Wall clock time and date at job start Sat Apr 11 2020 06:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 115.56075 * 2 1 4 4 C 1.52998 * 117.50094 * 214.31144 * 2 1 3 5 5 H 1.09004 * 117.51715 * 145.02407 * 4 2 1 6 6 C 1.50699 * 117.49729 * 0.02562 * 4 2 1 7 7 O 1.21286 * 119.99820 * 295.48839 * 6 4 2 8 8 N 1.34774 * 120.00385 * 115.49454 * 6 4 2 9 9 C 1.46501 * 120.00205 * 179.97438 * 8 6 4 10 10 H 1.09007 * 115.51530 * 9.58416 * 9 8 6 11 11 C 1.52994 * 117.44418 * 224.23480 * 9 8 6 12 12 H 1.09004 * 119.54083 * 4.12473 * 11 9 8 13 13 C 1.57692 * 116.11162 * 161.63527 * 11 9 8 14 14 N 1.48146 * 104.67198 * 87.30964 * 13 11 9 15 15 C 1.36944 * 127.83755 * 139.77629 * 14 13 11 16 16 H 1.08000 * 119.99841 * 345.17976 * 15 14 13 17 17 C 1.38804 * 120.00029 * 165.18645 * 15 14 13 18 18 N 1.31620 * 120.00169 * 350.44942 * 17 15 14 19 19 Si 1.86802 * 120.00155 * 170.44722 * 17 15 14 20 20 H 1.48509 * 109.46971 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47338 * 119.99713 * 19 17 15 22 22 H 1.48498 * 109.47449 * 240.00389 * 19 17 15 23 23 C 1.48146 * 104.32761 * 319.77847 * 14 13 11 24 24 C 1.53001 * 117.44337 * 154.99611 * 9 8 6 25 25 H 1.08997 * 119.53709 * 355.88027 * 24 9 8 26 26 C 1.52995 * 60.00053 * 252.50829 * 4 2 1 27 27 H 1.08996 * 117.50216 * 107.48940 * 26 4 2 28 28 C 1.50706 * 117.49652 * 252.48459 * 26 4 2 29 29 C 1.38229 * 120.00000 * 8.47960 * 28 26 4 30 30 C 1.38236 * 120.00026 * 179.76422 * 29 28 26 31 31 C 1.38241 * 119.99616 * 0.50471 * 30 29 28 32 32 C 1.38235 * 119.99918 * 359.74251 * 31 30 29 33 33 C 1.38232 * 119.99645 * 188.74341 * 28 26 4 34 34 H 1.09002 * 109.47121 * 268.88887 * 1 2 3 35 35 H 1.08996 * 109.47130 * 28.88982 * 1 2 3 36 36 H 1.08997 * 109.46891 * 148.88835 * 1 2 3 37 37 H 1.09000 * 109.47150 * 205.69035 * 3 2 1 38 38 H 1.08999 * 109.47017 * 325.68682 * 3 2 1 39 39 H 1.08999 * 109.47321 * 85.68833 * 3 2 1 40 40 H 0.96994 * 119.99902 * 359.97438 * 8 6 4 41 41 H 1.09005 * 110.92027 * 328.23696 * 13 11 9 42 42 H 1.08993 * 109.94149 * 205.89166 * 13 11 9 43 43 H 0.97000 * 119.99867 * 179.97438 * 18 17 15 44 44 H 1.09000 * 110.40485 * 280.80013 * 23 14 13 45 45 H 1.08996 * 110.41184 * 158.36806 * 23 14 13 46 46 H 1.07996 * 120.00273 * 359.97438 * 29 28 26 47 47 H 1.07997 * 120.00622 * 180.21986 * 30 29 28 48 48 H 1.08003 * 119.99940 * 179.72711 * 31 30 29 49 49 H 1.07999 * 119.99718 * 179.97438 * 32 31 30 50 50 H 1.07996 * 120.00403 * 0.02562 * 33 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2365 -1.1209 -0.7650 5 1 3.1716 -0.8754 -1.2683 6 6 1.3721 -2.1402 -1.4613 7 8 0.6536 -2.8708 -0.8124 8 7 1.3974 -2.2401 -2.8051 9 6 0.5575 -3.2314 -3.4820 10 1 -0.1750 -3.7353 -2.8513 11 6 1.1968 -4.0464 -4.6079 12 1 2.2571 -3.9205 -4.8273 13 6 0.4536 -5.3781 -5.0090 14 7 -0.5449 -4.9605 -6.0206 15 6 -0.8996 -5.6141 -7.1705 16 1 -0.2792 -6.4119 -7.5515 17 6 -2.0563 -5.2512 -7.8465 18 7 -2.9081 -4.4152 -7.2916 19 14 -2.4041 -5.9492 -9.5440 20 1 -1.2997 -6.8594 -9.9407 21 1 -3.6820 -6.7051 -9.5161 22 1 -2.5071 -4.8385 -10.5244 23 6 -1.0727 -3.6755 -5.5060 24 6 0.1629 -2.9485 -4.9329 25 1 0.4528 -2.0045 -5.3943 26 6 2.2365 -1.1209 0.7650 27 1 1.6113 -1.8584 1.2683 28 6 3.5295 -0.7816 1.4608 29 6 4.6064 -0.3164 0.7296 30 6 5.7909 -0.0005 1.3684 31 6 5.9017 -0.1597 2.7372 32 6 4.8264 -0.6297 3.4676 33 6 3.6403 -0.9406 2.8294 34 1 -0.3633 -0.0199 1.0275 35 1 -0.3633 0.8997 -0.4965 36 1 -0.3633 -0.8798 -0.5310 37 1 3.1824 1.3085 -0.4455 38 1 1.5812 2.0743 -0.5793 39 1 2.2772 1.7415 1.0247 40 1 1.9717 -1.6557 -3.3241 41 1 -0.0426 -5.8221 -4.1459 42 1 1.1624 -6.0831 -5.4431 43 1 -3.7162 -4.1613 -7.7642 44 1 -1.8072 -3.8535 -4.7206 45 1 -1.5140 -3.0943 -6.3157 46 1 4.5214 -0.1966 -0.3403 47 1 6.6312 0.3663 0.7977 48 1 6.8286 0.0830 3.2357 49 1 4.9131 -0.7544 4.5369 50 1 2.8004 -1.3085 3.4001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000959921757.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:50 Heat of formation + Delta-G solvation = 55.422593 kcal Electronic energy + Delta-G solvation = -28664.463128 eV Core-core repulsion = 24851.213093 eV Total energy + Delta-G solvation = -3813.250035 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 2.73 seconds Orbital eigenvalues (eV) -41.80970 -40.58656 -39.67377 -38.04136 -36.08214 -34.31774 -32.26585 -32.16534 -31.77391 -30.01358 -28.82124 -28.36457 -27.70237 -25.76734 -23.76834 -23.27926 -22.53440 -21.98109 -20.95470 -20.74891 -20.03659 -18.86617 -18.45093 -17.62044 -17.22769 -16.75013 -16.34696 -16.13799 -15.96142 -15.56117 -15.31469 -14.97595 -14.91423 -14.68684 -14.58450 -14.21789 -13.96688 -13.79005 -13.51311 -13.38853 -13.35042 -13.34017 -13.14758 -12.96271 -12.89218 -12.75488 -12.40945 -12.08718 -11.99378 -11.88839 -11.87995 -11.77172 -11.68953 -11.36936 -11.14723 -10.90569 -10.77172 -10.70379 -9.76518 -9.71261 -9.41413 -8.95453 -7.93282 -5.30195 0.41670 0.54707 1.35440 1.46515 1.47070 1.58484 1.89529 2.47101 2.59059 2.85063 3.09636 3.25896 3.40699 3.56581 3.60212 3.69035 3.81529 3.90204 3.95078 3.99320 4.05974 4.11050 4.17884 4.28073 4.28615 4.35029 4.49825 4.58029 4.62014 4.71401 4.74386 4.80770 4.87066 4.93566 4.95586 5.00271 5.00362 5.05481 5.14428 5.20389 5.22848 5.25398 5.39013 5.40542 5.43675 5.52631 5.62932 5.63113 5.67896 5.74490 6.14518 6.15301 6.50799 6.98421 7.20169 7.65176 8.43416 9.20721 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026755 B = 0.001939 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.295659 B =14440.215393 C =14819.390318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.068 4.068 3 C -0.113 4.113 4 C -0.177 4.177 5 H 0.153 0.847 6 C 0.545 3.455 7 O -0.579 6.579 8 N -0.680 5.680 9 C 0.114 3.886 10 H 0.102 0.898 11 C -0.165 4.165 12 H 0.141 0.859 13 C 0.149 3.851 14 N -0.617 5.617 15 C -0.240 4.240 16 H 0.084 0.916 17 C -0.064 4.064 18 N -0.948 5.948 19 Si 0.983 3.017 20 H -0.263 1.263 21 H -0.293 1.293 22 H -0.289 1.289 23 C 0.189 3.811 24 C -0.178 4.178 25 H 0.126 0.874 26 C -0.081 4.081 27 H 0.102 0.898 28 C -0.057 4.057 29 C -0.125 4.125 30 C -0.122 4.122 31 C -0.131 4.131 32 C -0.124 4.124 33 C -0.128 4.128 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.040 0.960 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.418 0.582 41 H 0.020 0.980 42 H 0.062 0.938 43 H 0.250 0.750 44 H -0.006 1.006 45 H 0.061 0.939 46 H 0.135 0.865 47 H 0.142 0.858 48 H 0.140 0.860 49 H 0.138 0.862 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.437 15.504 19.128 31.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.068 4.068 3 C -0.169 4.169 4 C -0.198 4.198 5 H 0.170 0.830 6 C 0.334 3.666 7 O -0.459 6.459 8 N -0.329 5.329 9 C 0.007 3.993 10 H 0.120 0.880 11 C -0.186 4.186 12 H 0.159 0.841 13 C 0.023 3.977 14 N -0.341 5.341 15 C -0.368 4.368 16 H 0.101 0.899 17 C -0.258 4.258 18 N -0.596 5.596 19 Si 0.811 3.189 20 H -0.188 1.188 21 H -0.220 1.220 22 H -0.215 1.215 23 C 0.063 3.937 24 C -0.199 4.199 25 H 0.144 0.856 26 C -0.100 4.100 27 H 0.120 0.880 28 C -0.057 4.057 29 C -0.142 4.142 30 C -0.140 4.140 31 C -0.149 4.149 32 C -0.142 4.142 33 C -0.146 4.146 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.059 0.941 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.255 0.745 41 H 0.037 0.963 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.012 0.988 45 H 0.079 0.921 46 H 0.153 0.847 47 H 0.160 0.840 48 H 0.158 0.842 49 H 0.156 0.844 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 18.762 14.946 19.386 30.842 hybrid contribution -0.745 -0.559 -1.115 1.453 sum 18.017 14.388 18.271 29.419 Atomic orbital electron populations 1.21518 0.92055 1.02347 1.02663 1.21724 0.94649 0.91414 0.99052 1.21468 1.00777 0.91813 1.02870 1.22724 1.02104 1.00059 0.94866 0.82981 1.20096 0.81627 0.83118 0.81766 1.90691 1.43141 1.45963 1.66099 1.45120 1.44308 1.37180 1.06264 1.21398 0.96196 0.93647 0.88089 0.88016 1.25002 0.98376 0.93471 1.01772 0.84138 1.21824 0.91009 0.93796 0.91106 1.45440 1.44974 1.21568 1.22081 1.19438 1.04207 1.14864 0.98319 0.89861 1.25777 0.95649 1.01027 1.03342 1.70107 1.11807 1.39249 1.38464 0.84954 0.77596 0.77446 0.78941 1.18754 1.22017 1.21538 1.20807 0.91022 0.86657 0.95232 1.24305 0.98981 1.00180 0.96417 0.85599 1.21176 0.96821 1.01562 0.90454 0.87965 1.19063 0.93266 0.99604 0.93757 1.21244 0.92843 0.99622 1.00528 1.21431 0.97861 0.99546 0.95123 1.21484 0.99382 0.99404 0.94583 1.21385 0.92934 0.98976 1.00917 1.21134 0.98706 1.00787 0.93946 0.91393 0.90343 0.94056 0.90622 0.90759 0.91500 0.74478 0.96253 0.91930 0.94061 0.98825 0.92078 0.84728 0.83987 0.84170 0.84450 0.85950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.72 71.98 0.70 -1.93 16 2 C -0.07 -1.17 2.70 -52.18 -0.14 -1.31 16 3 C -0.11 -1.35 8.62 71.98 0.62 -0.73 16 4 C -0.18 -3.35 5.17 -11.54 -0.06 -3.40 16 5 H 0.15 1.95 6.08 -2.38 -0.01 1.94 16 6 C 0.55 14.86 6.31 87.66 0.55 15.41 16 7 O -0.58 -21.11 14.73 -3.05 -0.04 -21.16 16 8 N -0.68 -17.13 5.56 -442.53 -2.46 -19.60 16 9 C 0.11 3.80 5.92 44.99 0.27 4.07 16 10 H 0.10 4.10 7.40 -2.38 -0.02 4.08 16 11 C -0.17 -5.62 7.34 -8.70 -0.06 -5.69 16 12 H 0.14 3.90 8.14 -2.39 -0.02 3.89 16 13 C 0.15 6.35 7.10 87.72 0.62 6.97 16 14 N -0.62 -32.43 3.38 -681.43 -2.31 -34.73 16 15 C -0.24 -13.55 10.35 84.03 0.87 -12.68 16 16 H 0.08 4.48 7.85 -2.91 -0.02 4.46 16 17 C -0.06 -3.68 5.40 84.86 0.46 -3.23 16 18 N -0.95 -57.56 10.84 21.65 0.23 -57.32 16 19 Si 0.98 45.61 29.56 68.60 2.03 47.64 16 20 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 22 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 23 C 0.19 9.47 5.71 86.53 0.49 9.96 16 24 C -0.18 -6.59 6.98 -9.89 -0.07 -6.66 16 25 H 0.13 4.06 8.14 -2.39 -0.02 4.04 16 26 C -0.08 -1.61 5.27 -11.54 -0.06 -1.67 16 27 H 0.10 2.53 7.68 -2.39 -0.02 2.51 16 28 C -0.06 -0.97 5.04 -19.87 -0.10 -1.07 16 29 C -0.12 -1.71 7.78 22.27 0.17 -1.53 16 30 C -0.12 -1.43 10.05 22.27 0.22 -1.21 16 31 C -0.13 -1.53 10.05 22.27 0.22 -1.31 16 32 C -0.12 -1.65 10.05 22.27 0.22 -1.43 16 33 C -0.13 -2.09 9.74 22.27 0.22 -1.87 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.08 1.34 7.85 -2.39 -0.02 1.32 16 36 H 0.04 1.11 5.57 -2.39 -0.01 1.10 16 37 H 0.07 0.72 5.93 -2.39 -0.01 0.71 16 38 H 0.07 0.78 7.88 -2.39 -0.02 0.76 16 39 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.42 7.47 8.83 -92.71 -0.82 6.65 16 41 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 43 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 44 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 45 H 0.06 3.42 6.47 -2.39 -0.02 3.41 16 46 H 0.14 1.39 5.19 -2.91 -0.02 1.38 16 47 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16 48 H 0.14 1.00 8.06 -2.91 -0.02 0.98 16 49 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 50 H 0.12 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -73.17 398.95 2.74 -70.44 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.13 Total: 24.03 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: 5.15 Total: -9.29 kcal Atomic # 7 Polarization: -107.12 SS G_CDS: -4.53 Total: -111.65 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.04 Total: -21.16 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -73.17 2.74 -70.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000959921757.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.860 kcal (2) G-P(sol) polarization free energy of solvation -73.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.73 seconds