Wall clock time and date at job start Sat Apr 11 2020 06:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38233 * 120.00398 * 2 1 4 4 C 1.38231 * 120.00508 * 180.02562 * 3 2 1 5 5 C 1.38234 * 119.99904 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00000 * 179.97438 * 5 4 3 7 7 C 1.50692 * 112.85378 * 294.53820 * 6 5 4 8 8 O 1.21282 * 120.00496 * 116.72226 * 7 6 5 9 9 N 1.34776 * 119.99934 * 296.72373 * 7 6 5 10 10 C 1.48043 * 126.94710 * 355.06473 * 9 7 6 11 11 C 1.56023 * 105.10570 * 182.05014 * 10 9 7 12 12 H 1.08993 * 116.89332 * 159.14989 * 11 10 9 13 13 C 1.57082 * 99.60604 * 32.74677 * 11 10 9 14 14 C 1.49292 * 126.94604 * 175.12030 * 9 7 6 15 15 H 1.08996 * 116.79101 * 16.31151 * 14 9 7 16 16 C 1.56024 * 104.09120 * 246.70673 * 14 9 7 17 17 N 1.47868 * 105.10160 * 288.76738 * 16 14 9 18 18 C 1.36937 * 126.94065 * 181.99362 * 17 16 14 19 19 H 1.08003 * 120.00069 * 179.97438 * 18 17 16 20 20 C 1.38816 * 120.00271 * 359.97112 * 18 17 16 21 21 N 1.31619 * 119.99988 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99958 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47167 * 90.00072 * 22 20 18 24 24 H 1.48499 * 109.46740 * 210.00039 * 22 20 18 25 25 H 1.48497 * 109.47150 * 329.99944 * 22 20 18 26 26 C 1.53791 * 113.61213 * 65.73438 * 6 5 4 27 27 C 1.54046 * 86.98634 * 140.01837 * 26 6 5 28 28 C 1.53778 * 87.08034 * 334.56686 * 27 26 6 29 29 C 1.38233 * 119.99722 * 0.26335 * 5 4 3 30 30 C 1.38229 * 120.00408 * 359.46181 * 29 5 4 31 31 H 1.09002 * 109.47087 * 90.00498 * 1 2 3 32 32 H 1.08999 * 109.47203 * 209.99567 * 1 2 3 33 33 H 1.08991 * 109.47417 * 330.00458 * 1 2 3 34 34 H 1.08002 * 119.99764 * 359.97384 * 3 2 1 35 35 H 1.08003 * 119.99879 * 179.97438 * 4 3 2 36 36 H 1.09000 * 110.36185 * 63.11354 * 10 9 7 37 37 H 1.08999 * 110.34761 * 300.97786 * 10 9 7 38 38 H 1.09002 * 112.36646 * 191.71558 * 13 11 10 39 39 H 1.09003 * 112.36684 * 64.36171 * 13 11 10 40 40 H 1.09005 * 110.31364 * 47.67320 * 16 14 9 41 41 H 1.08998 * 110.31829 * 169.85993 * 16 14 9 42 42 H 0.96995 * 120.00134 * 179.97438 * 21 20 18 43 43 H 1.08998 * 113.60975 * 254.61183 * 26 6 5 44 44 H 1.08996 * 113.61397 * 25.51097 * 26 6 5 45 45 H 1.08995 * 113.62009 * 220.02401 * 27 26 6 46 46 H 1.09001 * 113.61620 * 89.11336 * 27 26 6 47 47 H 1.09000 * 113.61719 * 270.88684 * 28 27 26 48 48 H 1.09000 * 113.69574 * 139.98403 * 28 27 26 49 49 H 1.08005 * 119.99595 * 179.72882 * 29 5 4 50 50 H 1.08002 * 120.00598 * 180.27484 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 5.7787 0.0000 -0.0017 7 6 6.3629 0.5761 -1.2656 8 8 7.0337 1.5854 -1.2186 9 7 6.1401 -0.0302 -2.4485 10 6 5.4364 -1.3134 -2.6720 11 6 5.5165 -1.5584 -4.2108 12 1 5.3799 -2.5836 -4.5546 13 6 6.9106 -0.8987 -4.5090 14 6 6.5539 0.4558 -3.7980 15 1 7.3147 1.2357 -3.8273 16 6 5.2064 0.7791 -4.5150 17 7 4.5902 -0.5369 -4.7888 18 6 3.4094 -0.7731 -5.4409 19 1 3.0628 -1.7864 -5.5802 20 6 2.6579 0.2899 -5.9228 21 7 3.0805 1.5249 -5.7534 22 14 1.0468 -0.0323 -6.8116 23 1 -0.0660 -0.0501 -5.8285 24 1 0.8087 1.0414 -7.8094 25 1 1.1171 -1.3444 -7.5036 26 6 6.3956 0.5797 1.2822 27 6 7.4432 -0.5460 1.1900 28 6 6.3950 -1.3497 0.4025 29 6 3.5805 -1.1971 -0.0055 30 6 2.1982 -1.1972 0.0008 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5137 34 1 1.6582 2.1324 -0.0004 35 1 4.1205 2.1325 -0.0010 36 1 4.3965 -1.2360 -2.3547 37 1 5.9366 -2.1187 -2.1340 38 1 7.0897 -0.7722 -5.5768 39 1 7.7307 -1.4219 -4.0172 40 1 4.5630 1.3699 -3.8629 41 1 5.3922 1.3114 -5.4478 42 1 2.5556 2.2676 -6.0904 43 1 6.8132 1.5782 1.1536 44 1 5.7453 0.5007 2.1534 45 1 7.6969 -0.9865 2.1542 46 1 8.3209 -0.2786 0.6016 47 1 5.7445 -1.9552 1.0336 48 1 6.8108 -1.9084 -0.4360 49 1 4.1205 -2.1324 -0.0099 50 1 1.6581 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032811161.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:00 Heat of formation + Delta-G solvation = 69.723842 kcal Electronic energy + Delta-G solvation = -31709.538038 eV Core-core repulsion = 27896.908152 eV Total energy + Delta-G solvation = -3812.629886 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.98131 -39.31343 -38.32827 -36.62405 -33.59569 -32.62663 -31.44924 -30.75760 -29.12661 -28.55459 -27.77229 -25.77734 -25.24086 -24.81510 -23.36968 -22.29813 -21.34980 -20.93611 -19.91172 -19.27190 -18.17218 -17.17539 -16.59490 -15.94803 -15.76480 -15.23809 -15.04205 -14.83814 -14.43730 -14.24569 -13.95233 -13.59183 -13.52464 -13.25065 -13.16121 -12.85678 -12.41861 -12.34333 -12.18625 -12.03845 -11.81337 -11.73778 -11.50405 -11.38268 -11.24971 -11.03692 -10.89766 -10.85048 -10.79530 -10.73059 -10.56846 -10.30075 -10.23240 -10.17790 -10.05523 -9.61465 -9.41799 -8.70304 -8.63854 -8.18632 -7.93557 -6.89435 -5.74378 -3.08215 1.53728 1.66757 3.03398 3.37013 3.40533 3.41825 3.44357 3.94840 4.42947 4.53416 4.65398 4.67790 4.83231 4.88789 5.06519 5.09529 5.16907 5.22346 5.24916 5.37680 5.46093 5.51578 5.58697 5.62163 5.68455 5.69715 5.70821 5.74808 5.79397 5.83286 5.91001 5.94576 6.00713 6.11911 6.15396 6.22941 6.28850 6.29885 6.31167 6.37083 6.43379 6.55484 6.61201 6.66255 6.73576 6.82456 6.83410 7.23842 7.43819 7.51848 7.73814 8.11235 8.15790 8.63256 9.12381 9.73417 10.42898 11.37742 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009679 B = 0.005607 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.129172 B = 4992.136611 C = 6829.125448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.085 4.085 3 C -0.114 4.114 4 C -0.099 4.099 5 C -0.065 4.065 6 C -0.060 4.060 7 C 0.557 3.443 8 O -0.554 6.554 9 N -0.596 5.596 10 C 0.084 3.916 11 C 0.138 3.862 12 H 0.105 0.895 13 C -0.152 4.152 14 C 0.096 3.904 15 H 0.112 0.888 16 C 0.177 3.823 17 N -0.595 5.595 18 C -0.228 4.228 19 H 0.079 0.921 20 C -0.004 4.004 21 N -0.918 5.918 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.112 4.112 27 C -0.139 4.139 28 C -0.126 4.126 29 C -0.106 4.106 30 C -0.118 4.118 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.078 0.922 37 H 0.051 0.949 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.253 0.747 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.092 0.908 48 H 0.074 0.926 49 H 0.121 0.879 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.151 -6.786 13.702 15.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.085 4.085 3 C -0.132 4.132 4 C -0.117 4.117 5 C -0.066 4.066 6 C -0.063 4.063 7 C 0.345 3.655 8 O -0.433 6.433 9 N -0.328 5.328 10 C -0.041 4.041 11 C 0.029 3.971 12 H 0.123 0.877 13 C -0.191 4.191 14 C -0.007 4.007 15 H 0.130 0.870 16 C 0.052 3.948 17 N -0.319 5.319 18 C -0.356 4.356 19 H 0.097 0.903 20 C -0.201 4.201 21 N -0.565 5.565 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.150 4.150 27 C -0.177 4.177 28 C -0.164 4.164 29 C -0.123 4.123 30 C -0.136 4.136 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.089 0.911 46 H 0.100 0.900 47 H 0.111 0.889 48 H 0.092 0.908 49 H 0.139 0.861 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.286 -6.058 13.656 15.296 hybrid contribution -1.071 -0.007 -0.609 1.232 sum 2.215 -6.065 13.047 14.557 Atomic orbital electron populations 1.20779 0.91516 1.02156 1.02560 1.19871 0.95915 0.93274 0.99431 1.20941 0.93981 0.97504 1.00733 1.20920 0.94139 0.97622 0.99018 1.19222 0.92666 0.93555 1.01121 1.20819 0.92009 0.99070 0.94448 1.19246 0.79756 0.83501 0.82987 1.90636 1.40887 1.25623 1.86170 1.49085 1.54955 1.23331 1.05438 1.23426 0.97063 0.83895 0.99699 1.23233 0.89512 0.94624 0.89702 0.87713 1.24155 0.97673 0.96686 1.00617 1.24337 0.99375 0.96710 0.80228 0.86982 1.21893 0.87957 0.87634 0.97329 1.45245 1.21190 1.00075 1.65410 1.19011 0.95240 0.92839 1.28528 0.90318 1.24777 0.98904 0.95275 1.01139 1.69913 1.38666 0.97432 1.50509 0.86166 0.83632 0.77082 0.79150 1.21677 1.21718 1.20666 1.22883 0.97199 0.99918 0.94983 1.22859 0.97271 0.97093 1.00445 1.23064 0.98031 0.94913 1.00364 1.20919 0.94010 0.97218 1.00201 1.20913 0.93975 0.97356 1.01324 0.90945 0.91843 0.91864 0.86349 0.86412 0.90411 0.93084 0.89853 0.91774 0.93543 0.92776 0.93683 0.89830 0.89562 0.91146 0.90014 0.88943 0.90775 0.86081 0.86284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.01 36.00 0.36 -1.00 16 2 C -0.08 -1.24 5.88 -104.62 -0.62 -1.86 16 3 C -0.11 -1.77 9.70 -39.59 -0.38 -2.16 16 4 C -0.10 -1.63 9.46 -39.59 -0.37 -2.01 16 5 C -0.07 -1.01 4.06 -104.63 -0.42 -1.44 16 6 C -0.06 -0.90 0.53 -156.00 -0.08 -0.98 16 7 C 0.56 10.40 6.41 -10.99 -0.07 10.33 16 8 O -0.55 -11.88 16.28 5.56 0.09 -11.79 16 9 N -0.60 -11.19 2.95 -156.64 -0.46 -11.65 16 10 C 0.08 1.47 5.19 -1.58 -0.01 1.46 16 11 C 0.14 2.58 5.54 -62.42 -0.35 2.24 16 12 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 13 C -0.15 -2.61 6.80 -22.30 -0.15 -2.76 16 14 C 0.10 1.90 5.24 -62.55 -0.33 1.57 16 15 H 0.11 2.17 8.07 -51.93 -0.42 1.75 16 16 C 0.18 4.30 4.76 -1.67 -0.01 4.29 16 17 N -0.59 -14.32 3.02 -156.16 -0.47 -14.79 16 18 C -0.23 -6.07 10.38 -15.06 -0.16 -6.23 16 19 H 0.08 2.01 7.83 -52.48 -0.41 1.59 16 20 C 0.00 -0.12 5.49 -17.43 -0.10 -0.21 16 21 N -0.92 -26.85 10.56 55.49 0.59 -26.27 16 22 Si 0.91 21.80 29.55 -169.99 -5.02 16.77 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 26 C -0.11 -1.47 6.99 -25.77 -0.18 -1.65 16 27 C -0.14 -1.61 7.81 -25.78 -0.20 -1.81 16 28 C -0.13 -1.50 5.86 -25.92 -0.15 -1.65 16 29 C -0.11 -1.49 7.40 -39.59 -0.29 -1.78 16 30 C -0.12 -1.65 9.70 -39.58 -0.38 -2.04 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 33 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 34 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.12 1.98 8.06 -52.48 -0.42 1.56 16 36 H 0.08 1.53 6.11 -51.93 -0.32 1.21 16 37 H 0.05 0.74 6.41 -51.93 -0.33 0.41 16 38 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.05 1.31 7.68 -51.93 -0.40 0.91 16 41 H 0.05 1.45 7.46 -51.93 -0.39 1.06 16 42 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.08 1.23 7.34 -51.93 -0.38 0.84 16 44 H 0.09 1.00 8.09 -51.93 -0.42 0.58 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.09 0.94 6.79 -51.93 -0.35 0.59 16 48 H 0.07 0.89 6.36 -51.93 -0.33 0.56 16 49 H 0.12 1.46 6.41 -52.48 -0.34 1.12 16 50 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 386.95 15.07 5.83 5.83 Total: -1.00 -31.68 386.95 -11.21 -42.89 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -7.87 Total: 6.70 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -3.89 Total: -7.69 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: -0.35 Total: -52.72 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.09 Total: -11.79 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.68 -11.21 -42.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032811161.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.610 kcal (2) G-P(sol) polarization free energy of solvation -31.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds