Wall clock time and date at job start Sat Apr 11 2020 06:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.24891 * 2 1 4 4 O 1.21285 * 119.99827 * 235.98296 * 3 2 1 5 5 N 1.34771 * 120.00291 * 55.98220 * 3 2 1 6 6 C 1.47868 * 126.94734 * 354.26887 * 5 3 2 7 7 C 1.56021 * 105.10555 * 181.97923 * 6 5 3 8 8 H 1.08997 * 116.89127 * 159.20814 * 7 6 5 9 9 C 1.57085 * 99.60767 * 32.80611 * 7 6 5 10 10 C 1.49299 * 126.94321 * 174.24274 * 5 3 2 11 11 H 1.08997 * 116.78716 * 16.33028 * 10 5 3 12 12 C 1.56015 * 104.09318 * 246.71751 * 10 5 3 13 13 N 1.47866 * 105.10830 * 288.77199 * 12 10 5 14 14 C 1.36941 * 126.94684 * 181.98467 * 13 12 10 15 15 H 1.07996 * 119.99882 * 180.02562 * 14 13 12 16 16 C 1.38806 * 119.99674 * 0.02562 * 14 13 12 17 17 N 1.31615 * 120.00331 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99624 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47095 * 60.00025 * 18 16 14 20 20 H 1.48499 * 109.46942 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46728 * 299.99684 * 18 16 14 22 22 C 1.52738 * 109.25255 * 119.46218 * 2 1 3 23 23 C 1.53327 * 108.37390 * 171.32210 * 22 2 1 24 24 C 1.52740 * 108.37532 * 290.08213 * 23 22 2 25 25 C 1.50629 * 110.59155 * 51.05665 * 24 23 22 26 26 C 1.38913 * 117.75501 * 162.53328 * 25 24 23 27 27 C 1.37930 * 120.54968 * 179.80309 * 26 25 24 28 28 C 1.38266 * 119.76862 * 359.95782 * 27 26 25 29 29 C 1.37922 * 119.77463 * 0.10078 * 28 27 26 30 30 C 1.37588 * 122.54835 * 342.47475 * 25 24 23 31 31 H 1.09001 * 109.47030 * 46.11987 * 1 2 3 32 32 H 1.09002 * 109.47417 * 166.11756 * 1 2 3 33 33 H 1.08998 * 109.47556 * 286.12200 * 1 2 3 34 34 H 1.09001 * 110.31266 * 63.07407 * 6 5 3 35 35 H 1.08999 * 110.31308 * 300.88814 * 6 5 3 36 36 H 1.09000 * 112.36467 * 64.27205 * 9 7 6 37 37 H 1.08998 * 112.36839 * 191.62426 * 9 7 6 38 38 H 1.08998 * 110.31627 * 169.86080 * 12 10 5 39 39 H 1.09008 * 110.31332 * 47.67437 * 12 10 5 40 40 H 0.97006 * 120.00193 * 179.97438 * 17 16 14 41 41 H 1.08994 * 109.68709 * 291.04635 * 22 2 1 42 42 H 1.09005 * 109.67904 * 51.60602 * 22 2 1 43 43 H 1.09002 * 109.68259 * 49.79905 * 23 22 2 44 44 H 1.08996 * 109.68373 * 170.32286 * 23 22 2 45 45 H 1.08998 * 109.25034 * 171.34002 * 24 23 22 46 46 H 1.09004 * 109.25009 * 290.80428 * 24 23 22 47 47 H 1.08004 * 119.72110 * 359.78098 * 26 25 24 48 48 H 1.07999 * 120.11384 * 179.97438 * 27 26 25 49 49 H 1.08006 * 120.11259 * 180.02562 * 28 27 26 50 50 H 1.07998 * 119.73140 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0268 1.4227 0.0000 4 8 2.7815 1.8015 -0.8706 5 7 1.6325 2.2742 0.9674 6 6 0.6339 2.0151 2.0267 7 6 0.5353 3.3503 2.8278 8 1 -0.3674 3.5051 3.4188 9 6 0.7960 4.3737 1.6649 10 6 2.1162 3.6696 1.1864 11 1 2.6467 4.1412 0.3592 12 6 2.8802 3.5981 2.5448 13 7 1.8286 3.4254 3.5698 14 6 2.0052 3.3495 4.9256 15 1 1.1518 3.2215 5.5750 16 6 3.2811 3.4370 5.4652 17 7 4.3211 3.5925 4.6738 18 14 3.5221 3.3327 7.3147 19 1 3.0130 2.0277 7.8074 20 1 4.9677 3.4516 7.6330 21 1 2.7774 4.4355 7.9739 22 6 2.0336 -0.7092 1.2555 23 6 3.5510 -0.8915 1.1318 24 6 3.8243 -1.9300 0.0456 25 6 3.0818 -1.5827 -1.2182 26 6 3.4937 -2.1894 -2.3980 27 6 2.8520 -1.9162 -3.5880 28 6 1.7894 -1.0318 -3.6076 29 6 1.3796 -0.4274 -2.4376 30 6 2.0268 -0.6997 -1.2380 31 1 -0.3633 0.7123 -0.7407 32 1 -0.3634 -0.9976 -0.2466 33 1 -0.3634 0.2854 0.9872 34 1 0.9723 1.2080 2.6765 35 1 -0.3309 1.7669 1.5846 36 1 0.0137 4.3477 0.9064 37 1 0.9732 5.3840 2.0335 38 1 3.4301 4.5229 2.7188 39 1 3.5596 2.7457 2.5524 40 1 5.2128 3.6541 5.0509 41 1 1.8068 -0.1056 2.1342 42 1 1.5529 -1.6835 1.3446 43 1 4.0136 0.0567 0.8579 44 1 3.9578 -1.2375 2.0820 45 1 4.8938 -1.9594 -0.1625 46 1 3.4990 -2.9099 0.3952 47 1 4.3235 -2.8806 -2.3833 48 1 3.1784 -2.3916 -4.5011 49 1 1.2826 -0.8141 -4.5362 50 1 0.5492 0.2630 -2.4536 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032685739.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:35 Heat of formation + Delta-G solvation = 31.972086 kcal Electronic energy + Delta-G solvation = -31610.192475 eV Core-core repulsion = 27795.925550 eV Total energy + Delta-G solvation = -3814.266925 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -42.31005 -40.88225 -39.06821 -37.10757 -35.48339 -34.75373 -33.12681 -31.23427 -31.00437 -30.25026 -30.09161 -27.60257 -26.99805 -25.78185 -24.19621 -23.74174 -23.24783 -21.97581 -21.37283 -20.66602 -19.84638 -18.65407 -17.68998 -17.43769 -17.13694 -16.65706 -16.52313 -16.33266 -15.89509 -15.52639 -15.29865 -15.01667 -14.78888 -14.61040 -14.19906 -14.08560 -13.95113 -13.68704 -13.57644 -13.30571 -13.20620 -13.13811 -12.92877 -12.84193 -12.72927 -12.66172 -12.44210 -12.27039 -12.15629 -12.12425 -12.06148 -12.03155 -11.83590 -11.48314 -11.33597 -11.17777 -10.82287 -10.55962 -9.62829 -9.49832 -9.44006 -8.87906 -7.82212 -5.17884 0.46137 0.52030 1.47659 1.50073 1.56151 1.67343 2.04088 2.49824 2.88529 3.34793 3.38224 3.43588 3.58944 3.65398 3.78268 3.90807 3.94115 3.99916 4.03175 4.06014 4.20583 4.21216 4.25515 4.33414 4.45112 4.50115 4.55228 4.63574 4.65400 4.76974 4.78585 4.80918 4.89787 4.90800 4.95116 5.01861 5.04422 5.07873 5.14246 5.16087 5.20430 5.22727 5.28470 5.35332 5.46679 5.56223 5.62848 5.64911 5.66574 5.77664 6.10984 6.16361 6.71818 7.04385 7.21818 7.73108 8.43859 9.28463 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017015 B = 0.003707 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.186000 B = 7551.214453 C = 8310.338232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.026 4.026 3 C 0.537 3.463 4 O -0.590 6.590 5 N -0.604 5.604 6 C 0.083 3.917 7 C 0.134 3.866 8 H 0.137 0.863 9 C -0.130 4.130 10 C 0.097 3.903 11 H 0.106 0.894 12 C 0.192 3.808 13 N -0.614 5.614 14 C -0.229 4.229 15 H 0.096 0.904 16 C -0.069 4.069 17 N -0.956 5.956 18 Si 0.974 3.026 19 H -0.275 1.275 20 H -0.305 1.305 21 H -0.275 1.275 22 C -0.109 4.109 23 C -0.122 4.122 24 C -0.074 4.074 25 C -0.086 4.086 26 C -0.133 4.133 27 C -0.123 4.123 28 C -0.133 4.133 29 C -0.115 4.115 30 C -0.065 4.065 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.013 0.987 39 H -0.004 1.004 40 H 0.242 0.758 41 H 0.068 0.932 42 H 0.101 0.899 43 H 0.022 0.978 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.100 0.900 47 H 0.138 0.862 48 H 0.147 0.853 49 H 0.142 0.858 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.080 -11.657 -12.473 20.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.030 4.030 3 C 0.326 3.674 4 O -0.471 6.471 5 N -0.336 5.336 6 C -0.040 4.040 7 C 0.027 3.973 8 H 0.154 0.846 9 C -0.169 4.169 10 C -0.006 4.006 11 H 0.124 0.876 12 C 0.066 3.934 13 N -0.338 5.338 14 C -0.358 4.358 15 H 0.114 0.886 16 C -0.261 4.261 17 N -0.606 5.606 18 Si 0.803 3.197 19 H -0.201 1.201 20 H -0.232 1.232 21 H -0.201 1.201 22 C -0.146 4.146 23 C -0.160 4.160 24 C -0.110 4.110 25 C -0.086 4.086 26 C -0.151 4.151 27 C -0.140 4.140 28 C -0.151 4.151 29 C -0.133 4.133 30 C -0.066 4.066 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.032 0.968 39 H 0.014 0.986 40 H 0.051 0.949 41 H 0.087 0.913 42 H 0.120 0.880 43 H 0.041 0.959 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.118 0.882 47 H 0.156 0.844 48 H 0.164 0.836 49 H 0.160 0.840 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.490 -11.521 -12.787 20.157 hybrid contribution 1.366 0.493 1.097 1.820 sum -9.125 -11.029 -11.690 18.481 Atomic orbital electron populations 1.22166 0.89927 1.04026 1.04014 1.19595 0.98785 0.89555 0.95015 1.20630 0.79897 0.87248 0.79578 1.90634 1.38800 1.78929 1.38693 1.49157 1.41827 1.13748 1.28893 1.23581 0.91702 0.99918 0.88835 1.23637 0.90480 0.92059 0.91088 0.84575 1.24060 0.95654 0.98652 0.98576 1.24101 0.97571 0.82653 0.96302 0.87641 1.21456 0.89630 0.96835 0.85487 1.45452 1.01915 1.84940 1.01509 1.19492 0.93104 1.41271 0.81905 0.88597 1.25617 0.95607 1.03099 1.01823 1.70163 0.97924 1.58010 1.34457 0.85205 0.75816 0.78337 0.80298 1.20130 1.23188 1.20080 1.21745 0.95592 1.01781 0.95485 1.21505 0.96715 0.98319 0.99431 1.20471 0.99755 0.99307 0.91499 1.19833 0.95358 0.97133 0.96273 1.21375 1.00874 1.00807 0.92033 1.21383 0.95891 0.98267 0.98490 1.21329 0.97995 0.97574 0.98230 1.21286 1.00246 0.99306 0.92470 1.19155 0.96449 0.96997 0.93957 0.91830 0.89615 0.89481 0.91895 0.87628 0.88068 0.90328 0.96840 0.98582 0.94875 0.91306 0.88014 0.95896 0.90842 0.90614 0.88215 0.84381 0.83571 0.84025 0.86127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 6.93 71.98 0.50 -2.53 16 2 C -0.03 -0.76 0.38 -53.78 -0.02 -0.78 16 3 C 0.54 19.91 5.42 87.66 0.48 20.38 16 4 O -0.59 -26.67 16.23 -3.04 -0.05 -26.72 16 5 N -0.60 -21.72 2.91 -768.31 -2.24 -23.95 16 6 C 0.08 2.53 4.46 87.16 0.39 2.92 16 7 C 0.13 4.49 5.53 46.93 0.26 4.75 16 8 H 0.14 3.79 8.14 -2.39 -0.02 3.77 16 9 C -0.13 -4.10 6.81 33.47 0.23 -3.88 16 10 C 0.10 3.84 5.24 46.93 0.25 4.09 16 11 H 0.11 4.27 8.06 -2.39 -0.02 4.25 16 12 C 0.19 9.62 4.76 87.16 0.42 10.04 16 13 N -0.61 -28.93 3.02 -648.55 -1.96 -30.88 16 14 C -0.23 -11.91 10.37 84.03 0.87 -11.04 16 15 H 0.10 4.57 7.83 -2.91 -0.02 4.55 16 16 C -0.07 -3.82 5.49 84.86 0.47 -3.35 16 17 N -0.96 -58.04 10.56 21.65 0.23 -57.82 16 18 Si 0.97 44.80 29.55 68.60 2.03 46.83 16 19 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 20 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 22 C -0.11 -3.06 4.54 30.62 0.14 -2.92 16 23 C -0.12 -3.83 5.93 30.62 0.18 -3.65 16 24 C -0.07 -1.87 5.67 29.74 0.17 -1.70 16 25 C -0.09 -2.36 5.73 -19.88 -0.11 -2.48 16 26 C -0.13 -3.10 9.61 22.36 0.21 -2.89 16 27 C -0.12 -2.59 10.05 22.20 0.22 -2.37 16 28 C -0.13 -3.00 10.05 22.20 0.22 -2.78 16 29 C -0.12 -3.04 8.77 22.38 0.20 -2.85 16 30 C -0.07 -1.89 3.97 -19.86 -0.08 -1.97 16 31 H 0.06 1.30 7.00 -2.39 -0.02 1.28 16 32 H 0.08 1.49 8.06 -2.39 -0.02 1.47 16 33 H 0.09 1.63 4.94 -2.39 -0.01 1.61 16 34 H 0.06 2.14 5.77 -2.39 -0.01 2.12 16 35 H 0.11 2.33 5.81 -2.39 -0.01 2.32 16 36 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.01 0.77 7.46 -2.39 -0.02 0.75 16 39 H 0.00 -0.24 7.68 -2.38 -0.02 -0.26 16 40 H 0.24 14.61 8.31 -92.70 -0.77 13.83 16 41 H 0.07 2.17 5.08 -2.39 -0.01 2.16 16 42 H 0.10 2.27 8.08 -2.38 -0.02 2.25 16 43 H 0.02 0.91 7.19 -2.39 -0.02 0.89 16 44 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.08 1.85 8.13 -2.39 -0.02 1.83 16 46 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 47 H 0.14 2.53 8.05 -2.91 -0.02 2.51 16 48 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 49 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 50 H 0.12 2.95 6.65 -2.91 -0.02 2.93 16 Total: -1.00 -74.05 374.25 3.94 -70.11 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.94 Total: 25.42 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: 4.98 Total: -2.99 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -3.97 Total: -112.65 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.05 Total: -26.72 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -74.05 3.94 -70.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032685739.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.087 kcal (2) G-P(sol) polarization free energy of solvation -74.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds