Wall clock time and date at job start Sat Apr 11 2020 06:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 115.56075 * 2 1 4 4 C 1.52998 * 117.50094 * 214.31144 * 2 1 3 5 5 H 1.09004 * 117.51715 * 145.02407 * 4 2 1 6 6 C 1.50699 * 117.49729 * 0.02562 * 4 2 1 7 7 O 1.21286 * 119.99820 * 295.48839 * 6 4 2 8 8 N 1.34774 * 120.00385 * 115.49454 * 6 4 2 9 9 C 1.46501 * 120.00205 * 179.97438 * 8 6 4 10 10 H 1.09007 * 115.51530 * 9.58416 * 9 8 6 11 11 C 1.52994 * 117.44418 * 224.23480 * 9 8 6 12 12 H 1.09004 * 119.54083 * 4.12473 * 11 9 8 13 13 C 1.57692 * 116.11162 * 161.63527 * 11 9 8 14 14 N 1.48146 * 104.67198 * 87.30964 * 13 11 9 15 15 C 1.36944 * 127.83755 * 139.77629 * 14 13 11 16 16 H 1.08000 * 119.99841 * 345.17976 * 15 14 13 17 17 C 1.38804 * 120.00029 * 165.18645 * 15 14 13 18 18 N 1.31620 * 120.00169 * 350.44942 * 17 15 14 19 19 Si 1.86802 * 120.00155 * 170.44722 * 17 15 14 20 20 H 1.48509 * 109.46971 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47338 * 119.99713 * 19 17 15 22 22 H 1.48498 * 109.47449 * 240.00389 * 19 17 15 23 23 C 1.48146 * 104.32761 * 319.77847 * 14 13 11 24 24 C 1.53001 * 117.44337 * 154.99611 * 9 8 6 25 25 H 1.08997 * 119.53709 * 355.88027 * 24 9 8 26 26 C 1.52995 * 60.00053 * 252.50829 * 4 2 1 27 27 H 1.08996 * 117.50216 * 107.48940 * 26 4 2 28 28 C 1.50706 * 117.49652 * 252.48459 * 26 4 2 29 29 C 1.38229 * 120.00000 * 8.47960 * 28 26 4 30 30 C 1.38236 * 120.00026 * 179.76422 * 29 28 26 31 31 C 1.38241 * 119.99616 * 0.50471 * 30 29 28 32 32 C 1.38235 * 119.99918 * 359.74251 * 31 30 29 33 33 C 1.38232 * 119.99645 * 188.74341 * 28 26 4 34 34 H 1.09002 * 109.47121 * 268.88887 * 1 2 3 35 35 H 1.08996 * 109.47130 * 28.88982 * 1 2 3 36 36 H 1.08997 * 109.46891 * 148.88835 * 1 2 3 37 37 H 1.09000 * 109.47150 * 205.69035 * 3 2 1 38 38 H 1.08999 * 109.47017 * 325.68682 * 3 2 1 39 39 H 1.08999 * 109.47321 * 85.68833 * 3 2 1 40 40 H 0.96994 * 119.99902 * 359.97438 * 8 6 4 41 41 H 1.09005 * 110.92027 * 328.23696 * 13 11 9 42 42 H 1.08993 * 109.94149 * 205.89166 * 13 11 9 43 43 H 0.97000 * 119.99867 * 179.97438 * 18 17 15 44 44 H 1.09000 * 110.40485 * 280.80013 * 23 14 13 45 45 H 1.08996 * 110.41184 * 158.36806 * 23 14 13 46 46 H 1.07996 * 120.00273 * 359.97438 * 29 28 26 47 47 H 1.07997 * 120.00622 * 180.21986 * 30 29 28 48 48 H 1.08003 * 119.99940 * 179.72711 * 31 30 29 49 49 H 1.07999 * 119.99718 * 179.97438 * 32 31 30 50 50 H 1.07996 * 120.00403 * 0.02562 * 33 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2365 -1.1209 -0.7650 5 1 3.1716 -0.8754 -1.2683 6 6 1.3721 -2.1402 -1.4613 7 8 0.6536 -2.8708 -0.8124 8 7 1.3974 -2.2401 -2.8051 9 6 0.5575 -3.2314 -3.4820 10 1 -0.1750 -3.7353 -2.8513 11 6 1.1968 -4.0464 -4.6079 12 1 2.2571 -3.9205 -4.8273 13 6 0.4536 -5.3781 -5.0090 14 7 -0.5449 -4.9605 -6.0206 15 6 -0.8996 -5.6141 -7.1705 16 1 -0.2792 -6.4119 -7.5515 17 6 -2.0563 -5.2512 -7.8465 18 7 -2.9081 -4.4152 -7.2916 19 14 -2.4041 -5.9492 -9.5440 20 1 -1.2997 -6.8594 -9.9407 21 1 -3.6820 -6.7051 -9.5161 22 1 -2.5071 -4.8385 -10.5244 23 6 -1.0727 -3.6755 -5.5060 24 6 0.1629 -2.9485 -4.9329 25 1 0.4528 -2.0045 -5.3943 26 6 2.2365 -1.1209 0.7650 27 1 1.6113 -1.8584 1.2683 28 6 3.5295 -0.7816 1.4608 29 6 4.6064 -0.3164 0.7296 30 6 5.7909 -0.0005 1.3684 31 6 5.9017 -0.1597 2.7372 32 6 4.8264 -0.6297 3.4676 33 6 3.6403 -0.9406 2.8294 34 1 -0.3633 -0.0199 1.0275 35 1 -0.3633 0.8997 -0.4965 36 1 -0.3633 -0.8798 -0.5310 37 1 3.1824 1.3085 -0.4455 38 1 1.5812 2.0743 -0.5793 39 1 2.2772 1.7415 1.0247 40 1 1.9717 -1.6557 -3.3241 41 1 -0.0426 -5.8221 -4.1459 42 1 1.1624 -6.0831 -5.4431 43 1 -3.7162 -4.1613 -7.7642 44 1 -1.8072 -3.8535 -4.7206 45 1 -1.5140 -3.0943 -6.3157 46 1 4.5214 -0.1966 -0.3403 47 1 6.6312 0.3663 0.7977 48 1 6.8286 0.0830 3.2357 49 1 4.9131 -0.7544 4.5369 50 1 2.8004 -1.3085 3.4001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000959921757.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:53 Heat of formation + Delta-G solvation = 72.583394 kcal Electronic energy + Delta-G solvation = -28663.718980 eV Core-core repulsion = 24851.213093 eV Total energy + Delta-G solvation = -3812.505887 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 11.77 seconds Orbital eigenvalues (eV) -40.89977 -39.45203 -38.47598 -37.09821 -34.45147 -32.62297 -31.62877 -31.22044 -30.36202 -29.22816 -27.64941 -27.02586 -25.89558 -24.71304 -22.88826 -22.41264 -21.17146 -20.47845 -19.83786 -19.32259 -19.14848 -17.61262 -16.87237 -16.47377 -16.26048 -15.52507 -15.27287 -15.15922 -14.71938 -14.48472 -14.24201 -13.89929 -13.67805 -13.58475 -13.25817 -13.18855 -12.83981 -12.74725 -12.65563 -12.57954 -12.26591 -12.23560 -11.74373 -11.50854 -11.45902 -11.30915 -11.14031 -10.99615 -10.85712 -10.64646 -10.35118 -10.22439 -10.19180 -10.12964 -9.77150 -9.71327 -9.21976 -9.20865 -8.79162 -8.75148 -8.31719 -6.88811 -5.80791 -3.14794 1.00246 1.10466 2.41964 3.04479 3.32538 3.37367 3.43275 3.45800 3.78096 4.20281 4.32758 4.36848 4.44581 4.48571 4.59169 4.69089 4.71635 4.82243 4.88649 4.96243 5.17162 5.19202 5.28870 5.29446 5.36698 5.39868 5.41061 5.56914 5.63002 5.65341 5.70297 5.73332 5.73534 5.74350 5.80448 5.85956 5.89903 6.10765 6.16275 6.19755 6.21829 6.25394 6.35908 6.51399 6.68345 6.69361 6.81276 6.88188 7.34155 7.52097 7.59228 7.70817 8.19110 8.29223 9.09795 9.72555 10.49213 11.33523 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026755 B = 0.001939 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.295659 B =14440.215393 C =14819.390318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.078 4.078 3 C -0.118 4.118 4 C -0.180 4.180 5 H 0.123 0.877 6 C 0.548 3.452 7 O -0.536 6.536 8 N -0.694 5.694 9 C 0.094 3.906 10 H 0.131 0.869 11 C -0.186 4.186 12 H 0.106 0.894 13 C 0.158 3.842 14 N -0.593 5.593 15 C -0.226 4.226 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.915 5.915 19 Si 0.913 3.087 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.185 3.815 24 C -0.179 4.179 25 H 0.101 0.899 26 C -0.079 4.079 27 H 0.127 0.873 28 C -0.044 4.044 29 C -0.119 4.119 30 C -0.118 4.118 31 C -0.126 4.126 32 C -0.118 4.118 33 C -0.111 4.111 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.399 0.601 41 H 0.030 0.970 42 H 0.050 0.950 43 H 0.254 0.746 44 H 0.026 0.974 45 H 0.092 0.908 46 H 0.122 0.878 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.067 13.887 19.168 28.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.079 4.079 3 C -0.175 4.175 4 C -0.201 4.201 5 H 0.141 0.859 6 C 0.334 3.666 7 O -0.413 6.413 8 N -0.341 5.341 9 C -0.012 4.012 10 H 0.149 0.851 11 C -0.207 4.207 12 H 0.124 0.876 13 C 0.031 3.969 14 N -0.316 5.316 15 C -0.354 4.354 16 H 0.096 0.904 17 C -0.204 4.204 18 N -0.561 5.561 19 Si 0.743 3.257 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.216 1.216 23 C 0.059 3.941 24 C -0.201 4.201 25 H 0.119 0.881 26 C -0.098 4.098 27 H 0.145 0.855 28 C -0.044 4.044 29 C -0.137 4.137 30 C -0.136 4.136 31 C -0.145 4.145 32 C -0.136 4.136 33 C -0.129 4.129 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.232 0.768 41 H 0.048 0.952 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.044 0.956 45 H 0.110 0.890 46 H 0.140 0.860 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.140 0.860 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 15.338 13.312 19.415 28.096 hybrid contribution 0.333 -0.003 -1.267 1.310 sum 15.672 13.308 18.147 27.423 Atomic orbital electron populations 1.21524 0.90927 1.03232 1.02757 1.21655 0.95421 0.90503 1.00302 1.21467 1.00170 0.93407 1.02423 1.22711 1.01665 1.00784 0.94933 0.85931 1.19441 0.82034 0.83145 0.81965 1.90701 1.41285 1.44115 1.65218 1.45322 1.44781 1.37780 1.06226 1.21895 0.96574 0.93504 0.89207 0.85127 1.25089 0.97370 0.96271 1.01982 0.87601 1.21691 0.91401 0.91567 0.92282 1.45143 1.44088 1.20758 1.21656 1.19041 1.04063 1.14742 0.97536 0.90429 1.24895 0.95676 1.00247 0.99555 1.69906 1.11456 1.37728 1.37032 0.86034 0.77813 0.78129 0.83697 1.20358 1.21672 1.21628 1.21078 0.89301 0.86639 0.97091 1.24632 1.01256 0.99284 0.94886 0.88128 1.21281 0.96186 1.01599 0.90725 0.85481 1.19091 0.93472 0.98392 0.93493 1.21082 0.92959 0.99751 0.99885 1.21124 0.97538 1.00102 0.94795 1.21150 0.98762 1.00201 0.94341 1.21134 0.93228 0.99304 0.99901 1.20976 0.97982 1.00143 0.93767 0.91647 0.91773 0.90918 0.91971 0.91689 0.91646 0.76775 0.95186 0.93135 0.93575 0.95640 0.88974 0.86008 0.86092 0.86228 0.86045 0.85889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 9.72 37.16 0.36 -0.95 16 2 C -0.08 -0.73 2.70 -154.51 -0.42 -1.15 16 3 C -0.12 -0.87 8.62 37.16 0.32 -0.55 16 4 C -0.18 -1.86 5.17 -91.78 -0.47 -2.33 16 5 H 0.12 1.01 6.08 -51.93 -0.32 0.70 16 6 C 0.55 7.64 6.31 -10.99 -0.07 7.57 16 7 O -0.54 -9.47 14.73 5.55 0.08 -9.39 16 8 N -0.69 -9.36 5.56 -53.81 -0.30 -9.66 16 9 C 0.09 1.59 5.92 -67.93 -0.40 1.19 16 10 H 0.13 2.53 7.40 -51.93 -0.38 2.15 16 11 C -0.19 -3.32 7.34 -87.39 -0.64 -3.96 16 12 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 13 C 0.16 3.36 7.10 -0.57 0.00 3.36 16 14 N -0.59 -15.26 3.38 -166.74 -0.56 -15.83 16 15 C -0.23 -6.29 10.35 -15.06 -0.16 -6.45 16 16 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 17 C -0.01 -0.19 5.40 -17.43 -0.09 -0.28 16 18 N -0.91 -26.79 10.84 55.49 0.60 -26.18 16 19 Si 0.91 21.90 29.56 -169.99 -5.03 16.88 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 C 0.18 4.46 5.71 -2.41 -0.01 4.44 16 24 C -0.18 -3.37 6.98 -89.22 -0.62 -4.00 16 25 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 26 C -0.08 -0.81 5.27 -91.77 -0.48 -1.29 16 27 H 0.13 1.49 7.68 -51.93 -0.40 1.09 16 28 C -0.04 -0.41 5.04 -104.62 -0.53 -0.94 16 29 C -0.12 -0.98 7.78 -39.59 -0.31 -1.29 16 30 C -0.12 -0.88 10.05 -39.58 -0.40 -1.27 16 31 C -0.13 -0.91 10.05 -39.58 -0.40 -1.31 16 32 C -0.12 -0.89 10.05 -39.58 -0.40 -1.28 16 33 C -0.11 -0.95 9.74 -39.59 -0.39 -1.33 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.58 7.85 -51.93 -0.41 0.17 16 36 H 0.07 0.95 5.57 -51.93 -0.29 0.66 16 37 H 0.06 0.42 5.93 -51.93 -0.31 0.11 16 38 H 0.06 0.44 7.88 -51.93 -0.41 0.03 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.40 4.25 8.83 -40.82 -0.36 3.89 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.09 2.46 6.47 -51.93 -0.34 2.13 16 46 H 0.12 0.86 5.19 -52.49 -0.27 0.59 16 47 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 48 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 49 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 50 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 398.95 15.07 6.01 6.01 Total: -1.00 -32.13 398.95 -11.98 -44.11 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -7.68 Total: 5.89 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -5.11 Total: -11.83 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -0.26 Total: -51.67 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.08 Total: -9.39 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.13 -11.98 -44.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000959921757.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.695 kcal (2) G-P(sol) polarization free energy of solvation -32.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.77 seconds