Wall clock time and date at job start Sat Apr 11 2020 06:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.45989 * 2 1 4 4 C 1.34778 * 119.99710 * 299.97178 * 3 2 1 5 5 O 1.21279 * 120.00508 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99891 * 179.97438 * 4 3 2 7 7 H 1.09009 * 115.53911 * 325.59477 * 6 4 3 8 8 C 1.52956 * 117.48125 * 111.18157 * 6 4 3 9 9 H 1.09002 * 118.97678 * 356.70595 * 8 6 4 10 10 C 1.50949 * 118.98602 * 201.35817 * 8 6 4 11 11 C 1.38792 * 129.72646 * 115.01942 * 10 8 6 12 12 C 1.38018 * 120.31461 * 179.97438 * 11 10 8 13 13 C 1.38255 * 119.88707 * 0.02562 * 12 11 10 14 14 C 1.38023 * 119.87552 * 0.02562 * 13 12 11 15 15 C 1.37808 * 110.47812 * 294.98866 * 10 8 6 16 16 C 1.50969 * 110.46352 * 0.08928 * 15 10 8 17 17 C 1.53035 * 117.48549 * 180.02562 * 6 4 3 18 18 H 1.09004 * 119.41428 * 5.42642 * 17 6 4 19 19 C 1.53035 * 109.46184 * 119.97315 * 2 1 3 20 20 C 1.53191 * 109.31591 * 181.36852 * 19 2 1 21 21 N 1.46924 * 108.77440 * 305.37078 * 20 19 2 22 22 C 1.36939 * 120.62480 * 233.57934 * 21 20 19 23 23 H 1.08003 * 119.99890 * 152.33054 * 22 21 20 24 24 C 1.38809 * 120.00509 * 332.06129 * 22 21 20 25 25 N 1.31628 * 119.99550 * 343.02150 * 24 22 21 26 26 Si 1.86794 * 120.00328 * 163.02989 * 24 22 21 27 27 H 1.48497 * 109.47104 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47427 * 119.99632 * 26 24 22 29 29 H 1.48502 * 109.47041 * 239.99686 * 26 24 22 30 30 C 1.46917 * 118.74404 * 53.85333 * 21 20 19 31 31 C 1.53043 * 109.44848 * 240.03437 * 2 1 3 32 32 H 1.09001 * 109.47265 * 300.02873 * 1 2 3 33 33 H 1.09002 * 109.47291 * 60.02727 * 1 2 3 34 34 H 1.09003 * 109.47564 * 180.02562 * 1 2 3 35 35 H 0.96994 * 120.00041 * 119.97717 * 3 2 1 36 36 H 1.08003 * 119.84513 * 359.93346 * 11 10 8 37 37 H 1.07994 * 120.05667 * 179.97438 * 12 11 10 38 38 H 1.07994 * 120.06625 * 180.02562 * 13 12 11 39 39 H 1.07996 * 119.84479 * 179.97438 * 14 13 12 40 40 H 1.08999 * 109.91677 * 240.93934 * 16 15 10 41 41 H 1.08997 * 109.92312 * 119.63130 * 16 15 10 42 42 H 1.09003 * 109.49667 * 61.41660 * 19 2 1 43 43 H 1.08997 * 109.52653 * 301.33834 * 19 2 1 44 44 H 1.08992 * 109.59038 * 185.57497 * 20 19 2 45 45 H 1.09008 * 109.69893 * 65.22253 * 20 19 2 46 46 H 0.96995 * 119.99713 * 180.02562 * 25 24 22 47 47 H 1.09007 * 109.58721 * 65.92866 * 30 21 20 48 48 H 1.09005 * 109.59252 * 186.35446 * 30 21 20 49 49 H 1.08998 * 109.49450 * 298.57566 * 31 2 1 50 50 H 1.09001 * 109.49810 * 58.63400 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6927 2.2109 -1.0111 5 8 0.9956 1.8142 -1.9208 6 6 2.1943 3.6320 -1.0109 7 1 2.2787 4.1004 -0.0302 8 6 3.2321 4.0144 -2.0674 9 1 3.6095 3.2441 -2.7400 10 6 4.1088 5.2198 -1.8289 11 6 5.4826 5.2953 -1.6462 12 6 6.0920 6.5165 -1.4406 13 6 5.3312 7.6706 -1.4158 14 6 3.9647 7.5973 -1.5963 15 6 3.3506 6.3703 -1.8049 16 6 1.8924 6.0460 -2.0229 17 6 1.7896 4.5241 -2.1867 18 1 1.0900 4.1438 -2.9311 19 6 2.0399 -0.7209 1.2499 20 6 3.5714 -0.6891 1.2639 21 7 4.0675 -1.2493 -0.0005 22 6 4.9759 -2.2740 -0.0006 23 1 5.0089 -2.9663 -0.8289 24 6 5.8581 -2.4197 1.0612 25 7 6.0613 -1.4177 1.8902 26 14 6.7571 -4.0376 1.3134 27 1 6.3564 -4.9970 0.2532 28 1 8.2223 -3.8059 1.2439 29 1 6.4068 -4.5962 2.6440 30 6 3.5753 -0.6852 -1.2646 31 6 2.0396 -0.7208 -1.2502 32 1 -0.3634 0.5143 0.8897 33 1 -0.3634 0.5134 -0.8902 34 1 -0.3634 -1.0277 0.0005 35 1 2.5754 1.6988 0.7276 36 1 6.0775 4.3941 -1.6644 37 1 7.1612 6.5703 -1.2985 38 1 5.8050 8.6277 -1.2556 39 1 3.3709 8.4991 -1.5765 40 1 1.5325 6.5418 -2.9244 41 1 1.3076 6.3668 -1.1608 42 1 1.6976 -1.7557 1.2382 43 1 1.6575 -0.2213 2.1400 44 1 3.9417 -1.2850 2.0980 45 1 3.9166 0.3396 1.3682 46 1 6.6781 -1.5193 2.6319 47 1 3.9187 0.3446 -1.3635 48 1 3.9481 -1.2787 -2.0994 49 1 1.6972 -1.7556 -1.2384 50 1 1.6564 -0.2210 -2.1399 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045582453.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:40 Heat of formation + Delta-G solvation = 39.311359 kcal Electronic energy + Delta-G solvation = -30176.103039 eV Core-core repulsion = 26362.154368 eV Total energy + Delta-G solvation = -3813.948670 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.11496 -39.79953 -37.74565 -36.53089 -34.37223 -32.19135 -31.73835 -30.93476 -30.41269 -29.86939 -27.88004 -27.40278 -24.78654 -24.02185 -22.51997 -22.25646 -21.41643 -20.73193 -20.48295 -19.76236 -18.64554 -17.48690 -16.77540 -16.32766 -15.48658 -15.27394 -15.02215 -14.86055 -14.63320 -14.22462 -13.86971 -13.64824 -13.62925 -13.41478 -13.17818 -13.10481 -12.95217 -12.71537 -12.58304 -12.34156 -11.97845 -11.72837 -11.63445 -11.43384 -11.30924 -11.21023 -10.95556 -10.93441 -10.74443 -10.66507 -10.35257 -10.26987 -10.12264 -9.87534 -9.77336 -9.61216 -9.14034 -8.87836 -8.64849 -8.56990 -8.45890 -6.66116 -5.80154 -3.21493 1.15390 1.25013 2.68563 3.26912 3.36040 3.44419 3.46798 3.53483 3.85750 4.30905 4.44868 4.49690 4.72009 4.74480 4.92071 4.95133 4.97316 5.08371 5.23953 5.32324 5.36336 5.37527 5.44714 5.47160 5.54651 5.59660 5.62808 5.64095 5.82252 5.88111 5.95032 6.01039 6.06519 6.13139 6.20333 6.30356 6.31759 6.33508 6.39806 6.42208 6.53746 6.54276 6.69160 6.71626 6.83799 6.85836 6.97309 7.09591 7.29598 7.58754 7.79052 7.92799 8.44338 8.55729 9.20957 9.84471 10.41571 11.28253 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011572 B = 0.003312 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.968824 B = 8452.004775 C =10242.410202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.184 3.816 3 N -0.703 5.703 4 C 0.549 3.451 5 O -0.541 6.541 6 C -0.148 4.148 7 H 0.119 0.881 8 C -0.095 4.095 9 H 0.123 0.877 10 C -0.064 4.064 11 C -0.095 4.095 12 C -0.121 4.121 13 C -0.119 4.119 14 C -0.111 4.111 15 C -0.094 4.094 16 C -0.054 4.054 17 C -0.125 4.125 18 H 0.134 0.866 19 C -0.146 4.146 20 C 0.172 3.828 21 N -0.591 5.591 22 C -0.249 4.249 23 H 0.065 0.935 24 C 0.001 3.999 25 N -0.904 5.904 26 Si 0.901 3.099 27 H -0.278 1.278 28 H -0.291 1.291 29 H -0.289 1.289 30 C 0.151 3.849 31 C -0.142 4.142 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.401 0.599 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.089 0.911 45 H 0.016 0.984 46 H 0.252 0.748 47 H 0.015 0.985 48 H 0.049 0.951 49 H 0.063 0.937 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.481 16.783 -4.388 18.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.099 3.901 3 N -0.353 5.353 4 C 0.334 3.666 5 O -0.420 6.420 6 C -0.169 4.169 7 H 0.137 0.863 8 C -0.114 4.114 9 H 0.141 0.859 10 C -0.064 4.064 11 C -0.113 4.113 12 C -0.139 4.139 13 C -0.137 4.137 14 C -0.129 4.129 15 C -0.094 4.094 16 C -0.091 4.091 17 C -0.144 4.144 18 H 0.152 0.848 19 C -0.185 4.185 20 C 0.046 3.954 21 N -0.314 5.314 22 C -0.379 4.379 23 H 0.083 0.917 24 C -0.197 4.197 25 N -0.549 5.549 26 Si 0.731 3.269 27 H -0.203 1.203 28 H -0.218 1.218 29 H -0.216 1.216 30 C 0.024 3.976 31 C -0.182 4.182 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.236 0.764 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.107 0.893 45 H 0.034 0.966 46 H 0.062 0.938 47 H 0.033 0.967 48 H 0.068 0.932 49 H 0.081 0.919 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.858 16.463 -4.902 18.889 hybrid contribution 0.994 -0.673 0.745 1.413 sum -6.864 15.790 -4.157 17.712 Atomic orbital electron populations 1.22228 0.95442 1.01867 1.02314 1.20280 0.92556 0.80034 0.97213 1.46072 1.52463 1.11987 1.24757 1.19255 0.79916 0.85402 0.82006 1.90607 1.38508 1.76763 1.36105 1.22231 1.03617 0.94533 0.96509 0.86344 1.21368 0.89963 0.98506 1.01522 0.85886 1.19676 0.93301 0.93353 1.00099 1.20824 0.93454 0.98295 0.98732 1.21060 1.00007 0.92286 1.00592 1.21029 0.93696 0.98475 1.00489 1.20603 0.94675 0.96363 1.01282 1.20501 0.95605 0.93424 0.99909 1.20323 0.92463 0.93555 1.02775 1.22892 0.98439 0.92582 1.00462 0.84792 1.22520 1.01448 0.99999 0.94573 1.20732 0.86815 0.97085 0.90744 1.44055 1.48347 1.39505 0.99450 1.19247 1.09505 1.02925 1.06189 0.91712 1.25019 0.97204 0.97433 1.00027 1.70031 1.37765 1.28972 1.18114 0.86246 0.79206 0.83746 0.77740 1.20283 1.21780 1.21601 1.20915 0.90829 0.96016 0.89791 1.22462 0.98969 0.99596 0.97200 0.93376 0.90899 0.92266 0.76370 0.85692 0.85727 0.85912 0.86250 0.89401 0.89810 0.91030 0.92787 0.89303 0.96620 0.93772 0.96683 0.93195 0.91877 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 8.40 37.16 0.31 -2.13 16 2 C 0.18 3.11 0.66 -131.78 -0.09 3.03 16 3 N -0.70 -11.06 4.09 -47.57 -0.19 -11.25 16 4 C 0.55 8.49 7.03 -10.98 -0.08 8.41 16 5 O -0.54 -9.61 12.55 5.56 0.07 -9.54 16 6 C -0.15 -1.90 5.77 -91.78 -0.53 -2.43 16 7 H 0.12 1.39 8.14 -51.92 -0.42 0.97 16 8 C -0.10 -1.23 6.58 -91.44 -0.60 -1.83 16 9 H 0.12 1.71 8.14 -51.93 -0.42 1.29 16 10 C -0.06 -0.80 5.94 -104.45 -0.62 -1.42 16 11 C -0.10 -1.14 10.04 -39.46 -0.40 -1.54 16 12 C -0.12 -1.26 10.05 -39.66 -0.40 -1.66 16 13 C -0.12 -1.12 10.05 -39.65 -0.40 -1.52 16 14 C -0.11 -1.07 10.04 -39.46 -0.40 -1.47 16 15 C -0.09 -1.03 6.11 -104.45 -0.64 -1.67 16 16 C -0.05 -0.52 6.57 -27.53 -0.18 -0.70 16 17 C -0.13 -1.44 6.55 -90.15 -0.59 -2.03 16 18 H 0.13 1.59 7.80 -51.93 -0.40 1.19 16 19 C -0.15 -2.64 4.96 -26.61 -0.13 -2.77 16 20 C 0.17 3.88 5.02 -3.71 -0.02 3.87 16 21 N -0.59 -14.50 2.99 -172.06 -0.51 -15.02 16 22 C -0.25 -6.78 9.58 -15.06 -0.14 -6.92 16 23 H 0.07 1.76 7.89 -52.48 -0.41 1.35 16 24 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 25 N -0.90 -25.61 11.18 55.49 0.62 -24.99 16 26 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 29 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 30 C 0.15 3.26 6.28 -3.49 -0.02 3.24 16 31 C -0.14 -2.67 4.68 -26.39 -0.12 -2.80 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.19 6.17 -51.93 -0.32 0.87 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.40 6.07 7.27 -40.82 -0.30 5.77 16 36 H 0.13 1.48 8.06 -52.48 -0.42 1.05 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.09 2.28 6.04 -51.93 -0.31 1.97 16 45 H 0.02 0.36 6.95 -51.92 -0.36 0.00 16 46 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 47 H 0.02 0.34 7.74 -51.92 -0.40 -0.06 16 48 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 49 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 50 H 0.07 1.37 6.20 -51.93 -0.32 1.05 16 LS Contribution 388.77 15.07 5.86 5.86 Total: -1.00 -30.31 388.77 -12.20 -42.50 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -7.88 Total: 8.31 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -5.13 Total: -12.37 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.09 Total: -51.26 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.07 Total: -9.54 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.31 -12.20 -42.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045582453.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.815 kcal (2) G-P(sol) polarization free energy of solvation -30.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds