Wall clock time and date at job start Sat Apr 11 2020 06:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00286 * 2 1 4 4 H 1.48500 * 109.46804 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.46989 * 120.00128 * 3 2 1 6 6 H 1.48494 * 109.47181 * 240.00437 * 3 2 1 7 7 C 1.38811 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00156 * 218.92181 * 7 2 1 9 9 N 1.36934 * 120.00211 * 38.91859 * 7 2 1 10 10 C 1.47150 * 120.98133 * 8.65449 * 9 7 2 11 11 C 1.53304 * 108.38505 * 129.44195 * 10 9 7 12 12 O 1.42961 * 109.21950 * 52.30135 * 11 10 9 13 13 C 1.42959 * 114.16934 * 297.42007 * 12 11 10 14 14 H 1.08997 * 109.51011 * 302.60665 * 13 12 11 15 15 C 1.53003 * 109.51250 * 182.50706 * 13 12 11 16 16 N 1.46497 * 109.46939 * 64.99697 * 15 13 12 17 17 C 1.34783 * 119.99734 * 180.02562 * 16 15 13 18 18 O 1.21282 * 120.00063 * 359.97438 * 17 16 15 19 19 C 1.50704 * 119.99833 * 180.02562 * 17 16 15 20 20 H 1.09002 * 109.58486 * 2.77496 * 19 17 16 21 21 C 1.53191 * 109.58499 * 242.49395 * 19 17 16 22 22 C 1.53039 * 109.31445 * 185.57716 * 21 19 17 23 23 C 1.53045 * 109.53631 * 61.36575 * 22 21 19 24 24 C 1.53200 * 109.31197 * 298.63622 * 23 22 21 25 25 N 1.46923 * 109.58593 * 123.20351 * 19 17 16 26 26 C 1.34774 * 120.63207 * 353.39681 * 25 19 17 27 27 N 1.34786 * 119.99794 * 184.37925 * 26 25 19 28 28 O 1.21580 * 120.00241 * 4.37181 * 26 25 19 29 29 C 1.47160 * 120.98389 * 188.37509 * 9 7 2 30 30 H 0.97000 * 120.00480 * 175.58563 * 1 2 3 31 31 H 1.09003 * 109.68449 * 249.16212 * 10 9 7 32 32 H 1.09001 * 109.68048 * 9.71866 * 10 9 7 33 33 H 1.08995 * 109.51151 * 172.22907 * 11 10 9 34 34 H 1.08998 * 109.50904 * 292.37721 * 11 10 9 35 35 H 1.08994 * 109.46939 * 184.99880 * 15 13 12 36 36 H 1.09000 * 109.47304 * 305.00214 * 15 13 12 37 37 H 0.96995 * 120.00355 * 0.02562 * 16 15 13 38 38 H 1.09004 * 109.49540 * 305.52916 * 21 19 17 39 39 H 1.08999 * 109.49719 * 65.59207 * 21 19 17 40 40 H 1.09000 * 109.46394 * 181.38174 * 22 21 19 41 41 H 1.08997 * 109.46160 * 301.36081 * 22 21 19 42 42 H 1.08993 * 109.49825 * 58.58723 * 23 22 21 43 43 H 1.08996 * 109.49854 * 178.68780 * 23 22 21 44 44 H 1.08995 * 109.58593 * 174.42388 * 24 23 22 45 45 H 1.08998 * 109.58256 * 294.84736 * 24 23 22 46 46 H 0.96995 * 120.00051 * 4.38610 * 27 26 25 47 47 H 0.96997 * 119.99440 * 184.39239 * 27 26 25 48 48 H 1.08998 * 109.68208 * 350.27956 * 29 9 7 49 49 H 1.08999 * 109.68221 * 110.83494 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6963 1.2126 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 2.9104 -1.3063 0.5870 9 7 1.5535 -2.2561 -0.7460 10 6 0.4439 -2.0865 -1.6975 11 6 0.8727 -2.6691 -3.0491 12 8 1.3460 -4.0044 -2.8572 13 6 2.5034 -4.1010 -2.0236 14 1 3.3063 -3.4956 -2.4441 15 6 2.9535 -5.5610 -1.9414 16 7 3.3906 -6.0125 -3.2647 17 6 3.8323 -7.2746 -3.4342 18 8 3.8683 -8.0363 -2.4911 19 6 4.2825 -7.7389 -4.7954 20 1 4.2267 -6.9100 -5.5011 21 6 3.3802 -8.8812 -5.2727 22 6 3.9252 -9.4405 -6.5889 23 6 5.3326 -9.9982 -6.3643 24 6 6.2570 -8.8684 -5.8994 25 7 5.6650 -8.2298 -4.7160 26 6 6.3767 -8.0969 -3.5792 27 7 7.6711 -8.4711 -3.5469 28 8 5.8511 -7.6393 -2.5829 29 6 2.1619 -3.5905 -0.6237 30 1 -0.4851 -0.8375 -0.0647 31 1 -0.4367 -2.6152 -1.3326 32 1 0.2159 -1.0266 -1.8103 33 1 0.0202 -2.6790 -3.7282 34 1 1.6694 -2.0577 -3.4728 35 1 3.7805 -5.6470 -1.2366 36 1 2.1219 -6.1791 -1.6030 37 1 3.3622 -5.4032 -4.0189 38 1 3.3642 -9.6704 -4.5210 39 1 2.3688 -8.5056 -5.4275 40 1 3.2712 -10.2372 -6.9434 41 1 3.9645 -8.6449 -7.3329 42 1 5.2981 -10.7768 -5.6024 43 1 5.7109 -10.4173 -7.2966 44 1 7.2341 -9.2779 -5.6433 45 1 6.3642 -8.1328 -6.6965 46 1 8.1082 -8.7762 -4.3573 47 1 8.1656 -8.4353 -2.7132 48 1 3.0710 -3.5261 -0.0258 49 1 1.4572 -4.2731 -0.1488 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035572259.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:13 Heat of formation + Delta-G solvation = -58.229273 kcal Electronic energy + Delta-G solvation = -31153.589866 eV Core-core repulsion = 26924.562254 eV Total energy + Delta-G solvation = -4229.027613 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.11383 -39.02453 -38.27389 -37.55299 -34.99177 -34.32499 -33.96801 -32.72569 -31.84615 -31.34602 -30.40713 -27.67124 -26.18060 -25.04355 -23.90408 -23.33877 -21.93682 -21.62324 -20.64740 -19.80130 -19.53970 -18.55720 -17.60186 -17.19286 -16.61993 -16.07541 -15.95641 -15.50773 -15.15211 -14.90618 -14.84579 -14.70586 -14.35419 -14.23752 -14.02677 -13.64080 -13.57302 -13.52490 -13.41613 -13.08378 -12.84613 -12.63044 -12.11897 -11.90014 -11.72153 -11.58073 -11.29177 -11.11601 -11.03272 -10.84941 -10.51646 -10.39522 -10.11704 -10.01444 -9.88255 -9.79889 -9.53461 -9.37571 -9.23734 -8.94046 -8.52493 -8.18318 -6.98421 -6.26939 -3.06971 2.26934 2.96081 3.26950 3.37909 3.48398 3.52933 3.70885 3.92928 4.21294 4.30363 4.38320 4.47516 4.53678 4.64760 4.79530 4.88955 4.99123 5.06006 5.06992 5.30345 5.32822 5.39936 5.43805 5.46660 5.53982 5.61412 5.65940 5.78459 5.94370 5.97081 6.00750 6.06479 6.11010 6.23449 6.32587 6.36375 6.45362 6.63796 6.71910 6.80505 6.87287 7.03242 7.62084 7.75667 7.80411 7.88692 8.44153 8.48527 8.71621 8.98998 9.82221 10.23212 11.11156 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020787 B = 0.002450 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.690714 B =11423.531731 C =12016.904847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.025 4.025 3 Si 1.059 2.941 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.294 1.294 7 C -0.365 4.365 8 H 0.069 0.931 9 N -0.602 5.602 10 C 0.105 3.895 11 C 0.047 3.953 12 O -0.388 6.388 13 C 0.066 3.934 14 H 0.059 0.941 15 C 0.141 3.859 16 N -0.722 5.722 17 C 0.525 3.475 18 O -0.506 6.506 19 C 0.148 3.852 20 H 0.085 0.915 21 C -0.124 4.124 22 C -0.117 4.117 23 C -0.137 4.137 24 C 0.114 3.886 25 N -0.620 5.620 26 C 0.696 3.304 27 N -0.870 5.870 28 O -0.545 6.545 29 C 0.128 3.872 30 H 0.270 0.730 31 H 0.023 0.977 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.045 0.955 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.396 0.604 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.391 0.609 47 H 0.413 0.587 48 H 0.065 0.935 49 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.009 -19.538 -18.514 29.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.227 4.227 3 Si 0.889 3.111 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.222 1.222 7 C -0.492 4.492 8 H 0.087 0.913 9 N -0.327 5.327 10 C -0.021 4.021 11 C -0.031 4.031 12 O -0.307 6.307 13 C 0.006 3.994 14 H 0.077 0.923 15 C 0.017 3.983 16 N -0.375 5.375 17 C 0.309 3.691 18 O -0.379 6.379 19 C 0.040 3.960 20 H 0.103 0.897 21 C -0.163 4.163 22 C -0.155 4.155 23 C -0.175 4.175 24 C -0.009 4.009 25 N -0.361 5.361 26 C 0.396 3.604 27 N -0.441 5.441 28 O -0.419 6.419 29 C 0.001 3.999 30 H 0.082 0.918 31 H 0.041 0.959 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.230 0.770 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.089 0.911 46 H 0.221 0.779 47 H 0.245 0.755 48 H 0.084 0.916 49 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 12.274 -18.234 -17.152 27.881 hybrid contribution 0.847 -1.322 -0.433 1.629 sum 13.121 -19.556 -17.585 29.392 Atomic orbital electron populations 1.70883 1.06704 1.30988 1.45890 1.25662 0.96040 1.01039 0.99916 0.83554 0.75207 0.75975 0.76346 1.21165 1.21946 1.22212 1.19969 1.09288 0.91199 1.28778 0.91340 1.44215 1.38296 1.05298 1.44924 1.21833 0.90064 1.02053 0.88133 1.23112 0.98178 0.83109 0.98658 1.87796 1.45770 1.28043 1.69130 1.22743 0.88064 0.94509 0.94084 0.92340 1.21254 0.99413 0.93120 0.84541 1.45745 1.67053 1.12676 1.11981 1.19650 0.77626 0.82461 0.89334 1.90695 1.51734 1.54181 1.41288 1.20993 0.81521 0.97111 0.96347 0.89726 1.21858 0.98511 0.97882 0.98040 1.21499 0.96134 1.00897 0.96936 1.21946 0.95793 0.97949 1.01860 1.21661 0.96407 0.95183 0.87657 1.47003 1.12662 1.64155 1.12330 1.16067 0.81612 0.79450 0.83307 1.43204 1.11155 1.74566 1.15192 1.91241 1.67909 1.49654 1.33101 1.21263 0.97690 0.87716 0.93239 0.91817 0.95936 0.88395 0.89814 0.93709 0.90180 0.91231 0.77039 0.90241 0.90052 0.91048 0.91418 0.91206 0.90477 0.90222 0.91062 0.77919 0.75481 0.91605 0.95516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.02 12.36 55.49 0.69 -26.33 16 2 C -0.02 -0.70 4.56 -17.43 -0.08 -0.78 16 3 Si 1.06 25.26 30.05 -169.99 -5.11 20.16 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.36 -10.35 9.58 -15.06 -0.14 -10.50 16 8 H 0.07 1.95 7.96 -52.48 -0.42 1.54 16 9 N -0.60 -15.52 3.07 -172.07 -0.53 -16.04 16 10 C 0.11 2.51 4.97 -3.53 -0.02 2.49 16 11 C 0.05 0.92 6.99 37.31 0.26 1.18 16 12 O -0.39 -7.46 10.33 -35.23 -0.36 -7.83 16 13 C 0.07 1.24 2.80 -26.79 -0.07 1.16 16 14 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 15 C 0.14 2.43 5.34 -4.04 -0.02 2.41 16 16 N -0.72 -10.89 5.50 -60.29 -0.33 -11.22 16 17 C 0.52 8.12 4.80 -10.98 -0.05 8.06 16 18 O -0.51 -9.96 13.90 -20.04 -0.28 -10.24 16 19 C 0.15 1.59 3.31 -68.75 -0.23 1.36 16 20 H 0.08 0.73 7.92 -51.93 -0.41 0.32 16 21 C -0.12 -1.10 5.33 -26.61 -0.14 -1.24 16 22 C -0.12 -0.67 5.88 -26.69 -0.16 -0.82 16 23 C -0.14 -0.67 6.08 -26.60 -0.16 -0.83 16 24 C 0.11 0.61 6.36 -3.71 -0.02 0.59 16 25 N -0.62 -6.11 2.97 -172.23 -0.51 -6.62 16 26 C 0.70 8.83 8.39 -86.91 -0.73 8.10 16 27 N -0.87 -6.90 8.75 27.63 0.24 -6.66 16 28 O -0.55 -9.85 12.28 -20.30 -0.25 -10.10 16 29 C 0.13 2.83 6.00 -3.74 -0.02 2.81 16 30 H 0.27 8.13 6.57 -40.82 -0.27 7.86 16 31 H 0.02 0.55 8.05 -51.93 -0.42 0.14 16 32 H 0.10 2.55 5.54 -51.93 -0.29 2.27 16 33 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.40 5.15 8.32 -40.82 -0.34 4.81 16 38 H 0.08 0.88 8.02 -51.93 -0.42 0.46 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 44 H 0.08 0.27 5.71 -51.93 -0.30 -0.03 16 45 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.39 1.73 6.39 -40.82 -0.26 1.47 16 47 H 0.41 3.05 8.93 -40.82 -0.36 2.69 16 48 H 0.07 1.42 7.90 -51.93 -0.41 1.01 16 49 H 0.03 0.60 8.13 -51.93 -0.42 0.18 16 LS Contribution 379.93 15.07 5.73 5.73 Total: -1.00 -37.81 379.93 -10.07 -47.88 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -7.76 Total: 7.29 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: -1.59 Total: 13.99 kcal Atomic # 7 Polarization: -66.43 SS G_CDS: -0.44 Total: -66.87 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.89 Total: -28.17 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.11 Total: 20.16 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.81 -10.07 -47.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035572259.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.346 kcal (2) G-P(sol) polarization free energy of solvation -37.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds