22 20 19 40 40 H 1.08999 * 109.50929 * 63.24331 * 22 20 19 41 41 H 1.00902 * 111.00064 * 182.39058 * 23 22 20 42 42 H 1.09001 * 109.50540 * 61.31676 * 24 23 22 43 43 H 1.08994 * 109.50767 * 181.44728 * 24 23 22 44 44 H 1.08995 * 109.50663 * 176.78257 * 25 24 23 45 45 H 1.09000 * 109.50416 * 296.86724 * 25 24 23 46 46 H 1.09004 * 109.62398 * 68.25580 * 27 13 12 47 47 H 1.08995 * 109.62622 * 188.83580 * 27 13 12 48 48 H 1.08998 * 109.49168 * 292.70184 * 28 10 9 49 49 H 1.09004 * 109.49401 * 52.75546 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1295 0.0005 9 6 3.5115 -1.1942 0.0000 10 7 4.0010 -2.5752 0.1052 11 6 3.6269 -3.1696 1.3954 12 6 4.3056 -4.5357 1.5408 13 7 3.9745 -5.3499 0.3615 14 6 3.4828 -6.5972 0.4981 15 8 3.1678 -7.0085 1.5955 16 6 3.3255 -7.4740 -0.7019 17 8 3.7465 -7.1085 -1.7798 18 7 2.7212 -8.6731 -0.5859 19 6 2.5724 -9.5352 -1.7610 20 6 1.8577 -10.8268 -1.3588 21 1 2.3956 -11.2997 -0.5371 22 6 1.8125 -11.7800 -2.5559 23 7 1.0579 -12.9866 -2.1867 24 6 -0.3076 -12.6391 -1.7673 25 6 -0.2411 -11.6771 -0.5780 26 8 0.5222 -10.5249 -0.9455 27 6 4.1998 -4.7689 -0.9708 28 6 3.5196 -3.3914 -1.0172 29 1 -0.4850 0.8401 0.0004 30 1 3.8751 -0.6142 0.8482 31 1 3.8745 -0.7496 -0.9267 32 1 2.5449 -3.2947 1.4380 33 1 3.9495 -2.5151 2.2051 34 1 3.9427 -5.0309 2.4414 35 1 5.3861 -4.4059 1.6045 36 1 2.3847 -8.9653 0.2757 37 1 1.9860 -9.0170 -2.5198 38 1 3.5568 -9.7743 -2.1631 39 1 1.3224 -11.2870 -3.3955 40 1 2.8279 -12.0575 -2.8389 41 1 1.0448 -13.6513 -2.9458 42 1 -0.8315 -12.1597 -2.5942 43 1 -0.8397 -13.5440 -1.4741 44 1 -1.2498 -11.3719 -0.2999 45 1 0.2344 -12.1752 0.2668 46 1 5.2700 -4.6583 -1.1457 47 1 3.7667 -5.4184 -1.7314 48 1 2.4391 -3.5135 -0.9409 49 1 3.7644 -2.8974 -1.9575 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884725273.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:05 Heat of formation + Delta-G solvation = -106.171892 kcal Electronic energy + Delta-G solvation = -30235.737746 eV Core-core repulsion = 26004.631185 eV Total energy + Delta-G solvation = -4231.106561 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 7.13 seconds Orbital eigenvalues (eV) -42.05838 -40.65357 -39.88787 -39.04138 -36.72373 -35.82224 -35.51252 -34.34031 -32.71258 -32.16234 -30.53887 -29.06150 -27.68276 -26.50270 -25.24847 -24.51804 -23.80279 -23.09290 -22.00273 -21.45671 -20.63770 -19.22026 -18.60126 -18.21045 -17.73209 -17.68831 -17.24126 -16.94835 -16.48646 -16.33593 -16.09332 -15.89105 -15.81188 -15.59783 -15.41833 -15.27877 -14.97937 -14.83743 -14.63464 -14.44701 -14.01179 -13.96241 -13.74047 -13.30746 -13.11548 -13.04126 -12.73898 -12.43974 -12.40263 -12.31960 -12.23197 -12.15629 -11.97716 -11.76223 -11.67056 -11.62459 -10.81296 -10.80404 -10.47972 -10.26384 -9.91381 -9.55941 -9.07266 -8.32928 -6.39385 0.25600 1.19576 1.36655 1.38062 1.49827 2.03657 2.33214 2.33423 2.62792 3.02154 3.06600 3.22339 3.24808 3.71962 3.83258 3.95482 3.99774 4.03590 4.04889 4.23177 4.25888 4.32998 4.38241 4.43954 4.50378 4.54439 4.57639 4.64774 4.73553 4.80142 4.82762 4.91421 4.96054 4.96644 5.04174 5.05643 5.12926 5.20026 5.31439 5.46630 5.76522 5.86637 6.02038 6.11234 6.17010 6.28731 6.30212 6.30771 6.58512 6.67339 6.83754 7.27757 8.83694 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018080 B = 0.002209 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.265736 B =12670.165972 C =13297.861361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.007 3.993 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.240 1.240 7 C -0.552 4.552 8 H 0.027 0.973 9 C 0.158 3.842 10 N -0.524 5.524 11 C 0.051 3.949 12 C 0.121 3.879 13 N -0.580 5.580 14 C 0.501 3.499 15 O -0.549 6.549 16 C 0.513 3.487 17 O -0.524 6.524 18 N -0.683 5.683 19 C 0.126 3.874 20 C 0.082 3.918 21 H 0.081 0.919 22 C 0.031 3.969 23 N -0.692 5.692 24 C 0.019 3.981 25 C 0.056 3.944 26 O -0.403 6.403 27 C 0.093 3.907 28 C 0.049 3.951 29 H 0.266 0.734 30 H 0.039 0.961 31 H 0.036 0.964 32 H 0.006 0.994 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.418 0.582 37 H 0.073 0.927 38 H 0.110 0.890 39 H 0.042 0.958 40 H 0.110 0.890 41 H 0.361 0.639 42 H 0.036 0.964 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.063 0.937 46 H 0.093 0.907 47 H 0.134 0.866 48 H 0.006 0.994 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.257 -26.651 -4.217 27.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.163 1.163 7 C -0.590 4.590 8 H 0.045 0.955 9 C 0.031 3.969 10 N -0.247 5.247 11 C -0.078 4.078 12 C -0.001 4.001 13 N -0.312 5.312 14 C 0.284 3.716 15 O -0.428 6.428 16 C 0.294 3.706 17 O -0.402 6.402 18 N -0.335 5.335 19 C 0.003 3.997 20 C 0.024 3.976 21 H 0.099 0.901 22 C -0.100 4.100 23 N -0.325 5.325 24 C -0.110 4.110 25 C -0.021 4.021 26 O -0.323 6.323 27 C -0.028 4.028 28 C -0.080 4.080 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.025 0.975 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.121 0.879 36 H 0.255 0.745 37 H 0.092 0.908 38 H 0.128 0.872 39 H 0.061 0.939 40 H 0.128 0.872 41 H 0.180 0.820 42 H 0.055 0.945 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.081 0.919 46 H 0.112 0.888 47 H 0.151 0.849 48 H 0.025 0.975 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.931 -26.352 -3.794 27.780 hybrid contribution -2.064 0.927 -0.380 2.295 sum 5.867 -25.426 -4.174 26.425 Atomic orbital electron populations 1.70102 1.08576 1.28230 1.52161 1.26011 0.95559 1.03759 0.93726 0.85601 0.79562 0.77769 0.79312 1.19080 1.21288 1.16312 1.21904 0.92943 0.92938 1.51245 0.95502 1.20129 0.91574 0.87609 0.97629 1.62488 1.57532 1.02827 1.01861 1.22273 0.96849 0.95417 0.93274 1.21946 1.01351 0.89058 0.87765 1.48190 1.60246 1.12914 1.09856 1.20280 0.78709 0.83227 0.89362 1.90716 1.49949 1.74268 1.27899 1.19927 0.79363 0.82977 0.88315 1.90528 1.49374 1.71620 1.28676 1.45652 1.56871 1.16573 1.14449 1.21632 1.01722 0.89131 0.87207 1.22396 0.83764 0.93730 0.97689 0.90108 1.22480 1.01066 0.90941 0.95466 1.60511 1.14550 1.13288 1.44182 1.22641 0.90172 1.00447 0.97746 1.22848 0.96806 0.86007 0.96420 1.88045 1.24724 1.32931 1.86580 1.23002 1.02666 0.93575 0.83607 1.22436 0.96208 0.93898 0.95495 0.92536 0.94287 0.94608 0.97537 0.89015 0.88790 0.87892 0.74487 0.90846 0.87213 0.93923 0.87231 0.81964 0.94530 0.87737 0.87513 0.91908 0.88834 0.84910 0.97535 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.06 13.96 21.45 0.30 -59.76 16 2 C 0.01 0.42 5.47 84.66 0.46 0.88 16 3 Si 0.95 43.60 27.56 68.60 1.89 45.49 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.24 -9.99 6.42 99.48 0.64 -9.35 16 7 C -0.55 -31.47 8.32 25.60 0.21 -31.26 16 8 H 0.03 1.75 6.12 -2.91 -0.02 1.73 16 9 C 0.16 7.36 4.20 85.56 0.36 7.72 16 10 N -0.52 -21.20 4.83 -898.90 -4.34 -25.54 16 11 C 0.05 1.96 5.24 86.38 0.45 2.42 16 12 C 0.12 3.77 6.61 86.35 0.57 4.34 16 13 N -0.58 -18.89 3.00 -818.62 -2.46 -21.35 16 14 C 0.50 16.11 7.75 87.27 0.68 16.79 16 15 O -0.55 -19.25 15.96 -3.27 -0.05 -19.30 16 16 C 0.51 14.31 7.75 87.27 0.68 14.98 16 17 O -0.52 -15.56 13.19 -3.27 -0.04 -15.60 16 18 N -0.68 -15.05 5.50 -464.41 -2.55 -17.60 16 19 C 0.13 2.10 5.34 86.38 0.46 2.56 16 20 C 0.08 1.18 2.84 30.63 0.09 1.27 16 21 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 22 C 0.03 0.32 6.05 86.31 0.52 0.84 16 23 N -0.69 -6.87 6.92 -512.98 -3.55 -10.42 16 24 C 0.02 0.20 6.76 86.32 0.58 0.78 16 25 C 0.06 0.75 7.01 72.02 0.50 1.25 16 26 O -0.40 -7.58 10.42 -148.98 -1.55 -9.13 16 27 C 0.09 2.94 6.14 86.50 0.53 3.48 16 28 C 0.05 1.91 5.17 86.54 0.45 2.36 16 29 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 30 H 0.04 1.78 6.82 -2.39 -0.02 1.76 16 31 H 0.04 1.62 7.79 -2.39 -0.02 1.60 16 32 H 0.01 0.29 7.10 -2.38 -0.02 0.28 16 33 H 0.09 3.27 8.06 -2.39 -0.02 3.25 16 34 H 0.09 2.90 7.05 -2.39 -0.02 2.88 16 35 H 0.10 2.70 8.14 -2.38 -0.02 2.68 16 36 H 0.42 9.00 7.96 -92.71 -0.74 8.26 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.36 2.24 8.90 -89.69 -0.80 1.44 16 42 H 0.04 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 47 H 0.13 4.25 4.43 -39.39 -0.17 4.07 16 48 H 0.01 0.30 6.63 -2.39 -0.02 0.28 16 49 H 0.09 3.24 8.11 -2.39 -0.02 3.22 16 Total: -1.00 -73.70 383.44 -6.59 -80.30 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: -0.78 Total: 24.52 kcal Atomic # 6 Polarization: 21.86 SS G_CDS: 6.55 Total: 28.41 kcal Atomic # 7 Polarization: -122.07 SS G_CDS: -12.60 Total: -134.68 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -1.65 Total: -44.03 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.89 Total: 45.49 kcal Total: -73.70 -6.59 -80.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884725273.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.876 kcal (2) G-P(sol) polarization free energy of solvation -73.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.13 seconds