Wall clock time and date at job start Sat Apr 11 2020 06:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.67875 * 2 1 4 4 O 1.21278 * 119.99887 * 120.09047 * 3 2 1 5 5 N 1.34777 * 120.00013 * 300.09076 * 3 2 1 6 6 C 1.49066 * 127.54452 * 355.98945 * 5 3 2 7 7 C 1.56024 * 105.20679 * 182.02965 * 6 5 3 8 8 H 1.08999 * 116.24878 * 158.16128 * 7 6 5 9 9 C 1.57088 * 99.60399 * 32.12912 * 7 6 5 10 10 C 1.49293 * 126.94225 * 174.78698 * 5 3 2 11 11 H 1.09000 * 116.15543 * 16.68430 * 10 5 3 12 12 C 1.56020 * 104.86659 * 246.87983 * 10 5 3 13 13 N 1.49059 * 105.20925 * 287.91046 * 12 10 5 14 14 C 1.36937 * 127.54455 * 182.01059 * 13 12 10 15 15 H 1.08005 * 120.00383 * 181.22366 * 14 13 12 16 16 C 1.38812 * 119.99976 * 1.22238 * 14 13 12 17 17 N 1.31619 * 119.99980 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00081 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46953 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47204 * 119.99785 * 18 16 14 21 21 H 1.48498 * 109.46765 * 240.00287 * 18 16 14 22 22 C 1.53327 * 109.68578 * 239.48135 * 2 1 3 23 23 C 1.52730 * 108.39929 * 170.37382 * 22 2 1 24 24 C 1.50628 * 110.59965 * 51.05205 * 23 22 2 25 25 C 1.38914 * 117.75500 * 162.33201 * 24 23 22 26 26 C 1.37931 * 120.54212 * 179.75019 * 25 24 23 27 27 C 1.38266 * 119.77789 * 359.95869 * 26 25 24 28 28 C 1.37941 * 119.76756 * 0.13614 * 27 26 25 29 29 C 1.37660 * 122.56372 * 342.27634 * 24 23 22 30 30 C 1.50714 * 122.58023 * 0.71337 * 29 24 23 31 31 H 1.08998 * 109.47275 * 67.94665 * 1 2 3 32 32 H 1.09007 * 109.46959 * 187.94035 * 1 2 3 33 33 H 1.08995 * 109.47473 * 307.94350 * 1 2 3 34 34 H 1.08995 * 110.83687 * 62.78874 * 6 5 3 35 35 H 1.09004 * 109.69206 * 300.67701 * 6 5 3 36 36 H 1.09005 * 112.36041 * 191.71327 * 9 7 6 37 37 H 1.08999 * 112.44590 * 64.30074 * 9 7 6 38 38 H 1.09003 * 110.31880 * 47.49590 * 12 10 5 39 39 H 1.09002 * 110.31404 * 169.67530 * 12 10 5 40 40 H 0.96999 * 119.99929 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.67664 * 290.10100 * 22 2 1 42 42 H 1.08999 * 109.67885 * 50.60934 * 22 2 1 43 43 H 1.08999 * 109.25210 * 171.33956 * 23 22 2 44 44 H 1.09000 * 109.25059 * 290.80028 * 23 22 2 45 45 H 1.07998 * 119.72818 * 359.70905 * 25 24 23 46 46 H 1.08003 * 120.10869 * 179.97438 * 26 25 24 47 47 H 1.07994 * 120.11976 * 180.11345 * 27 26 25 48 48 H 1.07999 * 119.72743 * 180.02562 * 28 27 26 49 49 H 1.08998 * 109.31421 * 221.90122 * 30 29 24 50 50 H 1.09009 * 109.24222 * 102.44481 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0374 1.4190 0.0000 4 8 2.7375 1.8127 0.9088 5 7 1.7134 2.2506 -1.0099 6 6 0.9401 1.9251 -2.2421 7 6 0.9167 3.2464 -3.0715 8 1 0.7329 3.1412 -4.1407 9 6 2.3091 3.8423 -2.6546 10 6 2.0363 3.7045 -1.1138 11 1 2.8160 4.0724 -0.4469 12 6 0.6567 4.4281 -1.0279 13 7 -0.0135 4.1480 -2.3294 14 6 -1.2348 4.5996 -2.7534 15 1 -1.6146 4.3029 -3.7199 16 6 -1.9848 5.4387 -1.9408 17 7 -1.5223 5.7998 -0.7626 18 14 -3.6512 6.0542 -2.5187 19 1 -3.9400 5.5068 -3.8686 20 1 -4.7008 5.6076 -1.5680 21 1 -3.6369 7.5378 -2.5794 22 6 2.0465 -0.7331 -1.2437 23 6 3.5542 -0.5104 -1.3431 24 6 4.2264 -0.8435 -0.0369 25 6 5.5985 -1.0596 -0.0522 26 6 6.2732 -1.3631 1.1119 27 6 5.5793 -1.4526 2.3044 28 6 4.2164 -1.2404 2.3213 29 6 3.5346 -0.9374 1.1495 30 6 2.0445 -0.7303 1.2388 31 1 -0.3634 0.3858 -0.9524 32 1 -0.3633 -1.0179 0.1420 33 1 -0.3634 0.6319 0.8104 34 1 -0.0751 1.6168 -1.9926 35 1 1.4496 1.1381 -2.7982 36 1 2.4250 4.8811 -2.9641 37 1 3.1427 3.2229 -2.9853 38 1 0.0724 4.0315 -0.1976 39 1 0.7995 5.5025 -0.9119 40 1 -2.0463 6.3865 -0.1950 41 1 1.8380 -1.7992 -1.1543 42 1 1.5569 -0.3367 -2.1332 43 1 3.9604 -1.1472 -2.1290 44 1 3.7477 0.5334 -1.5904 45 1 6.1413 -0.9899 -0.9832 46 1 7.3401 -1.5302 1.0919 47 1 6.1023 -1.6882 3.2194 48 1 3.6751 -1.3100 3.2533 49 1 1.8151 -0.1394 2.1256 50 1 1.5511 -1.6992 1.3157 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032823870.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:09 Heat of formation + Delta-G solvation = 45.007001 kcal Electronic energy + Delta-G solvation = -31418.064647 eV Core-core repulsion = 27604.362958 eV Total energy + Delta-G solvation = -3813.701689 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.97910 -39.45664 -37.93110 -35.89593 -33.58169 -32.77693 -31.90206 -30.86697 -29.24476 -28.86475 -28.49875 -26.49067 -25.25804 -24.12550 -23.49914 -22.31723 -22.04045 -20.93973 -19.87709 -19.26598 -18.22179 -16.81140 -16.46860 -16.03322 -15.78831 -15.47979 -15.20694 -14.69898 -14.52666 -14.10879 -14.10232 -13.81497 -13.45434 -13.27543 -12.94271 -12.85472 -12.71872 -12.43790 -12.18411 -12.09700 -11.84324 -11.81912 -11.57944 -11.51433 -11.30594 -11.21093 -11.07423 -10.96125 -10.86290 -10.73360 -10.57176 -10.38890 -10.31234 -10.10486 -10.04547 -9.62524 -9.21112 -8.73079 -8.65546 -8.42894 -7.92870 -6.93824 -5.78773 -3.12762 1.45806 1.48420 3.13900 3.35369 3.40479 3.43157 3.43740 3.83158 4.39676 4.49758 4.62296 4.66810 4.94632 4.98597 5.00486 5.06001 5.13211 5.19476 5.24088 5.35362 5.37820 5.42453 5.54413 5.56033 5.57452 5.65478 5.70336 5.75966 5.78927 5.80577 5.83904 5.86995 5.96543 6.05145 6.06441 6.16060 6.18999 6.24652 6.30514 6.39942 6.43048 6.54749 6.56021 6.57462 6.59747 6.73468 6.77338 7.10762 7.39915 7.46368 7.68914 8.05599 8.17223 8.69667 9.06491 9.69063 10.39393 11.33929 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022098 B = 0.003207 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.782468 B = 8728.824889 C = 8929.768728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.074 4.074 3 C 0.543 3.457 4 O -0.548 6.548 5 N -0.606 5.606 6 C 0.078 3.922 7 C 0.139 3.861 8 H 0.104 0.896 9 C -0.151 4.151 10 C 0.098 3.902 11 H 0.110 0.890 12 C 0.173 3.827 13 N -0.596 5.596 14 C -0.229 4.229 15 H 0.081 0.919 16 C -0.006 4.006 17 N -0.918 5.918 18 Si 0.911 3.089 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C -0.114 4.114 23 C -0.084 4.084 24 C -0.072 4.072 25 C -0.121 4.121 26 C -0.129 4.129 27 C -0.125 4.125 28 C -0.118 4.118 29 C -0.050 4.050 30 C -0.058 4.058 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.045 0.955 39 H 0.057 0.943 40 H 0.253 0.747 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.117 0.883 48 H 0.117 0.883 49 H 0.083 0.917 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.694 -15.869 -0.471 19.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.077 4.077 3 C 0.331 3.669 4 O -0.426 6.426 5 N -0.340 5.340 6 C -0.047 4.047 7 C 0.030 3.970 8 H 0.122 0.878 9 C -0.190 4.190 10 C -0.004 4.004 11 H 0.128 0.872 12 C 0.049 3.951 13 N -0.321 5.321 14 C -0.357 4.357 15 H 0.099 0.901 16 C -0.203 4.203 17 N -0.565 5.565 18 Si 0.742 3.258 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.151 4.151 23 C -0.121 4.121 24 C -0.072 4.072 25 C -0.139 4.139 26 C -0.147 4.147 27 C -0.143 4.143 28 C -0.136 4.136 29 C -0.050 4.050 30 C -0.096 4.096 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.135 0.865 48 H 0.135 0.865 49 H 0.101 0.899 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.857 -15.542 0.174 18.959 hybrid contribution -0.910 0.427 -0.045 1.006 sum 9.947 -15.115 0.129 18.095 Atomic orbital electron populations 1.21959 0.92145 1.02311 1.03940 1.20743 0.97122 0.92875 0.96986 1.19821 0.79869 0.86326 0.80860 1.90665 1.38578 1.77319 1.36010 1.49400 1.54070 1.10291 1.20231 1.23791 0.95614 0.99397 0.85857 1.23169 0.89711 0.88758 0.95411 0.87815 1.24151 0.97700 1.01512 0.95684 1.24245 0.99650 0.80294 0.96235 0.87217 1.22095 0.87102 0.97691 0.88246 1.45504 1.17665 1.54343 1.14572 1.19074 0.92093 1.23537 1.01004 0.90105 1.24810 0.98858 1.00067 0.96545 1.69918 1.37768 1.38845 1.09960 0.86065 0.83673 0.78412 0.77689 1.20472 1.21816 1.21768 1.21788 0.95263 1.00626 0.97407 1.20512 0.94957 1.02224 0.94448 1.19529 0.93577 0.99494 0.94639 1.21073 0.93810 1.00770 0.98238 1.20960 0.99431 1.01396 0.92927 1.20982 0.94385 1.01134 0.97785 1.21084 0.94504 1.00461 0.97556 1.19474 0.95445 0.97554 0.92518 1.20393 0.91462 0.99836 0.97864 0.90738 0.91818 0.91952 0.90529 0.92400 0.89967 0.91840 0.93697 0.92492 0.93666 0.90805 0.89887 0.90659 0.90439 0.86602 0.86542 0.86496 0.86456 0.89859 0.90223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.27 37.16 0.31 -1.64 16 2 C -0.07 -1.03 0.50 -155.63 -0.08 -1.11 16 3 C 0.54 9.65 4.71 -10.98 -0.05 9.60 16 4 O -0.55 -11.59 15.49 5.56 0.09 -11.51 16 5 N -0.61 -10.73 2.99 -155.81 -0.47 -11.19 16 6 C 0.08 1.25 4.73 -1.00 0.00 1.25 16 7 C 0.14 2.48 5.48 -62.55 -0.34 2.14 16 8 H 0.10 1.67 8.14 -51.93 -0.42 1.24 16 9 C -0.15 -2.52 6.79 -22.30 -0.15 -2.67 16 10 C 0.10 1.89 5.20 -62.55 -0.33 1.57 16 11 H 0.11 2.12 8.04 -51.93 -0.42 1.71 16 12 C 0.17 4.09 4.84 -1.01 0.00 4.09 16 13 N -0.60 -13.95 3.08 -155.37 -0.48 -14.43 16 14 C -0.23 -5.96 10.38 -15.06 -0.16 -6.11 16 15 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 16 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 17 N -0.92 -26.43 10.66 55.49 0.59 -25.84 16 18 Si 0.91 21.42 29.55 -169.99 -5.02 16.40 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 22 C -0.11 -1.31 4.54 -26.70 -0.12 -1.43 16 23 C -0.08 -1.03 5.17 -28.06 -0.15 -1.17 16 24 C -0.07 -0.98 5.50 -104.62 -0.58 -1.56 16 25 C -0.12 -1.50 9.61 -39.44 -0.38 -1.88 16 26 C -0.13 -1.50 10.05 -39.68 -0.40 -1.90 16 27 C -0.12 -1.48 10.05 -39.68 -0.40 -1.88 16 28 C -0.12 -1.53 9.61 -39.44 -0.38 -1.91 16 29 C -0.05 -0.70 4.78 -104.58 -0.50 -1.20 16 30 C -0.06 -0.78 4.09 -28.01 -0.11 -0.89 16 31 H 0.07 1.03 5.04 -51.93 -0.26 0.77 16 32 H 0.06 0.68 8.06 -51.93 -0.42 0.26 16 33 H 0.06 0.94 8.13 -51.93 -0.42 0.51 16 34 H 0.08 1.33 5.81 -51.93 -0.30 1.03 16 35 H 0.06 0.76 5.82 -51.93 -0.30 0.45 16 36 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.04 1.22 7.77 -51.93 -0.40 0.81 16 39 H 0.06 1.50 7.44 -51.93 -0.39 1.11 16 40 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 42 H 0.08 0.91 4.99 -51.93 -0.26 0.65 16 43 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 44 H 0.08 1.08 7.29 -51.93 -0.38 0.70 16 45 H 0.12 1.20 8.05 -52.49 -0.42 0.78 16 46 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 47 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 48 H 0.12 1.32 8.05 -52.49 -0.42 0.90 16 49 H 0.08 1.22 7.81 -51.93 -0.41 0.81 16 50 H 0.08 0.87 8.06 -51.92 -0.42 0.45 16 LS Contribution 376.15 15.07 5.67 5.67 Total: -1.00 -31.57 376.15 -11.26 -42.83 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -7.72 Total: 5.04 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -3.92 Total: -6.97 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.35 Total: -51.47 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.09 Total: -11.51 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.57 -11.26 -42.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032823870.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.841 kcal (2) G-P(sol) polarization free energy of solvation -31.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds