Wall clock time and date at job start Sat Apr 11 2020 06:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38267 * 119.99764 * 2 1 4 4 C 1.38215 * 119.99588 * 179.97438 * 3 2 1 5 5 C 1.38250 * 120.00155 * 359.74830 * 4 3 2 6 6 C 1.38218 * 120.00019 * 0.50682 * 5 4 3 7 7 C 1.50707 * 119.99979 * 179.76573 * 6 5 4 8 8 C 1.50694 * 112.84756 * 113.84633 * 7 6 5 9 9 O 1.21283 * 119.99884 * 114.30066 * 8 7 6 10 10 N 1.34777 * 120.00151 * 294.56941 * 8 7 6 11 11 C 1.47865 * 126.94350 * 4.89205 * 10 8 7 12 12 C 1.56022 * 105.10454 * 181.97675 * 11 10 8 13 13 H 1.09003 * 116.24602 * 158.83567 * 12 11 10 14 14 C 1.57086 * 99.60503 * 32.80820 * 12 11 10 15 15 C 1.49290 * 126.94433 * 184.57545 * 10 8 7 16 16 H 1.08999 * 116.15325 * 16.72437 * 15 10 8 17 17 C 1.56020 * 104.09056 * 246.72164 * 15 10 8 18 18 N 1.47362 * 105.14866 * 288.60562 * 17 15 10 19 19 C 1.36939 * 126.79188 * 182.06589 * 18 17 15 20 20 H 1.08001 * 120.00171 * 180.28660 * 19 18 17 21 21 C 1.38817 * 119.99765 * 0.27973 * 19 18 17 22 22 N 1.31620 * 120.00100 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99829 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47098 * 60.00362 * 23 21 19 25 25 H 1.48497 * 109.46904 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47139 * 300.00437 * 23 21 19 27 27 C 1.53778 * 113.61299 * 245.04288 * 7 6 5 28 28 C 1.54046 * 86.98605 * 140.02058 * 27 7 6 29 29 C 1.53781 * 113.61383 * 342.64925 * 7 6 5 30 30 C 1.38212 * 120.00027 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47316 * 270.02088 * 1 2 3 32 32 H 1.09005 * 109.47615 * 30.02309 * 1 2 3 33 33 H 1.09001 * 109.46999 * 150.01736 * 1 2 3 34 34 H 1.07998 * 119.99866 * 0.02562 * 3 2 1 35 35 H 1.08001 * 119.99490 * 180.02562 * 4 3 2 36 36 H 1.08001 * 120.00253 * 180.27566 * 5 4 3 37 37 H 1.08999 * 110.32069 * 300.88437 * 11 10 8 38 38 H 1.09002 * 110.31686 * 62.96901 * 11 10 8 39 39 H 1.08999 * 112.36528 * 64.27571 * 14 12 11 40 40 H 1.08994 * 112.36592 * 191.62497 * 14 12 11 41 41 H 1.09004 * 110.31608 * 47.67646 * 17 15 10 42 42 H 1.08998 * 110.31259 * 169.76438 * 17 15 10 43 43 H 0.96994 * 120.00078 * 179.97438 * 22 21 19 44 44 H 1.09000 * 113.61638 * 254.61402 * 27 7 6 45 45 H 1.09003 * 113.61328 * 25.51494 * 27 7 6 46 46 H 1.09008 * 113.62151 * 220.02220 * 28 27 7 47 47 H 1.08996 * 113.69031 * 89.12461 * 28 27 7 48 48 H 1.09004 * 113.61505 * 334.48303 * 29 7 6 49 49 H 1.08998 * 113.61421 * 105.38794 * 29 7 6 50 50 H 1.07992 * 120.00035 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2716 0.0001 0.0063 6 6 3.5806 -1.1969 0.0010 7 6 4.3342 -2.5020 0.0020 8 6 4.1348 -3.2918 1.2698 9 8 3.5567 -4.3575 1.2358 10 7 4.5941 -2.8114 2.4423 11 6 5.2206 -1.4930 2.6783 12 6 5.6019 -1.4890 4.1912 13 1 6.3756 -0.7824 4.4914 14 6 5.9317 -3.0129 4.3824 15 6 4.5673 -3.5003 3.7665 16 1 4.3992 -4.5771 3.7445 17 6 3.5755 -2.6484 4.6178 18 7 4.2898 -1.3900 4.8964 19 6 3.8367 -0.3388 5.6480 20 1 4.4537 0.5381 5.7775 21 6 2.5842 -0.4002 6.2433 22 7 1.8323 -1.4690 6.0858 23 14 1.9657 1.0340 7.2680 24 1 1.9023 2.2543 6.4240 25 1 0.6110 0.7216 7.7899 26 1 2.8924 1.2661 8.4049 27 6 4.1331 -3.3304 -1.2779 28 6 5.6322 -3.6744 -1.1935 29 6 5.8088 -2.3622 -0.4113 30 6 2.1980 -1.1969 0.0005 31 1 -0.3634 0.0004 1.0277 32 1 -0.3634 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5136 34 1 1.6582 2.1327 0.0004 35 1 4.1203 2.1328 0.0010 36 1 5.3516 0.0001 0.0112 37 1 6.1134 -1.3825 2.0628 38 1 4.5120 -0.6933 2.4629 39 1 6.7926 -3.3281 3.7928 40 1 6.0345 -3.2864 5.4325 41 1 2.6642 -2.4517 4.0529 42 1 3.3390 -3.1620 5.5496 43 1 0.9573 -1.5121 6.5021 44 1 3.4779 -4.1909 -1.1427 45 1 3.8711 -2.7305 -2.1496 46 1 6.1349 -3.6772 -2.1607 47 1 5.8444 -4.5662 -0.6037 48 1 6.0042 -1.4982 -1.0465 49 1 6.5055 -2.4416 0.4231 50 1 1.6581 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032554364.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:17 Heat of formation + Delta-G solvation = 52.701026 kcal Electronic energy + Delta-G solvation = -31689.620273 eV Core-core repulsion = 27876.252222 eV Total energy + Delta-G solvation = -3813.368051 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.28997 -40.77085 -39.57101 -37.97866 -35.48180 -33.73047 -33.24069 -32.12134 -30.75355 -30.25998 -28.08957 -27.26730 -26.95779 -26.47575 -25.17138 -23.34619 -22.55063 -22.04945 -21.45209 -20.78874 -19.65890 -18.53015 -17.98161 -17.49750 -17.33579 -16.86017 -16.40459 -16.09579 -15.93402 -15.72719 -15.37576 -15.01166 -14.72645 -14.61066 -14.35801 -14.07598 -13.82516 -13.59566 -13.54400 -13.31147 -13.18466 -13.17007 -12.98104 -12.85473 -12.71881 -12.61477 -12.46195 -12.31537 -12.16750 -12.09882 -12.01179 -11.88761 -11.83971 -11.54372 -11.33341 -11.22999 -10.91892 -10.68934 -9.69457 -9.53000 -9.43608 -8.89960 -7.83898 -5.19720 0.40106 0.48210 1.44402 1.47562 1.53460 1.59013 1.98111 2.47938 2.79872 3.32244 3.36429 3.45042 3.57474 3.63254 3.67867 3.82168 3.86698 3.90896 4.00038 4.02886 4.06329 4.19222 4.24483 4.38270 4.45079 4.53440 4.62939 4.66787 4.69245 4.76005 4.78330 4.81777 4.86508 4.89514 4.95468 5.00713 5.03363 5.07432 5.09895 5.13798 5.18138 5.24649 5.27180 5.41980 5.44694 5.53460 5.57333 5.63757 5.65239 5.69657 6.10146 6.12347 6.67795 7.03208 7.15427 7.71897 8.41979 9.26810 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010097 B = 0.005269 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2772.549600 B = 5313.246553 C = 6814.615306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.131 4.131 4 C -0.114 4.114 5 C -0.115 4.115 6 C -0.064 4.064 7 C -0.068 4.068 8 C 0.550 3.450 9 O -0.594 6.594 10 N -0.600 5.600 11 C 0.096 3.904 12 C 0.133 3.867 13 H 0.137 0.863 14 C -0.127 4.127 15 C 0.096 3.904 16 H 0.110 0.890 17 C 0.194 3.806 18 N -0.612 5.612 19 C -0.228 4.228 20 H 0.095 0.905 21 C -0.070 4.070 22 N -0.958 5.958 23 Si 0.974 3.026 24 H -0.277 1.277 25 H -0.304 1.304 26 H -0.271 1.271 27 C -0.114 4.114 28 C -0.130 4.130 29 C -0.110 4.110 30 C -0.135 4.135 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.138 0.862 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.099 0.901 38 H 0.050 0.950 39 H 0.106 0.894 40 H 0.080 0.920 41 H -0.013 1.013 42 H 0.015 0.985 43 H 0.242 0.758 44 H 0.055 0.945 45 H 0.104 0.896 46 H 0.101 0.899 47 H 0.065 0.935 48 H 0.122 0.878 49 H 0.081 0.919 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.955 3.760 -16.367 20.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.099 4.099 3 C -0.149 4.149 4 C -0.131 4.131 5 C -0.132 4.132 6 C -0.065 4.065 7 C -0.071 4.071 8 C 0.339 3.661 9 O -0.476 6.476 10 N -0.331 5.331 11 C -0.028 4.028 12 C 0.026 3.974 13 H 0.155 0.845 14 C -0.166 4.166 15 C -0.007 4.007 16 H 0.127 0.873 17 C 0.068 3.932 18 N -0.336 5.336 19 C -0.357 4.357 20 H 0.113 0.887 21 C -0.263 4.263 22 N -0.607 5.607 23 Si 0.803 3.197 24 H -0.203 1.203 25 H -0.231 1.231 26 H -0.197 1.197 27 C -0.152 4.152 28 C -0.167 4.167 29 C -0.148 4.148 30 C -0.153 4.153 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.156 0.844 35 H 0.169 0.831 36 H 0.169 0.831 37 H 0.117 0.883 38 H 0.068 0.932 39 H 0.124 0.876 40 H 0.099 0.901 41 H 0.006 0.994 42 H 0.033 0.967 43 H 0.051 0.949 44 H 0.074 0.926 45 H 0.122 0.878 46 H 0.119 0.881 47 H 0.084 0.916 48 H 0.140 0.860 49 H 0.099 0.901 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.426 3.271 -16.314 19.635 hybrid contribution -1.829 0.102 1.155 2.166 sum 8.597 3.373 -15.158 17.750 Atomic orbital electron populations 1.20804 0.90616 1.03649 1.01902 1.20138 0.97019 0.93301 0.99492 1.21327 0.95271 0.97465 1.00833 1.21465 0.94054 0.99011 0.98607 1.21261 1.01095 0.90876 1.00000 1.19373 0.92734 0.93903 1.00450 1.20871 1.00287 0.93240 0.92681 1.20048 0.76954 0.84922 0.84146 1.90615 1.44250 1.25804 1.86894 1.49161 1.58836 1.18436 1.06693 1.23287 0.97293 0.83180 0.99075 1.23635 0.88361 0.96262 0.89100 0.84515 1.24113 0.94900 0.96393 1.01170 1.24261 0.98156 0.96685 0.81644 0.87257 1.21315 0.91302 0.86328 0.94293 1.45298 1.15033 1.15628 1.57632 1.19481 0.99354 0.95230 1.21596 0.88690 1.25640 0.97687 1.00118 1.02825 1.70176 1.11126 1.29892 1.49545 0.85210 0.76742 0.78875 0.78898 1.20286 1.23091 1.19714 1.22939 0.98546 0.98796 0.94879 1.22806 0.95019 0.97096 1.01824 1.23113 0.91064 0.99838 1.00737 1.20885 0.94725 0.97273 1.02426 0.92637 0.89283 0.91492 0.84432 0.83061 0.83093 0.88274 0.93156 0.87589 0.90108 0.99436 0.96686 0.94892 0.92633 0.87762 0.88070 0.91607 0.86013 0.90079 0.88958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.02 10.01 71.23 0.71 -2.31 16 2 C -0.10 -3.05 5.88 -19.86 -0.12 -3.16 16 3 C -0.13 -3.46 9.70 22.27 0.22 -3.25 16 4 C -0.11 -2.66 10.05 22.27 0.22 -2.44 16 5 C -0.11 -2.75 7.50 22.27 0.17 -2.58 16 6 C -0.06 -1.88 3.93 -19.86 -0.08 -1.96 16 7 C -0.07 -1.92 0.53 -53.15 -0.03 -1.94 16 8 C 0.55 20.76 6.40 87.66 0.56 21.32 16 9 O -0.59 -27.06 16.32 -3.04 -0.05 -27.11 16 10 N -0.60 -22.22 2.95 -767.64 -2.26 -24.48 16 11 C 0.10 3.08 4.94 87.17 0.43 3.51 16 12 C 0.13 4.59 5.53 46.93 0.26 4.85 16 13 H 0.14 3.89 8.14 -2.39 -0.02 3.88 16 14 C -0.13 -3.98 6.84 33.60 0.23 -3.75 16 15 C 0.10 3.84 5.25 47.06 0.25 4.09 16 16 H 0.11 4.39 8.08 -2.39 -0.02 4.37 16 17 C 0.19 10.03 4.74 87.26 0.41 10.44 16 18 N -0.61 -29.73 3.01 -649.79 -1.95 -31.69 16 19 C -0.23 -12.19 10.37 84.03 0.87 -11.32 16 20 H 0.10 4.67 7.83 -2.91 -0.02 4.64 16 21 C -0.07 -4.00 5.49 84.86 0.47 -3.54 16 22 N -0.96 -59.71 10.53 21.65 0.23 -59.49 16 23 Si 0.97 45.81 29.55 68.60 2.03 47.83 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 27 C -0.11 -2.87 6.99 31.21 0.22 -2.65 16 28 C -0.13 -2.59 7.81 31.21 0.24 -2.35 16 29 C -0.11 -2.11 5.78 31.12 0.18 -1.93 16 30 C -0.13 -4.56 9.12 22.27 0.20 -4.36 16 31 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.09 1.86 8.09 -2.38 -0.02 1.84 16 33 H 0.07 1.69 8.09 -2.39 -0.02 1.67 16 34 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 35 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 36 H 0.15 2.64 6.43 -2.91 -0.02 2.62 16 37 H 0.10 2.29 6.47 -2.39 -0.02 2.28 16 38 H 0.05 1.92 6.55 -2.39 -0.02 1.90 16 39 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 41 H -0.01 -0.78 7.68 -2.38 -0.02 -0.80 16 42 H 0.02 0.88 7.42 -2.39 -0.02 0.86 16 43 H 0.24 14.94 8.31 -92.71 -0.77 14.17 16 44 H 0.05 1.70 7.34 -2.39 -0.02 1.68 16 45 H 0.10 2.22 8.09 -2.39 -0.02 2.20 16 46 H 0.10 1.42 8.14 -2.38 -0.02 1.41 16 47 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.12 1.68 6.81 -2.38 -0.02 1.66 16 49 H 0.08 1.48 6.71 -2.39 -0.02 1.47 16 50 H 0.09 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -76.76 387.47 4.34 -72.42 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 0.93 Total: 25.85 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: 5.42 Total: -3.33 kcal Atomic # 7 Polarization: -111.67 SS G_CDS: -3.99 Total: -115.66 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.05 Total: -27.11 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -76.76 4.34 -72.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032554364.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.116 kcal (2) G-P(sol) polarization free energy of solvation -76.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds