Wall clock time and date at job start Sat Apr 11 2020 06:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38264 * 119.99513 * 2 1 4 4 C 1.38216 * 119.99514 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99934 * 359.74160 * 4 3 2 6 6 C 1.38212 * 119.99915 * 0.51133 * 5 4 3 7 7 C 1.50704 * 119.99741 * 179.76208 * 6 5 4 8 8 C 1.50701 * 115.54632 * 149.98664 * 7 6 5 9 9 O 1.21285 * 119.99776 * 113.89975 * 8 7 6 10 10 N 1.34772 * 120.00606 * 293.89237 * 8 7 6 11 11 C 1.47160 * 120.71638 * 183.98754 * 10 8 7 12 12 C 1.53885 * 108.03094 * 132.75723 * 11 10 8 13 13 H 1.09004 * 112.57717 * 182.22773 * 12 11 10 14 14 C 1.54133 * 107.71063 * 306.32984 * 12 11 10 15 15 C 1.54279 * 104.88929 * 89.41083 * 14 12 11 16 16 C 1.54539 * 104.85053 * 359.80711 * 15 14 12 17 17 H 1.08998 * 112.18306 * 146.41144 * 16 15 14 18 18 C 1.47977 * 120.63955 * 3.69897 * 10 8 7 19 19 N 1.48312 * 107.20702 * 58.36687 * 12 11 10 20 20 C 1.36929 * 128.07406 * 106.70131 * 19 12 11 21 21 H 1.08004 * 119.99777 * 156.49200 * 20 19 12 22 22 C 1.38813 * 120.00370 * 336.49366 * 20 19 12 23 23 N 1.31619 * 119.99827 * 354.45917 * 22 20 19 24 24 Si 1.86797 * 120.00054 * 174.46226 * 22 20 19 25 25 H 1.48505 * 109.47132 * 270.00078 * 24 22 20 26 26 H 1.48502 * 109.47602 * 29.99582 * 24 22 20 27 27 H 1.48505 * 109.47552 * 149.99958 * 24 22 20 28 28 C 1.52995 * 117.50326 * 295.65900 * 7 6 5 29 29 C 1.53000 * 117.50072 * 4.32165 * 7 6 5 30 30 C 1.38210 * 120.00263 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47435 * 275.01718 * 1 2 3 32 32 H 1.08998 * 109.47585 * 35.02454 * 1 2 3 33 33 H 1.08997 * 109.47055 * 155.02192 * 1 2 3 34 34 H 1.07995 * 120.00409 * 0.02562 * 3 2 1 35 35 H 1.07997 * 119.99628 * 180.02562 * 4 3 2 36 36 H 1.08001 * 119.99893 * 180.27653 * 5 4 3 37 37 H 1.09001 * 109.74444 * 13.12513 * 11 10 8 38 38 H 1.08998 * 109.75358 * 252.39865 * 11 10 8 39 39 H 1.08991 * 110.50644 * 330.46874 * 14 12 11 40 40 H 1.09003 * 110.27374 * 208.23117 * 14 12 11 41 41 H 1.08997 * 110.35826 * 240.96309 * 15 14 12 42 42 H 1.09003 * 110.45247 * 118.69797 * 15 14 12 43 43 H 1.08997 * 109.69859 * 107.67012 * 18 10 8 44 44 H 1.09001 * 109.93602 * 346.85852 * 18 10 8 45 45 H 0.97003 * 119.99647 * 180.02562 * 23 22 20 46 46 H 1.09001 * 117.50250 * 215.00201 * 28 7 6 47 47 H 1.09001 * 117.49577 * 0.02562 * 28 7 6 48 48 H 1.09006 * 117.49507 * 359.97438 * 29 7 6 49 49 H 1.09000 * 117.49823 * 144.97220 * 29 7 6 50 50 H 1.08008 * 119.99743 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0001 0.0065 6 6 3.5806 -1.1968 0.0012 7 6 4.3342 -2.5019 0.0022 8 6 3.6365 -3.6547 0.6771 9 8 3.2736 -4.6101 0.0241 10 7 3.4159 -3.6241 2.0063 11 6 2.8152 -4.7774 2.6953 12 6 3.6517 -5.0693 3.9535 13 1 3.2922 -5.9397 4.5024 14 6 5.1206 -5.2270 3.5137 15 6 5.7098 -3.8028 3.5820 16 6 4.5385 -2.9117 4.0533 17 1 4.8757 -2.0866 4.6808 18 6 3.7792 -2.4317 2.8038 19 7 3.6407 -3.8398 4.7828 20 6 2.9641 -3.6160 5.9520 21 1 3.3134 -2.8622 6.6422 22 6 1.8294 -4.3578 6.2504 23 7 1.3409 -5.1986 5.3634 24 14 0.9959 -4.1628 7.9107 25 1 1.5793 -5.1307 8.8742 26 1 1.2050 -2.7801 8.4103 27 1 -0.4592 -4.4227 7.7677 28 6 5.2019 -2.8178 -1.2176 29 6 5.8589 -2.4373 0.1115 30 6 2.1981 -1.1969 0.0005 31 1 -0.3634 0.0899 1.0237 32 1 -0.3634 0.8415 -0.5898 33 1 -0.3633 -0.9315 -0.4339 34 1 1.6582 2.1327 0.0004 35 1 4.1203 2.1328 0.0010 36 1 5.3517 0.0001 0.0114 37 1 2.8250 -5.6458 2.0367 38 1 1.7898 -4.5426 2.9810 39 1 5.1751 -5.6116 2.4954 40 1 5.6505 -5.8900 4.1977 41 1 6.0541 -3.4872 2.5972 42 1 6.5291 -3.7636 4.3000 43 1 2.8756 -1.9008 3.1033 44 1 4.4172 -1.7717 2.2160 45 1 0.5477 -5.7167 5.5718 46 1 5.2682 -3.8593 -1.5321 47 1 5.2280 -2.0813 -2.0208 48 1 6.3170 -1.4507 0.1822 49 1 6.3573 -3.2283 0.6718 50 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029598978.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:51 Heat of formation + Delta-G solvation = 39.388031 kcal Electronic energy + Delta-G solvation = -31668.162041 eV Core-core repulsion = 27854.216696 eV Total energy + Delta-G solvation = -3813.945346 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.02943 -40.48432 -39.37192 -37.45747 -35.35898 -34.18143 -33.39987 -32.31977 -31.68987 -31.08032 -28.19873 -27.74999 -26.19159 -25.49385 -24.64462 -23.63219 -23.19514 -21.90102 -21.22162 -20.75276 -19.85717 -18.61660 -18.10756 -17.37896 -16.89423 -16.75871 -16.58903 -16.10139 -15.80143 -15.56657 -15.24225 -14.91520 -14.79221 -14.69980 -14.57913 -14.39735 -14.01876 -13.62251 -13.56932 -13.37281 -13.27675 -13.11947 -13.02259 -12.89241 -12.73531 -12.63854 -12.48075 -12.20818 -11.99984 -11.96244 -11.83783 -11.63719 -11.55196 -11.49447 -11.43265 -11.13194 -10.74126 -10.59801 -9.76057 -9.66111 -9.39170 -8.63493 -7.89254 -5.28637 0.39783 0.48268 1.46936 1.47416 1.55842 1.58038 2.04476 2.48993 2.61981 3.04261 3.32433 3.41521 3.47615 3.55222 3.83941 3.97209 4.04605 4.06062 4.07614 4.12272 4.22998 4.25570 4.31573 4.41265 4.42996 4.48387 4.56504 4.68038 4.72317 4.75366 4.78625 4.83432 4.86463 4.92515 4.95405 4.96681 5.06994 5.11082 5.13413 5.15450 5.21449 5.24532 5.27929 5.40752 5.53079 5.58063 5.59515 5.64270 5.71956 5.80632 6.12613 6.22552 6.59459 7.03760 7.20802 7.70054 8.52857 9.23828 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011555 B = 0.004528 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.630566 B = 6182.681765 C = 7296.890789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.093 4.093 3 C -0.128 4.128 4 C -0.105 4.105 5 C -0.122 4.122 6 C -0.037 4.037 7 C -0.137 4.137 8 C 0.543 3.457 9 O -0.599 6.599 10 N -0.581 5.581 11 C 0.127 3.873 12 C 0.173 3.827 13 H 0.065 0.935 14 C -0.128 4.128 15 C -0.111 4.111 16 C 0.126 3.874 17 H 0.093 0.907 18 C 0.116 3.884 19 N -0.601 5.601 20 C -0.236 4.236 21 H 0.079 0.921 22 C -0.051 4.051 23 N -0.936 5.936 24 Si 0.970 3.030 25 H -0.288 1.288 26 H -0.268 1.268 27 H -0.301 1.301 28 C -0.132 4.132 29 C -0.132 4.132 30 C -0.136 4.136 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.144 0.856 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.050 0.950 38 H 0.041 0.959 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.032 0.968 44 H 0.105 0.895 45 H 0.246 0.754 46 H 0.089 0.911 47 H 0.125 0.875 48 H 0.144 0.856 49 H 0.102 0.898 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.967 14.295 -11.772 21.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.123 4.123 5 C -0.140 4.140 6 C -0.038 4.038 7 C -0.140 4.140 8 C 0.332 3.668 9 O -0.481 6.481 10 N -0.311 5.311 11 C 0.002 3.998 12 C 0.065 3.935 13 H 0.083 0.917 14 C -0.167 4.167 15 C -0.150 4.150 16 C 0.019 3.981 17 H 0.111 0.889 18 C -0.008 4.008 19 N -0.323 5.323 20 C -0.365 4.365 21 H 0.096 0.904 22 C -0.246 4.246 23 N -0.582 5.582 24 Si 0.799 3.201 25 H -0.215 1.215 26 H -0.193 1.193 27 H -0.228 1.228 28 C -0.169 4.169 29 C -0.169 4.169 30 C -0.155 4.155 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.162 0.838 35 H 0.175 0.825 36 H 0.173 0.827 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.051 0.949 44 H 0.123 0.877 45 H 0.055 0.945 46 H 0.108 0.892 47 H 0.143 0.857 48 H 0.161 0.839 49 H 0.121 0.879 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.552 13.739 -11.908 20.537 hybrid contribution -1.713 -1.033 1.020 2.246 sum 7.838 12.706 -10.887 18.477 Atomic orbital electron populations 1.20822 0.90775 1.03022 1.02583 1.20086 0.96824 0.93095 0.99309 1.21330 0.95166 0.97312 1.00762 1.21480 0.93944 0.98836 0.98026 1.21260 1.01347 0.90590 1.00760 1.18734 0.92309 0.92348 1.00394 1.20011 0.94737 0.92593 1.06708 1.20003 0.78517 0.86911 0.81401 1.90612 1.54805 1.37881 1.64798 1.48259 1.59331 1.16994 1.06476 1.21987 0.97001 0.87090 0.93709 1.21410 0.91966 0.91098 0.88991 0.91657 1.22439 0.96678 0.98079 0.99485 1.22468 0.97138 0.93969 1.01403 1.22270 0.90721 0.93919 0.91177 0.88868 1.22519 0.98825 0.85919 0.93516 1.45252 1.53233 1.10063 1.23719 1.19258 1.03689 1.19102 0.94423 0.90362 1.25713 0.97324 1.00384 1.01138 1.70058 1.23885 1.29431 1.34849 0.85212 0.76898 0.78093 0.79857 1.21506 1.19260 1.22777 1.23142 0.98801 1.03331 0.91607 1.23448 0.88721 1.05594 0.99132 1.20787 0.94510 0.97085 1.03108 0.91418 0.89131 0.92909 0.83796 0.82477 0.82709 0.93141 0.94021 0.92901 0.92336 0.90116 0.90732 0.94916 0.87688 0.94453 0.89205 0.85672 0.83870 0.87946 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 10.01 71.24 0.71 -1.93 16 2 C -0.09 -2.39 5.88 -19.86 -0.12 -2.51 16 3 C -0.13 -2.52 9.72 22.27 0.22 -2.30 16 4 C -0.11 -1.75 10.05 22.27 0.22 -1.53 16 5 C -0.12 -2.27 9.33 22.27 0.21 -2.06 16 6 C -0.04 -0.97 3.87 -19.87 -0.08 -1.05 16 7 C -0.14 -3.78 1.27 -53.67 -0.07 -3.85 16 8 C 0.54 20.81 5.80 87.66 0.51 21.32 16 9 O -0.60 -27.69 16.20 -3.05 -0.05 -27.74 16 10 N -0.58 -23.30 2.28 -812.90 -1.85 -25.15 16 11 C 0.13 6.09 5.73 86.55 0.50 6.59 16 12 C 0.17 8.19 3.06 45.32 0.14 8.32 16 13 H 0.07 3.59 6.86 -2.38 -0.02 3.57 16 14 C -0.13 -4.83 6.16 31.41 0.19 -4.64 16 15 C -0.11 -3.49 6.19 31.55 0.20 -3.30 16 16 C 0.13 4.67 4.32 45.47 0.20 4.86 16 17 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 18 C 0.12 4.17 5.36 86.40 0.46 4.63 16 19 N -0.60 -28.73 2.78 -637.46 -1.77 -30.50 16 20 C -0.24 -12.46 10.34 84.03 0.87 -11.59 16 21 H 0.08 3.97 7.83 -2.91 -0.02 3.94 16 22 C -0.05 -2.77 5.43 84.86 0.46 -2.31 16 23 N -0.94 -54.53 10.20 21.65 0.22 -54.31 16 24 Si 0.97 44.67 29.56 68.60 2.03 46.69 16 25 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 28 C -0.13 -2.91 9.73 30.62 0.30 -2.61 16 29 C -0.13 -2.49 8.79 30.62 0.27 -2.22 16 30 C -0.14 -4.22 8.95 22.27 0.20 -4.02 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 32 H 0.09 1.55 8.12 -2.39 -0.02 1.53 16 33 H 0.05 1.30 8.05 -2.39 -0.02 1.28 16 34 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.16 1.85 5.95 -2.91 -0.02 1.83 16 37 H 0.05 2.51 7.15 -2.39 -0.02 2.49 16 38 H 0.04 2.35 7.29 -2.39 -0.02 2.33 16 39 H 0.05 1.98 7.83 -2.39 -0.02 1.96 16 40 H 0.06 2.13 8.14 -2.39 -0.02 2.12 16 41 H 0.08 2.13 6.03 -2.39 -0.01 2.11 16 42 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.11 3.00 5.24 -2.39 -0.01 2.99 16 45 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 46 H 0.09 2.29 8.01 -2.39 -0.02 2.27 16 47 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.14 1.64 6.10 -2.38 -0.01 1.63 16 49 H 0.10 2.01 6.64 -2.39 -0.02 2.00 16 50 H 0.08 2.97 7.33 -2.91 -0.02 2.95 16 Total: -1.00 -70.73 384.02 4.90 -65.82 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.94 Total: 25.38 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 5.39 Total: -0.18 kcal Atomic # 7 Polarization: -106.56 SS G_CDS: -3.40 Total: -109.97 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.05 Total: -27.74 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -70.73 4.90 -65.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029598978.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.210 kcal (2) G-P(sol) polarization free energy of solvation -70.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds