Wall clock time and date at job start Sat Apr 11 2020 06:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38267 * 119.99764 * 2 1 4 4 C 1.38215 * 119.99588 * 179.97438 * 3 2 1 5 5 C 1.38250 * 120.00155 * 359.74830 * 4 3 2 6 6 C 1.38218 * 120.00019 * 0.50682 * 5 4 3 7 7 C 1.50707 * 119.99979 * 179.76573 * 6 5 4 8 8 C 1.50694 * 112.84756 * 113.84633 * 7 6 5 9 9 O 1.21283 * 119.99884 * 114.30066 * 8 7 6 10 10 N 1.34777 * 120.00151 * 294.56941 * 8 7 6 11 11 C 1.47865 * 126.94350 * 4.89205 * 10 8 7 12 12 C 1.56022 * 105.10454 * 181.97675 * 11 10 8 13 13 H 1.09003 * 116.24602 * 158.83567 * 12 11 10 14 14 C 1.57086 * 99.60503 * 32.80820 * 12 11 10 15 15 C 1.49290 * 126.94433 * 184.57545 * 10 8 7 16 16 H 1.08999 * 116.15325 * 16.72437 * 15 10 8 17 17 C 1.56020 * 104.09056 * 246.72164 * 15 10 8 18 18 N 1.47362 * 105.14866 * 288.60562 * 17 15 10 19 19 C 1.36939 * 126.79188 * 182.06589 * 18 17 15 20 20 H 1.08001 * 120.00171 * 180.28660 * 19 18 17 21 21 C 1.38817 * 119.99765 * 0.27973 * 19 18 17 22 22 N 1.31620 * 120.00100 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99829 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47098 * 60.00362 * 23 21 19 25 25 H 1.48497 * 109.46904 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47139 * 300.00437 * 23 21 19 27 27 C 1.53778 * 113.61299 * 245.04288 * 7 6 5 28 28 C 1.54046 * 86.98605 * 140.02058 * 27 7 6 29 29 C 1.53781 * 113.61383 * 342.64925 * 7 6 5 30 30 C 1.38212 * 120.00027 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47316 * 270.02088 * 1 2 3 32 32 H 1.09005 * 109.47615 * 30.02309 * 1 2 3 33 33 H 1.09001 * 109.46999 * 150.01736 * 1 2 3 34 34 H 1.07998 * 119.99866 * 0.02562 * 3 2 1 35 35 H 1.08001 * 119.99490 * 180.02562 * 4 3 2 36 36 H 1.08001 * 120.00253 * 180.27566 * 5 4 3 37 37 H 1.08999 * 110.32069 * 300.88437 * 11 10 8 38 38 H 1.09002 * 110.31686 * 62.96901 * 11 10 8 39 39 H 1.08999 * 112.36528 * 64.27571 * 14 12 11 40 40 H 1.08994 * 112.36592 * 191.62497 * 14 12 11 41 41 H 1.09004 * 110.31608 * 47.67646 * 17 15 10 42 42 H 1.08998 * 110.31259 * 169.76438 * 17 15 10 43 43 H 0.96994 * 120.00078 * 179.97438 * 22 21 19 44 44 H 1.09000 * 113.61638 * 254.61402 * 27 7 6 45 45 H 1.09003 * 113.61328 * 25.51494 * 27 7 6 46 46 H 1.09008 * 113.62151 * 220.02220 * 28 27 7 47 47 H 1.08996 * 113.69031 * 89.12461 * 28 27 7 48 48 H 1.09004 * 113.61505 * 334.48303 * 29 7 6 49 49 H 1.08998 * 113.61421 * 105.38794 * 29 7 6 50 50 H 1.07992 * 120.00035 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2716 0.0001 0.0063 6 6 3.5806 -1.1969 0.0010 7 6 4.3342 -2.5020 0.0020 8 6 4.1348 -3.2918 1.2698 9 8 3.5567 -4.3575 1.2358 10 7 4.5941 -2.8114 2.4423 11 6 5.2206 -1.4930 2.6783 12 6 5.6019 -1.4890 4.1912 13 1 6.3756 -0.7824 4.4914 14 6 5.9317 -3.0129 4.3824 15 6 4.5673 -3.5003 3.7665 16 1 4.3992 -4.5771 3.7445 17 6 3.5755 -2.6484 4.6178 18 7 4.2898 -1.3900 4.8964 19 6 3.8367 -0.3388 5.6480 20 1 4.4537 0.5381 5.7775 21 6 2.5842 -0.4002 6.2433 22 7 1.8323 -1.4690 6.0858 23 14 1.9657 1.0340 7.2680 24 1 1.9023 2.2543 6.4240 25 1 0.6110 0.7216 7.7899 26 1 2.8924 1.2661 8.4049 27 6 4.1331 -3.3304 -1.2779 28 6 5.6322 -3.6744 -1.1935 29 6 5.8088 -2.3622 -0.4113 30 6 2.1980 -1.1969 0.0005 31 1 -0.3634 0.0004 1.0277 32 1 -0.3634 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5136 34 1 1.6582 2.1327 0.0004 35 1 4.1203 2.1328 0.0010 36 1 5.3516 0.0001 0.0112 37 1 6.1134 -1.3825 2.0628 38 1 4.5120 -0.6933 2.4629 39 1 6.7926 -3.3281 3.7928 40 1 6.0345 -3.2864 5.4325 41 1 2.6642 -2.4517 4.0529 42 1 3.3390 -3.1620 5.5496 43 1 0.9573 -1.5121 6.5021 44 1 3.4779 -4.1909 -1.1427 45 1 3.8711 -2.7305 -2.1496 46 1 6.1349 -3.6772 -2.1607 47 1 5.8444 -4.5662 -0.6037 48 1 6.0042 -1.4982 -1.0465 49 1 6.5055 -2.4416 0.4231 50 1 1.6581 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032554364.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:18 Heat of formation + Delta-G solvation = 69.409960 kcal Electronic energy + Delta-G solvation = -31688.895719 eV Core-core repulsion = 27876.252222 eV Total energy + Delta-G solvation = -3812.643497 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.00609 -39.34535 -38.33508 -36.63499 -33.62426 -32.61266 -31.56038 -30.96316 -29.05147 -28.53493 -27.01296 -26.10100 -25.47999 -25.14196 -23.53131 -22.03924 -21.27842 -20.98484 -19.91016 -19.25360 -18.10955 -16.98240 -16.69063 -16.10020 -15.74725 -15.51674 -15.08920 -14.95254 -14.33686 -14.22851 -13.96227 -13.62424 -13.55955 -13.20956 -13.02943 -12.85231 -12.41175 -12.32055 -12.19236 -12.02835 -11.83143 -11.75855 -11.54514 -11.43623 -11.25395 -11.03373 -10.96392 -10.85648 -10.80681 -10.73495 -10.55782 -10.31557 -10.24930 -10.19965 -10.07647 -9.62284 -9.45054 -8.69277 -8.54668 -8.32618 -7.93709 -6.89511 -5.74103 -3.08500 1.51098 1.59711 3.03128 3.37791 3.40151 3.42203 3.44068 3.90803 4.43438 4.49366 4.64015 4.66827 4.80919 4.85393 5.03282 5.09868 5.14440 5.22911 5.29271 5.36754 5.42212 5.48835 5.59443 5.62036 5.66781 5.67883 5.69194 5.76276 5.78354 5.82362 5.83473 5.95811 5.99229 6.10308 6.12648 6.21879 6.25186 6.28639 6.31182 6.35792 6.44100 6.55202 6.61560 6.64443 6.72113 6.77073 6.81014 7.19209 7.44999 7.52978 7.74756 8.12440 8.16151 8.63091 9.13288 9.73777 10.42859 11.37604 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010097 B = 0.005269 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2772.549600 B = 5313.246553 C = 6814.615306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.080 4.080 3 C -0.121 4.121 4 C -0.114 4.114 5 C -0.116 4.116 6 C -0.056 4.056 7 C -0.061 4.061 8 C 0.557 3.443 9 O -0.552 6.552 10 N -0.597 5.597 11 C 0.085 3.915 12 C 0.139 3.861 13 H 0.105 0.895 14 C -0.152 4.152 15 C 0.097 3.903 16 H 0.112 0.888 17 C 0.178 3.822 18 N -0.594 5.594 19 C -0.230 4.230 20 H 0.079 0.921 21 C -0.004 4.004 22 N -0.919 5.919 23 Si 0.910 3.090 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C -0.112 4.112 28 C -0.140 4.140 29 C -0.125 4.125 30 C -0.104 4.104 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.046 0.954 42 H 0.055 0.945 43 H 0.254 0.746 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.070 0.930 47 H 0.081 0.919 48 H 0.092 0.908 49 H 0.074 0.926 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.900 1.201 -14.731 16.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.080 4.080 3 C -0.139 4.139 4 C -0.132 4.132 5 C -0.134 4.134 6 C -0.056 4.056 7 C -0.064 4.064 8 C 0.344 3.656 9 O -0.431 6.431 10 N -0.329 5.329 11 C -0.040 4.040 12 C 0.030 3.970 13 H 0.122 0.878 14 C -0.192 4.192 15 C -0.006 4.006 16 H 0.129 0.871 17 C 0.053 3.947 18 N -0.318 5.318 19 C -0.358 4.358 20 H 0.097 0.903 21 C -0.201 4.201 22 N -0.565 5.565 23 Si 0.741 3.259 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.211 1.211 27 C -0.150 4.150 28 C -0.177 4.177 29 C -0.163 4.163 30 C -0.122 4.122 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.102 0.898 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.089 0.911 47 H 0.100 0.900 48 H 0.111 0.889 49 H 0.093 0.907 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.305 0.684 -14.656 15.969 hybrid contribution -0.523 0.916 0.666 1.247 sum 5.783 1.600 -13.990 15.222 Atomic orbital electron populations 1.20792 0.91370 1.02238 1.02709 1.19853 0.96034 0.93024 0.99127 1.20984 0.94347 0.97307 1.01244 1.21028 0.94238 0.97720 1.00190 1.20941 0.99666 0.91693 1.01112 1.19261 0.93297 0.92956 1.00134 1.20837 0.97345 0.93736 0.94510 1.19236 0.78222 0.85106 0.82990 1.90643 1.42720 1.23632 1.86113 1.49080 1.58702 1.17980 1.07176 1.23408 0.96409 0.84830 0.99344 1.23180 0.90219 0.94422 0.89166 0.87760 1.24216 0.95711 0.98359 1.00867 1.24438 0.97619 0.97368 0.81141 0.87055 1.21780 0.91717 0.85124 0.96105 1.45057 1.12781 1.16495 1.57448 1.18975 0.99520 0.94398 1.22943 0.90338 1.24791 0.96896 0.97702 1.00697 1.69911 1.11225 1.27590 1.47811 0.86231 0.77963 0.81651 0.80084 1.21200 1.21633 1.21123 1.22885 0.97403 0.99716 0.94981 1.22862 0.96632 0.97696 1.00502 1.23052 0.94088 0.98786 1.00343 1.20838 0.93536 0.97701 1.00155 0.90829 0.91800 0.91721 0.86402 0.86182 0.86074 0.93109 0.90647 0.91739 0.89838 0.93619 0.92739 0.93597 0.89803 0.89550 0.91123 0.90019 0.88942 0.90736 0.86367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.01 36.00 0.36 -1.10 16 2 C -0.08 -1.21 5.88 -104.62 -0.62 -1.82 16 3 C -0.12 -1.69 9.70 -39.58 -0.38 -2.07 16 4 C -0.11 -1.51 10.05 -39.59 -0.40 -1.91 16 5 C -0.12 -1.58 7.50 -39.58 -0.30 -1.88 16 6 C -0.06 -0.85 3.93 -104.62 -0.41 -1.26 16 7 C -0.06 -0.90 0.53 -156.00 -0.08 -0.98 16 8 C 0.56 10.40 6.40 -10.99 -0.07 10.32 16 9 O -0.55 -11.93 16.32 5.55 0.09 -11.84 16 10 N -0.60 -11.22 2.95 -156.56 -0.46 -11.68 16 11 C 0.09 1.49 4.94 -1.68 -0.01 1.48 16 12 C 0.14 2.61 5.53 -62.55 -0.35 2.26 16 13 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 14 C -0.15 -2.59 6.84 -22.10 -0.15 -2.74 16 15 C 0.10 1.91 5.25 -62.35 -0.33 1.59 16 16 H 0.11 2.15 8.08 -51.93 -0.42 1.73 16 17 C 0.18 4.35 4.74 -1.95 -0.01 4.34 16 18 N -0.59 -14.37 3.01 -156.74 -0.47 -14.85 16 19 C -0.23 -6.17 10.37 -15.06 -0.16 -6.32 16 20 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 21 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 22 N -0.92 -26.98 10.53 55.49 0.58 -26.39 16 23 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 C -0.11 -1.46 6.99 -25.78 -0.18 -1.64 16 28 C -0.14 -1.59 7.81 -25.78 -0.20 -1.79 16 29 C -0.13 -1.47 5.78 -25.92 -0.15 -1.62 16 30 C -0.10 -1.69 9.12 -39.58 -0.36 -2.05 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 33 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 34 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 36 H 0.12 1.41 6.43 -52.49 -0.34 1.07 16 37 H 0.05 0.73 6.47 -51.93 -0.34 0.40 16 38 H 0.08 1.51 6.55 -51.93 -0.34 1.17 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.05 1.30 7.68 -51.93 -0.40 0.90 16 42 H 0.05 1.47 7.42 -51.93 -0.39 1.08 16 43 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.08 1.22 7.34 -51.93 -0.38 0.84 16 45 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16 46 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 47 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 48 H 0.09 0.92 6.81 -51.93 -0.35 0.57 16 49 H 0.07 0.89 6.71 -51.93 -0.35 0.54 16 50 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 387.47 15.07 5.84 5.84 Total: -1.00 -31.84 387.47 -11.24 -43.08 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -7.91 Total: 6.39 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -3.88 Total: -7.40 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.35 Total: -52.92 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.84 -11.24 -43.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032554364.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.491 kcal (2) G-P(sol) polarization free energy of solvation -31.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds