Wall clock time and date at job start Sat Apr 11 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.67875 * 2 1 4 4 O 1.21278 * 119.99887 * 120.09047 * 3 2 1 5 5 N 1.34777 * 120.00013 * 300.09076 * 3 2 1 6 6 C 1.49066 * 127.54452 * 355.98945 * 5 3 2 7 7 C 1.56024 * 105.20679 * 182.02965 * 6 5 3 8 8 H 1.08999 * 116.24878 * 158.16128 * 7 6 5 9 9 C 1.57088 * 99.60399 * 32.12912 * 7 6 5 10 10 C 1.49293 * 126.94225 * 174.78698 * 5 3 2 11 11 H 1.09000 * 116.15543 * 16.68430 * 10 5 3 12 12 C 1.56020 * 104.86659 * 246.87983 * 10 5 3 13 13 N 1.49059 * 105.20925 * 287.91046 * 12 10 5 14 14 C 1.36937 * 127.54455 * 182.01059 * 13 12 10 15 15 H 1.08005 * 120.00383 * 181.22366 * 14 13 12 16 16 C 1.38812 * 119.99976 * 1.22238 * 14 13 12 17 17 N 1.31619 * 119.99980 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00081 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46953 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47204 * 119.99785 * 18 16 14 21 21 H 1.48498 * 109.46765 * 240.00287 * 18 16 14 22 22 C 1.53327 * 109.68578 * 239.48135 * 2 1 3 23 23 C 1.52730 * 108.39929 * 170.37382 * 22 2 1 24 24 C 1.50628 * 110.59965 * 51.05205 * 23 22 2 25 25 C 1.38914 * 117.75500 * 162.33201 * 24 23 22 26 26 C 1.37931 * 120.54212 * 179.75019 * 25 24 23 27 27 C 1.38266 * 119.77789 * 359.95869 * 26 25 24 28 28 C 1.37941 * 119.76756 * 0.13614 * 27 26 25 29 29 C 1.37660 * 122.56372 * 342.27634 * 24 23 22 30 30 C 1.50714 * 122.58023 * 0.71337 * 29 24 23 31 31 H 1.08998 * 109.47275 * 67.94665 * 1 2 3 32 32 H 1.09007 * 109.46959 * 187.94035 * 1 2 3 33 33 H 1.08995 * 109.47473 * 307.94350 * 1 2 3 34 34 H 1.08995 * 110.83687 * 62.78874 * 6 5 3 35 35 H 1.09004 * 109.69206 * 300.67701 * 6 5 3 36 36 H 1.09005 * 112.36041 * 191.71327 * 9 7 6 37 37 H 1.08999 * 112.44590 * 64.30074 * 9 7 6 38 38 H 1.09003 * 110.31880 * 47.49590 * 12 10 5 39 39 H 1.09002 * 110.31404 * 169.67530 * 12 10 5 40 40 H 0.96999 * 119.99929 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.67664 * 290.10100 * 22 2 1 42 42 H 1.08999 * 109.67885 * 50.60934 * 22 2 1 43 43 H 1.08999 * 109.25210 * 171.33956 * 23 22 2 44 44 H 1.09000 * 109.25059 * 290.80028 * 23 22 2 45 45 H 1.07998 * 119.72818 * 359.70905 * 25 24 23 46 46 H 1.08003 * 120.10869 * 179.97438 * 26 25 24 47 47 H 1.07994 * 120.11976 * 180.11345 * 27 26 25 48 48 H 1.07999 * 119.72743 * 180.02562 * 28 27 26 49 49 H 1.08998 * 109.31421 * 221.90122 * 30 29 24 50 50 H 1.09009 * 109.24222 * 102.44481 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0374 1.4190 0.0000 4 8 2.7375 1.8127 0.9088 5 7 1.7134 2.2506 -1.0099 6 6 0.9401 1.9251 -2.2421 7 6 0.9167 3.2464 -3.0715 8 1 0.7329 3.1412 -4.1407 9 6 2.3091 3.8423 -2.6546 10 6 2.0363 3.7045 -1.1138 11 1 2.8160 4.0724 -0.4469 12 6 0.6567 4.4281 -1.0279 13 7 -0.0135 4.1480 -2.3294 14 6 -1.2348 4.5996 -2.7534 15 1 -1.6146 4.3029 -3.7199 16 6 -1.9848 5.4387 -1.9408 17 7 -1.5223 5.7998 -0.7626 18 14 -3.6512 6.0542 -2.5187 19 1 -3.9400 5.5068 -3.8686 20 1 -4.7008 5.6076 -1.5680 21 1 -3.6369 7.5378 -2.5794 22 6 2.0465 -0.7331 -1.2437 23 6 3.5542 -0.5104 -1.3431 24 6 4.2264 -0.8435 -0.0369 25 6 5.5985 -1.0596 -0.0522 26 6 6.2732 -1.3631 1.1119 27 6 5.5793 -1.4526 2.3044 28 6 4.2164 -1.2404 2.3213 29 6 3.5346 -0.9374 1.1495 30 6 2.0445 -0.7303 1.2388 31 1 -0.3634 0.3858 -0.9524 32 1 -0.3633 -1.0179 0.1420 33 1 -0.3634 0.6319 0.8104 34 1 -0.0751 1.6168 -1.9926 35 1 1.4496 1.1381 -2.7982 36 1 2.4250 4.8811 -2.9641 37 1 3.1427 3.2229 -2.9853 38 1 0.0724 4.0315 -0.1976 39 1 0.7995 5.5025 -0.9119 40 1 -2.0463 6.3865 -0.1950 41 1 1.8380 -1.7992 -1.1543 42 1 1.5569 -0.3367 -2.1332 43 1 3.9604 -1.1472 -2.1290 44 1 3.7477 0.5334 -1.5904 45 1 6.1413 -0.9899 -0.9832 46 1 7.3401 -1.5302 1.0919 47 1 6.1023 -1.6882 3.2194 48 1 3.6751 -1.3100 3.2533 49 1 1.8151 -0.1394 2.1256 50 1 1.5511 -1.6992 1.3157 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032823870.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:08 Heat of formation + Delta-G solvation = 28.333433 kcal Electronic energy + Delta-G solvation = -31418.787667 eV Core-core repulsion = 27604.362958 eV Total energy + Delta-G solvation = -3814.424709 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.20016 -40.73667 -39.22938 -37.08688 -35.37567 -33.72325 -33.38110 -32.15514 -30.58233 -30.19658 -30.02040 -27.53135 -26.93822 -25.72845 -24.45135 -23.71223 -22.98809 -22.11969 -21.36050 -20.72028 -19.68314 -18.50892 -17.55074 -17.34755 -17.24735 -16.62879 -16.44035 -16.06605 -15.78853 -15.64382 -15.27963 -15.05843 -14.79172 -14.44277 -14.21586 -13.92450 -13.82280 -13.70754 -13.55074 -13.42683 -13.28014 -13.07184 -12.90011 -12.87370 -12.77142 -12.60183 -12.52685 -12.24392 -12.23061 -12.11332 -12.05011 -11.93169 -11.78452 -11.47373 -11.36277 -11.16561 -10.82366 -10.52331 -9.58860 -9.48178 -9.32055 -8.88802 -7.83424 -5.18377 0.53365 0.55623 1.47665 1.47889 1.58110 1.74919 2.05877 2.49228 2.90557 3.31921 3.37339 3.47282 3.56186 3.67868 3.80325 3.93819 4.00438 4.03764 4.09058 4.11791 4.21908 4.24395 4.28319 4.42033 4.45372 4.53378 4.59516 4.64302 4.70410 4.77857 4.79529 4.83570 4.87797 4.93261 4.97538 5.03039 5.05570 5.12763 5.15202 5.17086 5.21585 5.25386 5.31009 5.40626 5.46629 5.56078 5.65156 5.65426 5.66644 5.82435 6.09131 6.21284 6.76419 7.02027 7.28766 7.71507 8.44066 9.28675 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022098 B = 0.003207 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.782468 B = 8728.824889 C = 8929.768728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.068 4.068 3 C 0.538 3.462 4 O -0.590 6.590 5 N -0.607 5.607 6 C 0.086 3.914 7 C 0.134 3.866 8 H 0.135 0.865 9 C -0.129 4.129 10 C 0.099 3.901 11 H 0.102 0.898 12 C 0.189 3.811 13 N -0.615 5.615 14 C -0.223 4.223 15 H 0.098 0.902 16 C -0.073 4.073 17 N -0.958 5.958 18 Si 0.974 3.026 19 H -0.256 1.256 20 H -0.301 1.301 21 H -0.299 1.299 22 C -0.107 4.107 23 C -0.082 4.082 24 C -0.091 4.091 25 C -0.131 4.131 26 C -0.135 4.135 27 C -0.132 4.132 28 C -0.138 4.138 29 C -0.072 4.072 30 C -0.057 4.057 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.031 0.969 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.100 0.900 38 H -0.005 1.005 39 H 0.016 0.984 40 H 0.242 0.758 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.058 0.942 45 H 0.136 0.864 46 H 0.141 0.859 47 H 0.138 0.862 48 H 0.123 0.877 49 H 0.057 0.943 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.736 -18.872 -3.371 22.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.071 4.071 3 C 0.328 3.672 4 O -0.470 6.470 5 N -0.340 5.340 6 C -0.037 4.037 7 C 0.027 3.973 8 H 0.153 0.847 9 C -0.168 4.168 10 C -0.004 4.004 11 H 0.120 0.880 12 C 0.063 3.937 13 N -0.339 5.339 14 C -0.352 4.352 15 H 0.116 0.884 16 C -0.265 4.265 17 N -0.608 5.608 18 Si 0.804 3.196 19 H -0.180 1.180 20 H -0.229 1.229 21 H -0.227 1.227 22 C -0.144 4.144 23 C -0.119 4.119 24 C -0.091 4.091 25 C -0.149 4.149 26 C -0.153 4.153 27 C -0.150 4.150 28 C -0.156 4.156 29 C -0.072 4.072 30 C -0.094 4.094 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.122 0.878 36 H 0.094 0.906 37 H 0.118 0.882 38 H 0.013 0.987 39 H 0.034 0.966 40 H 0.051 0.949 41 H 0.117 0.883 42 H 0.112 0.888 43 H 0.121 0.879 44 H 0.077 0.923 45 H 0.153 0.847 46 H 0.159 0.841 47 H 0.156 0.844 48 H 0.141 0.859 49 H 0.076 0.924 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 11.909 -18.592 -2.788 22.255 hybrid contribution -1.155 1.348 0.910 1.995 sum 10.754 -17.244 -1.878 20.409 Atomic orbital electron populations 1.21944 0.91777 1.03702 1.02520 1.20764 0.97150 0.90292 0.98934 1.20633 0.78972 0.87821 0.79786 1.90638 1.40529 1.78458 1.37411 1.49469 1.54147 1.09285 1.21081 1.23736 0.95537 0.99420 0.85021 1.23594 0.88568 0.88382 0.96749 0.84720 1.24043 0.98261 1.01904 0.92622 1.24004 0.96665 0.81230 0.98540 0.87997 1.21665 0.89055 0.95526 0.87452 1.45737 1.17876 1.55365 1.14967 1.19572 0.92695 1.21843 1.01057 0.88421 1.25639 1.02501 1.01453 0.96932 1.70162 1.38948 1.40210 1.11449 0.85050 0.79497 0.77119 0.77936 1.18029 1.22856 1.22713 1.21815 0.94874 1.01706 0.96002 1.20533 0.95253 1.01570 0.94543 1.19811 0.94346 0.99831 0.95101 1.21401 0.93687 1.00397 0.99408 1.21332 1.00767 1.00541 0.92618 1.21309 0.94113 1.00560 0.99004 1.21331 0.95413 1.01067 0.97801 1.19665 0.95732 0.98508 0.93277 1.20391 0.91912 1.00545 0.96517 0.91082 0.88454 0.94947 0.91712 0.87786 0.90590 0.88186 0.98707 0.96585 0.94889 0.88314 0.88777 0.87896 0.92320 0.84657 0.84090 0.84415 0.85903 0.92414 0.87564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 8.27 71.98 0.60 -3.02 16 2 C -0.07 -1.80 0.50 -52.91 -0.03 -1.83 16 3 C 0.54 19.14 4.71 87.66 0.41 19.55 16 4 O -0.59 -25.84 15.49 -3.02 -0.05 -25.89 16 5 N -0.61 -21.17 2.99 -765.24 -2.28 -23.45 16 6 C 0.09 2.54 4.73 86.93 0.41 2.95 16 7 C 0.13 4.43 5.48 46.93 0.26 4.69 16 8 H 0.14 3.70 8.14 -2.39 -0.02 3.68 16 9 C -0.13 -4.05 6.79 33.46 0.23 -3.82 16 10 C 0.10 3.89 5.20 46.93 0.24 4.14 16 11 H 0.10 4.13 8.04 -2.39 -0.02 4.11 16 12 C 0.19 9.42 4.84 86.93 0.42 9.84 16 13 N -0.61 -28.88 3.08 -645.46 -1.99 -30.88 16 14 C -0.22 -11.56 10.38 84.03 0.87 -10.69 16 15 H 0.10 4.65 7.83 -2.91 -0.02 4.62 16 16 C -0.07 -4.05 5.49 84.86 0.47 -3.58 16 17 N -0.96 -58.33 10.66 21.65 0.23 -58.10 16 18 Si 0.97 44.87 29.55 68.60 2.03 46.90 16 19 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 20 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 21 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 22 C -0.11 -2.06 4.54 30.61 0.14 -1.93 16 23 C -0.08 -1.72 5.17 29.74 0.15 -1.57 16 24 C -0.09 -2.28 5.50 -19.86 -0.11 -2.39 16 25 C -0.13 -2.95 9.61 22.36 0.21 -2.73 16 26 C -0.13 -2.85 10.05 22.20 0.22 -2.63 16 27 C -0.13 -2.95 10.05 22.21 0.22 -2.72 16 28 C -0.14 -3.52 9.61 22.36 0.21 -3.31 16 29 C -0.07 -1.94 4.78 -19.84 -0.09 -2.04 16 30 C -0.06 -1.46 4.09 29.76 0.12 -1.34 16 31 H 0.07 1.85 5.04 -2.39 -0.01 1.84 16 32 H 0.10 1.80 8.06 -2.38 -0.02 1.78 16 33 H 0.03 0.99 8.13 -2.39 -0.02 0.97 16 34 H 0.06 2.13 5.81 -2.39 -0.01 2.11 16 35 H 0.10 2.19 5.82 -2.38 -0.01 2.17 16 36 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 37 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 38 H -0.01 -0.31 7.77 -2.39 -0.02 -0.33 16 39 H 0.02 0.91 7.44 -2.39 -0.02 0.89 16 40 H 0.24 14.56 8.31 -92.71 -0.77 13.79 16 41 H 0.10 1.49 8.10 -2.39 -0.02 1.47 16 42 H 0.09 1.59 4.99 -2.39 -0.01 1.58 16 43 H 0.10 1.57 8.12 -2.39 -0.02 1.55 16 44 H 0.06 1.46 7.29 -2.39 -0.02 1.45 16 45 H 0.14 2.39 8.05 -2.91 -0.02 2.37 16 46 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 47 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 48 H 0.12 2.81 8.05 -2.91 -0.02 2.79 16 49 H 0.06 1.76 7.81 -2.39 -0.02 1.74 16 50 H 0.11 2.10 8.06 -2.38 -0.02 2.08 16 Total: -1.00 -74.40 376.15 3.84 -70.56 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.94 Total: 23.28 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 4.97 Total: -2.42 kcal Atomic # 7 Polarization: -108.38 SS G_CDS: -4.04 Total: -112.43 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.05 Total: -25.89 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -74.40 3.84 -70.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032823870.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.891 kcal (2) G-P(sol) polarization free energy of solvation -74.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds