Wall clock time and date at job start Sat Apr 11 2020 06:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86809 * 119.99658 * 2 1 4 4 H 1.48499 * 109.47003 * 270.00248 * 3 2 1 5 5 H 1.48497 * 109.46877 * 30.00211 * 3 2 1 6 6 H 1.48504 * 109.46633 * 149.99874 * 3 2 1 7 7 C 1.38806 * 120.00294 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00255 * 175.87329 * 7 2 1 9 9 N 1.36937 * 119.99930 * 355.87184 * 7 2 1 10 10 C 1.47157 * 120.98071 * 214.97239 * 9 7 2 11 11 C 1.53298 * 108.38553 * 230.51381 * 10 9 7 12 12 O 1.42965 * 109.22183 * 307.70298 * 11 10 9 13 13 C 1.42963 * 114.16907 * 62.58078 * 12 11 10 14 14 H 1.08995 * 109.54945 * 57.36406 * 13 12 11 15 15 C 1.52995 * 109.50906 * 177.49584 * 13 12 11 16 16 N 1.46500 * 109.47015 * 299.74187 * 15 13 12 17 17 C 1.34781 * 119.99503 * 180.02562 * 16 15 13 18 18 O 1.21276 * 120.00587 * 0.02562 * 17 16 15 19 19 C 1.50709 * 119.99332 * 180.02562 * 17 16 15 20 20 C 1.53047 * 109.45547 * 180.02562 * 19 17 16 21 21 C 1.53194 * 109.31049 * 181.38628 * 20 19 17 22 22 N 1.46928 * 108.77351 * 305.36276 * 21 20 19 23 23 C 1.34776 * 120.62966 * 233.58698 * 22 21 20 24 24 N 1.34767 * 120.00125 * 185.59006 * 23 22 21 25 25 O 1.21588 * 120.00082 * 5.58939 * 23 22 21 26 26 C 1.46926 * 118.73548 * 53.86230 * 22 21 20 27 27 C 1.53038 * 109.45875 * 300.06631 * 19 17 16 28 28 C 1.47149 * 120.98471 * 34.95456 * 9 7 2 29 29 H 0.96996 * 120.00690 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.68028 * 350.24104 * 10 9 7 31 31 H 1.09000 * 109.67782 * 110.75687 * 10 9 7 32 32 H 1.08997 * 109.50977 * 67.62475 * 11 10 9 33 33 H 1.09001 * 109.50929 * 187.77662 * 11 10 9 34 34 H 1.09007 * 109.46842 * 179.74848 * 15 13 12 35 35 H 1.08995 * 109.47429 * 59.74951 * 15 13 12 36 36 H 0.96998 * 120.00162 * 0.02562 * 16 15 13 37 37 H 1.08991 * 109.46165 * 60.03023 * 19 17 16 38 38 H 1.08993 * 109.49649 * 61.43234 * 20 19 17 39 39 H 1.09005 * 109.49635 * 301.33568 * 20 19 17 40 40 H 1.08998 * 109.58378 * 185.57653 * 21 20 19 41 41 H 1.09002 * 109.70482 * 65.21886 * 21 20 19 42 42 H 0.97004 * 120.00654 * 175.05534 * 24 23 22 43 43 H 0.97004 * 120.00181 * 354.78363 * 24 23 22 44 44 H 1.08996 * 109.58882 * 65.92905 * 26 22 21 45 45 H 1.09005 * 109.58330 * 186.35319 * 26 22 21 46 46 H 1.09004 * 109.49784 * 298.56400 * 27 19 17 47 47 H 1.08989 * 109.49908 * 58.66601 * 27 19 17 48 48 H 1.09008 * 109.68030 * 9.76224 * 28 9 7 49 49 H 1.08999 * 109.68355 * 249.21302 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0882 -1.2032 -0.0678 9 7 1.3283 -2.3865 0.0843 10 6 1.8903 -3.5335 0.8151 11 6 1.8247 -4.7656 -0.0947 12 8 0.4907 -4.9175 -0.5859 13 6 0.0377 -3.8298 -1.3955 14 1 0.7147 -3.6963 -2.2391 15 6 -1.3706 -4.1297 -1.9126 16 7 -1.3447 -5.3530 -2.7182 17 6 -2.4797 -5.8136 -3.2808 18 8 -3.5222 -5.2151 -3.1205 19 6 -2.4531 -7.0723 -4.1091 20 6 -3.8617 -7.3714 -4.6274 21 6 -3.8375 -8.6699 -5.4399 22 7 -2.8199 -8.5499 -6.4929 23 6 -3.1363 -8.7783 -7.7829 24 7 -2.1718 -8.7756 -8.7240 25 8 -4.2921 -8.9869 -8.0976 26 6 -1.4493 -8.1822 -6.1120 27 6 -1.5019 -6.8836 -5.2930 28 6 0.0117 -2.5498 -0.5522 29 1 -0.4851 0.8400 0.0004 30 1 2.9273 -3.3275 1.0800 31 1 1.3090 -3.7130 1.7195 32 1 2.5089 -4.6358 -0.9332 33 1 2.1071 -5.6525 0.4726 34 1 -1.7172 -3.2980 -2.5261 35 1 -2.0467 -4.2648 -1.0684 36 1 -0.5108 -5.8315 -2.8468 37 1 -2.1076 -7.9039 -3.4950 38 1 -4.1975 -6.5513 -5.2620 39 1 -4.5436 -7.4824 -3.7843 40 1 -4.8148 -8.8354 -5.8933 41 1 -3.5909 -9.5073 -4.7871 42 1 -2.3873 -9.0104 -9.6402 43 1 -1.2626 -8.5350 -8.4861 44 1 -1.0106 -8.9791 -5.5116 45 1 -0.8503 -8.0259 -7.0092 46 1 -1.8605 -6.0682 -5.9214 47 1 -0.5040 -6.6473 -4.9239 48 1 -0.1953 -1.6924 -1.1927 49 1 -0.7591 -2.6306 0.2142 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035603539.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:35 Heat of formation + Delta-G solvation = -87.953828 kcal Electronic energy + Delta-G solvation = -30259.503281 eV Core-core repulsion = 26029.186714 eV Total energy + Delta-G solvation = -4230.316566 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.82785 -39.72376 -38.51279 -37.25050 -34.85767 -34.35281 -34.28999 -32.89688 -31.40847 -31.25054 -30.77293 -27.57142 -26.56904 -25.09765 -23.66962 -23.29283 -22.33903 -21.58308 -20.46971 -19.87149 -19.53925 -18.76605 -17.31531 -17.17377 -16.89865 -16.04816 -15.82554 -15.75744 -15.32673 -15.19225 -14.92579 -14.63181 -14.40950 -14.15254 -14.08089 -13.82049 -13.61678 -13.33304 -13.25436 -12.94016 -12.83531 -12.73713 -12.16712 -12.02009 -11.66803 -11.58522 -11.08469 -11.05703 -10.97509 -10.94529 -10.73708 -10.48849 -10.44117 -10.28643 -10.17720 -10.03910 -9.77210 -9.67829 -9.08395 -8.96238 -8.86384 -8.58709 -6.68847 -5.90689 -3.45171 2.42699 2.71354 2.86838 3.26707 3.29986 3.37068 3.38308 3.72369 4.21390 4.28716 4.33753 4.37609 4.51155 4.72757 4.89594 4.96196 5.06259 5.11864 5.20495 5.27568 5.30561 5.38267 5.50808 5.55453 5.59943 5.64856 5.75704 5.83120 5.89113 6.00533 6.06672 6.09142 6.10316 6.23510 6.35113 6.42488 6.47898 6.56617 6.65177 6.75130 7.08612 7.48711 7.53019 7.63772 7.66137 7.81875 8.27752 8.33296 8.35824 9.08423 9.66495 10.27620 11.15646 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019914 B = 0.002095 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.714108 B =13364.818704 C =13553.589647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.012 3.988 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.260 4.260 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.109 3.891 11 C 0.050 3.950 12 O -0.391 6.391 13 C 0.054 3.946 14 H 0.054 0.946 15 C 0.132 3.868 16 N -0.719 5.719 17 C 0.512 3.488 18 O -0.542 6.542 19 C -0.106 4.106 20 C -0.114 4.114 21 C 0.128 3.872 22 N -0.628 5.628 23 C 0.709 3.291 24 N -0.869 5.869 25 O -0.594 6.594 26 C 0.114 3.886 27 C -0.128 4.128 28 C 0.150 3.850 29 H 0.258 0.742 30 H 0.061 0.939 31 H 0.027 0.973 32 H 0.042 0.958 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.401 0.599 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.068 0.932 42 H 0.413 0.587 43 H 0.396 0.604 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.104 0.896 49 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.670 -18.821 -12.434 22.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.188 4.188 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.390 4.390 8 H 0.084 0.916 9 N -0.320 5.320 10 C -0.017 4.017 11 C -0.028 4.028 12 O -0.311 6.311 13 C -0.006 4.006 14 H 0.072 0.928 15 C 0.008 3.992 16 N -0.369 5.369 17 C 0.298 3.702 18 O -0.419 6.419 19 C -0.127 4.127 20 C -0.153 4.153 21 C 0.005 3.995 22 N -0.367 5.367 23 C 0.409 3.591 24 N -0.439 5.439 25 O -0.472 6.472 26 C -0.010 4.010 27 C -0.166 4.166 28 C 0.024 3.976 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.235 0.765 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.116 0.884 41 H 0.086 0.914 42 H 0.245 0.755 43 H 0.226 0.774 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.094 0.906 47 H 0.101 0.899 48 H 0.122 0.878 49 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -1.113 -18.478 -12.282 22.215 hybrid contribution 1.609 1.026 -0.186 1.917 sum 0.496 -17.452 -12.467 21.453 Atomic orbital electron populations 1.69871 1.05395 1.25874 1.53427 1.25361 0.95598 0.98453 0.99366 0.86256 0.79163 0.83359 0.77755 1.21287 1.21389 1.20326 1.19121 0.90728 0.82846 1.46283 0.91639 1.43962 1.19400 1.09921 1.58670 1.21622 0.98197 0.88285 0.93642 1.22996 0.83509 0.98959 0.97307 1.87767 1.30839 1.43316 1.69153 1.23212 0.92973 0.90521 0.93878 0.92838 1.21426 0.96856 0.86266 0.94616 1.46009 1.10812 1.28089 1.52027 1.20512 0.83720 0.86147 0.79858 1.90714 1.30871 1.59122 1.61156 1.21312 0.98117 0.96804 0.96483 1.21756 0.95234 0.97862 1.00438 1.21571 0.92745 0.97060 0.88111 1.47299 1.10935 1.73126 1.05323 1.15856 0.84764 0.77604 0.80862 1.43176 1.11674 1.77003 1.12097 1.90963 1.18170 1.57544 1.80516 1.21740 0.82971 0.96779 0.99491 1.22012 0.99881 0.98161 0.96573 1.21462 0.87461 0.93440 0.95267 0.93203 0.92017 0.95553 0.94004 0.90109 0.90052 0.90842 0.76532 0.88257 0.90577 0.89602 0.88409 0.91378 0.75497 0.77375 0.90633 0.90151 0.90558 0.89865 0.87756 0.95319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.31 10.68 55.49 0.59 -24.72 16 2 C 0.01 0.31 5.33 -17.43 -0.09 0.22 16 3 Si 0.91 20.97 29.56 -169.99 -5.02 15.95 16 4 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.26 -6.89 9.60 -15.06 -0.14 -7.04 16 8 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 9 N -0.60 -14.49 3.05 -171.83 -0.52 -15.01 16 10 C 0.11 2.20 6.73 -3.53 -0.02 2.17 16 11 C 0.05 0.84 6.99 37.31 0.26 1.10 16 12 O -0.39 -6.90 10.14 -35.23 -0.36 -7.26 16 13 C 0.05 0.97 2.86 -26.58 -0.08 0.90 16 14 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 15 C 0.13 2.16 5.37 -4.04 -0.02 2.14 16 16 N -0.72 -9.33 5.34 -60.29 -0.32 -9.65 16 17 C 0.51 6.78 7.16 -10.98 -0.08 6.70 16 18 O -0.54 -9.52 15.98 5.56 0.09 -9.43 16 19 C -0.11 -0.93 2.49 -91.72 -0.23 -1.16 16 20 C -0.11 -1.10 4.65 -26.61 -0.12 -1.22 16 21 C 0.13 1.09 6.44 -3.71 -0.02 1.06 16 22 N -0.63 -5.09 2.97 -178.23 -0.53 -5.62 16 23 C 0.71 7.12 8.57 -86.93 -0.74 6.38 16 24 N -0.87 -5.02 8.78 27.63 0.24 -4.78 16 25 O -0.59 -8.64 16.60 5.29 0.09 -8.56 16 26 C 0.11 0.58 6.42 -3.49 -0.02 0.56 16 27 C -0.13 -0.85 5.28 -26.39 -0.14 -0.99 16 28 C 0.15 3.46 4.67 -3.53 -0.02 3.45 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.06 1.18 7.96 -51.93 -0.41 0.76 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.38 8.14 -51.92 -0.42 0.96 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.40 4.29 7.75 -40.82 -0.32 3.98 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.89 8.13 -51.93 -0.42 0.47 16 39 H 0.09 0.86 8.07 -51.93 -0.42 0.44 16 40 H 0.10 0.99 7.00 -51.93 -0.36 0.63 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.41 1.97 8.93 -40.82 -0.36 1.61 16 43 H 0.40 1.19 6.32 -40.82 -0.26 0.94 16 44 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.08 0.24 5.65 -51.93 -0.29 -0.06 16 46 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.08 0.44 7.52 -51.93 -0.39 0.05 16 48 H 0.10 2.67 6.13 -51.92 -0.32 2.35 16 49 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 386.12 15.07 5.82 5.82 Total: -1.00 -35.03 386.12 -9.16 -44.18 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -7.75 Total: 4.83 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: -1.48 Total: 14.25 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: -0.54 Total: -59.78 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.18 Total: -25.25 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.03 -9.16 -44.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035603539.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.771 kcal (2) G-P(sol) polarization free energy of solvation -35.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds