Wall clock time and date at job start Sat Apr 11 2020 06:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.24891 * 2 1 4 4 O 1.21285 * 119.99827 * 235.98296 * 3 2 1 5 5 N 1.34771 * 120.00291 * 55.98220 * 3 2 1 6 6 C 1.47868 * 126.94734 * 354.26887 * 5 3 2 7 7 C 1.56021 * 105.10555 * 181.97923 * 6 5 3 8 8 H 1.08997 * 116.89127 * 159.20814 * 7 6 5 9 9 C 1.57085 * 99.60767 * 32.80611 * 7 6 5 10 10 C 1.49299 * 126.94321 * 174.24274 * 5 3 2 11 11 H 1.08997 * 116.78716 * 16.33028 * 10 5 3 12 12 C 1.56015 * 104.09318 * 246.71751 * 10 5 3 13 13 N 1.47866 * 105.10830 * 288.77199 * 12 10 5 14 14 C 1.36941 * 126.94684 * 181.98467 * 13 12 10 15 15 H 1.07996 * 119.99882 * 180.02562 * 14 13 12 16 16 C 1.38806 * 119.99674 * 0.02562 * 14 13 12 17 17 N 1.31615 * 120.00331 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99624 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47095 * 60.00025 * 18 16 14 20 20 H 1.48499 * 109.46942 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46728 * 299.99684 * 18 16 14 22 22 C 1.52738 * 109.25255 * 119.46218 * 2 1 3 23 23 C 1.53327 * 108.37390 * 171.32210 * 22 2 1 24 24 C 1.52740 * 108.37532 * 290.08213 * 23 22 2 25 25 C 1.50629 * 110.59155 * 51.05665 * 24 23 22 26 26 C 1.38913 * 117.75501 * 162.53328 * 25 24 23 27 27 C 1.37930 * 120.54968 * 179.80309 * 26 25 24 28 28 C 1.38266 * 119.76862 * 359.95782 * 27 26 25 29 29 C 1.37922 * 119.77463 * 0.10078 * 28 27 26 30 30 C 1.37588 * 122.54835 * 342.47475 * 25 24 23 31 31 H 1.09001 * 109.47030 * 46.11987 * 1 2 3 32 32 H 1.09002 * 109.47417 * 166.11756 * 1 2 3 33 33 H 1.08998 * 109.47556 * 286.12200 * 1 2 3 34 34 H 1.09001 * 110.31266 * 63.07407 * 6 5 3 35 35 H 1.08999 * 110.31308 * 300.88814 * 6 5 3 36 36 H 1.09000 * 112.36467 * 64.27205 * 9 7 6 37 37 H 1.08998 * 112.36839 * 191.62426 * 9 7 6 38 38 H 1.08998 * 110.31627 * 169.86080 * 12 10 5 39 39 H 1.09008 * 110.31332 * 47.67437 * 12 10 5 40 40 H 0.97006 * 120.00193 * 179.97438 * 17 16 14 41 41 H 1.08994 * 109.68709 * 291.04635 * 22 2 1 42 42 H 1.09005 * 109.67904 * 51.60602 * 22 2 1 43 43 H 1.09002 * 109.68259 * 49.79905 * 23 22 2 44 44 H 1.08996 * 109.68373 * 170.32286 * 23 22 2 45 45 H 1.08998 * 109.25034 * 171.34002 * 24 23 22 46 46 H 1.09004 * 109.25009 * 290.80428 * 24 23 22 47 47 H 1.08004 * 119.72110 * 359.78098 * 26 25 24 48 48 H 1.07999 * 120.11384 * 179.97438 * 27 26 25 49 49 H 1.08006 * 120.11259 * 180.02562 * 28 27 26 50 50 H 1.07998 * 119.73140 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0268 1.4227 0.0000 4 8 2.7815 1.8015 -0.8706 5 7 1.6325 2.2742 0.9674 6 6 0.6339 2.0151 2.0267 7 6 0.5353 3.3503 2.8278 8 1 -0.3674 3.5051 3.4188 9 6 0.7960 4.3737 1.6649 10 6 2.1162 3.6696 1.1864 11 1 2.6467 4.1412 0.3592 12 6 2.8802 3.5981 2.5448 13 7 1.8286 3.4254 3.5698 14 6 2.0052 3.3495 4.9256 15 1 1.1518 3.2215 5.5750 16 6 3.2811 3.4370 5.4652 17 7 4.3211 3.5925 4.6738 18 14 3.5221 3.3327 7.3147 19 1 3.0130 2.0277 7.8074 20 1 4.9677 3.4516 7.6330 21 1 2.7774 4.4355 7.9739 22 6 2.0336 -0.7092 1.2555 23 6 3.5510 -0.8915 1.1318 24 6 3.8243 -1.9300 0.0456 25 6 3.0818 -1.5827 -1.2182 26 6 3.4937 -2.1894 -2.3980 27 6 2.8520 -1.9162 -3.5880 28 6 1.7894 -1.0318 -3.6076 29 6 1.3796 -0.4274 -2.4376 30 6 2.0268 -0.6997 -1.2380 31 1 -0.3633 0.7123 -0.7407 32 1 -0.3634 -0.9976 -0.2466 33 1 -0.3634 0.2854 0.9872 34 1 0.9723 1.2080 2.6765 35 1 -0.3309 1.7669 1.5846 36 1 0.0137 4.3477 0.9064 37 1 0.9732 5.3840 2.0335 38 1 3.4301 4.5229 2.7188 39 1 3.5596 2.7457 2.5524 40 1 5.2128 3.6541 5.0509 41 1 1.8068 -0.1056 2.1342 42 1 1.5529 -1.6835 1.3446 43 1 4.0136 0.0567 0.8579 44 1 3.9578 -1.2375 2.0820 45 1 4.8938 -1.9594 -0.1625 46 1 3.4990 -2.9099 0.3952 47 1 4.3235 -2.8806 -2.3833 48 1 3.1784 -2.3916 -4.5011 49 1 1.2826 -0.8141 -4.5362 50 1 0.5492 0.2630 -2.4536 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032685739.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:37 Heat of formation + Delta-G solvation = 48.458172 kcal Electronic energy + Delta-G solvation = -31609.477585 eV Core-core repulsion = 27795.925550 eV Total energy + Delta-G solvation = -3813.552035 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.04105 -39.54286 -37.68725 -35.92546 -33.91535 -33.39228 -31.47203 -30.13882 -29.75136 -28.75756 -28.52674 -26.59028 -25.29775 -24.20855 -22.96774 -22.65188 -21.92379 -20.73064 -19.88712 -19.23279 -18.39856 -16.96698 -16.44340 -15.99577 -15.79089 -15.47420 -15.09173 -15.05287 -14.29518 -14.19107 -13.94187 -13.79137 -13.50675 -13.31759 -13.05006 -12.85088 -12.71519 -12.31395 -12.26138 -11.98838 -11.85227 -11.70299 -11.63438 -11.41955 -11.30811 -11.16487 -10.96785 -10.85107 -10.83353 -10.72910 -10.58490 -10.38122 -10.20933 -10.12506 -9.99594 -9.63239 -9.25411 -8.71574 -8.63844 -8.45483 -7.94469 -6.93309 -5.77908 -3.12526 1.45780 1.49564 3.09992 3.35856 3.40388 3.40812 3.42487 3.90444 4.40419 4.53378 4.68176 4.78613 4.95001 4.99074 5.03395 5.14818 5.18159 5.18642 5.22873 5.34241 5.41252 5.44585 5.54541 5.54870 5.61548 5.62640 5.71521 5.74605 5.78339 5.86556 5.92352 5.95363 6.01280 6.08697 6.13023 6.16043 6.19493 6.29960 6.37457 6.41414 6.48266 6.55837 6.58630 6.58854 6.60802 6.74253 6.78990 7.11170 7.41139 7.48709 7.70458 8.08150 8.15432 8.66263 9.08804 9.69858 10.39192 11.33801 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017015 B = 0.003707 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.186000 B = 7551.214453 C = 8310.338232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.033 4.033 3 C 0.542 3.458 4 O -0.547 6.547 5 N -0.603 5.603 6 C 0.076 3.924 7 C 0.139 3.861 8 H 0.105 0.895 9 C -0.152 4.152 10 C 0.097 3.903 11 H 0.112 0.888 12 C 0.176 3.824 13 N -0.596 5.596 14 C -0.233 4.233 15 H 0.080 0.920 16 C -0.004 4.004 17 N -0.918 5.918 18 Si 0.911 3.089 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.285 1.285 22 C -0.113 4.113 23 C -0.122 4.122 24 C -0.079 4.079 25 C -0.064 4.064 26 C -0.126 4.126 27 C -0.122 4.122 28 C -0.128 4.128 29 C -0.100 4.100 30 C -0.042 4.042 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.054 0.946 39 H 0.047 0.953 40 H 0.254 0.746 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.118 0.882 48 H 0.117 0.883 49 H 0.118 0.882 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.813 -9.894 -11.591 17.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.037 4.037 3 C 0.329 3.671 4 O -0.425 6.425 5 N -0.336 5.336 6 C -0.049 4.049 7 C 0.030 3.970 8 H 0.123 0.877 9 C -0.192 4.192 10 C -0.005 4.005 11 H 0.129 0.871 12 C 0.051 3.949 13 N -0.320 5.320 14 C -0.360 4.360 15 H 0.097 0.903 16 C -0.201 4.201 17 N -0.565 5.565 18 Si 0.741 3.259 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.211 1.211 22 C -0.151 4.151 23 C -0.159 4.159 24 C -0.116 4.116 25 C -0.064 4.064 26 C -0.144 4.144 27 C -0.140 4.140 28 C -0.147 4.147 29 C -0.118 4.118 30 C -0.042 4.042 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.136 0.864 48 H 0.136 0.864 49 H 0.136 0.864 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.144 -9.746 -11.911 16.968 hybrid contribution 0.322 -0.057 0.892 0.950 sum -6.822 -9.803 -11.019 16.250 Atomic orbital electron populations 1.22169 0.92515 1.02567 1.03409 1.19607 0.96783 0.92530 0.94741 1.19855 0.80824 0.85942 0.80433 1.90671 1.37009 1.77942 1.36868 1.49092 1.41619 1.14370 1.28514 1.23607 0.90378 1.01450 0.89442 1.23202 0.91861 0.90920 0.91042 0.87673 1.24160 0.96824 0.99618 0.98574 1.24304 0.96508 0.80750 0.98946 0.87055 1.21910 0.89596 1.01018 0.82418 1.45221 0.99714 1.85141 1.01974 1.18986 0.92859 1.43871 0.80332 0.90260 1.24796 0.95513 1.01929 0.97845 1.69907 0.98040 1.55533 1.32988 0.86223 0.76869 0.77880 0.84889 1.21172 1.21646 1.21147 1.21760 0.96292 1.00713 0.96297 1.21550 0.96008 0.99833 0.98518 1.20492 0.99515 0.99136 0.92487 1.19582 0.95132 0.96446 0.95284 1.21069 1.00327 1.00672 0.92286 1.20988 0.96542 0.98830 0.97638 1.20970 0.97859 0.98047 0.97775 1.21105 0.99778 0.98791 0.92133 1.19011 0.95443 0.96158 0.93582 0.92199 0.91600 0.90348 0.90628 0.92171 0.91759 0.89901 0.92786 0.93507 0.93560 0.89583 0.90890 0.91195 0.90904 0.90845 0.90758 0.86422 0.86449 0.86429 0.86564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 6.93 37.16 0.26 -1.53 16 2 C -0.03 -0.50 0.38 -156.98 -0.06 -0.55 16 3 C 0.54 9.92 5.42 -10.99 -0.06 9.87 16 4 O -0.55 -11.92 16.23 5.55 0.09 -11.83 16 5 N -0.60 -10.85 2.91 -156.78 -0.46 -11.30 16 6 C 0.08 1.24 4.46 -1.67 -0.01 1.23 16 7 C 0.14 2.48 5.53 -62.55 -0.35 2.13 16 8 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 9 C -0.15 -2.54 6.81 -22.30 -0.15 -2.69 16 10 C 0.10 1.88 5.24 -62.55 -0.33 1.55 16 11 H 0.11 2.14 8.06 -51.93 -0.42 1.72 16 12 C 0.18 4.14 4.76 -1.68 -0.01 4.13 16 13 N -0.60 -13.88 3.02 -156.34 -0.47 -14.35 16 14 C -0.23 -6.02 10.37 -15.06 -0.16 -6.17 16 15 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 16 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 17 N -0.92 -26.23 10.56 55.49 0.59 -25.65 16 18 Si 0.91 21.32 29.55 -169.99 -5.02 16.29 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 22 C -0.11 -1.62 4.54 -26.70 -0.12 -1.74 16 23 C -0.12 -1.84 5.93 -26.70 -0.16 -1.99 16 24 C -0.08 -1.03 5.67 -28.05 -0.16 -1.19 16 25 C -0.06 -0.92 5.73 -104.64 -0.60 -1.52 16 26 C -0.13 -1.58 9.61 -39.44 -0.38 -1.96 16 27 C -0.12 -1.45 10.05 -39.68 -0.40 -1.85 16 28 C -0.13 -1.60 10.05 -39.69 -0.40 -1.99 16 29 C -0.10 -1.40 8.77 -39.42 -0.35 -1.75 16 30 C -0.04 -0.62 3.97 -104.61 -0.42 -1.04 16 31 H 0.06 0.71 7.00 -51.93 -0.36 0.34 16 32 H 0.06 0.69 8.06 -51.93 -0.42 0.27 16 33 H 0.08 0.88 4.94 -51.93 -0.26 0.63 16 34 H 0.08 1.33 5.77 -51.93 -0.30 1.03 16 35 H 0.06 0.80 5.81 -51.93 -0.30 0.50 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.05 1.42 7.46 -51.93 -0.39 1.03 16 39 H 0.05 1.27 7.68 -51.92 -0.40 0.87 16 40 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.09 1.35 5.08 -51.93 -0.26 1.09 16 42 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 43 H 0.07 1.29 7.19 -51.93 -0.37 0.92 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.07 0.90 8.13 -51.93 -0.42 0.47 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.12 1.22 8.05 -52.48 -0.42 0.79 16 48 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 49 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 50 H 0.12 1.52 6.65 -52.49 -0.35 1.17 16 LS Contribution 374.25 15.07 5.64 5.64 Total: -1.00 -31.34 374.25 -11.17 -42.51 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -7.60 Total: 5.96 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -3.93 Total: -7.28 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -0.34 Total: -51.30 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.34 -11.17 -42.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032685739.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.971 kcal (2) G-P(sol) polarization free energy of solvation -31.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds