Wall clock time and date at job start Sat Apr 11 2020 06:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.45989 * 2 1 4 4 C 1.34778 * 119.99710 * 299.97178 * 3 2 1 5 5 O 1.21279 * 120.00508 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99891 * 179.97438 * 4 3 2 7 7 H 1.09009 * 115.53911 * 325.59477 * 6 4 3 8 8 C 1.52956 * 117.48125 * 111.18157 * 6 4 3 9 9 H 1.09002 * 118.97678 * 356.70595 * 8 6 4 10 10 C 1.50949 * 118.98602 * 201.35817 * 8 6 4 11 11 C 1.38792 * 129.72646 * 115.01942 * 10 8 6 12 12 C 1.38018 * 120.31461 * 179.97438 * 11 10 8 13 13 C 1.38255 * 119.88707 * 0.02562 * 12 11 10 14 14 C 1.38023 * 119.87552 * 0.02562 * 13 12 11 15 15 C 1.37808 * 110.47812 * 294.98866 * 10 8 6 16 16 C 1.50969 * 110.46352 * 0.08928 * 15 10 8 17 17 C 1.53035 * 117.48549 * 180.02562 * 6 4 3 18 18 H 1.09004 * 119.41428 * 5.42642 * 17 6 4 19 19 C 1.53035 * 109.46184 * 119.97315 * 2 1 3 20 20 C 1.53191 * 109.31591 * 181.36852 * 19 2 1 21 21 N 1.46924 * 108.77440 * 305.37078 * 20 19 2 22 22 C 1.36939 * 120.62480 * 233.57934 * 21 20 19 23 23 H 1.08003 * 119.99890 * 152.33054 * 22 21 20 24 24 C 1.38809 * 120.00509 * 332.06129 * 22 21 20 25 25 N 1.31628 * 119.99550 * 343.02150 * 24 22 21 26 26 Si 1.86794 * 120.00328 * 163.02989 * 24 22 21 27 27 H 1.48497 * 109.47104 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47427 * 119.99632 * 26 24 22 29 29 H 1.48502 * 109.47041 * 239.99686 * 26 24 22 30 30 C 1.46917 * 118.74404 * 53.85333 * 21 20 19 31 31 C 1.53043 * 109.44848 * 240.03437 * 2 1 3 32 32 H 1.09001 * 109.47265 * 300.02873 * 1 2 3 33 33 H 1.09002 * 109.47291 * 60.02727 * 1 2 3 34 34 H 1.09003 * 109.47564 * 180.02562 * 1 2 3 35 35 H 0.96994 * 120.00041 * 119.97717 * 3 2 1 36 36 H 1.08003 * 119.84513 * 359.93346 * 11 10 8 37 37 H 1.07994 * 120.05667 * 179.97438 * 12 11 10 38 38 H 1.07994 * 120.06625 * 180.02562 * 13 12 11 39 39 H 1.07996 * 119.84479 * 179.97438 * 14 13 12 40 40 H 1.08999 * 109.91677 * 240.93934 * 16 15 10 41 41 H 1.08997 * 109.92312 * 119.63130 * 16 15 10 42 42 H 1.09003 * 109.49667 * 61.41660 * 19 2 1 43 43 H 1.08997 * 109.52653 * 301.33834 * 19 2 1 44 44 H 1.08992 * 109.59038 * 185.57497 * 20 19 2 45 45 H 1.09008 * 109.69893 * 65.22253 * 20 19 2 46 46 H 0.96995 * 119.99713 * 180.02562 * 25 24 22 47 47 H 1.09007 * 109.58721 * 65.92866 * 30 21 20 48 48 H 1.09005 * 109.59252 * 186.35446 * 30 21 20 49 49 H 1.08998 * 109.49450 * 298.57566 * 31 2 1 50 50 H 1.09001 * 109.49810 * 58.63400 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6927 2.2109 -1.0111 5 8 0.9956 1.8142 -1.9208 6 6 2.1943 3.6320 -1.0109 7 1 2.2787 4.1004 -0.0302 8 6 3.2321 4.0144 -2.0674 9 1 3.6095 3.2441 -2.7400 10 6 4.1088 5.2198 -1.8289 11 6 5.4826 5.2953 -1.6462 12 6 6.0920 6.5165 -1.4406 13 6 5.3312 7.6706 -1.4158 14 6 3.9647 7.5973 -1.5963 15 6 3.3506 6.3703 -1.8049 16 6 1.8924 6.0460 -2.0229 17 6 1.7896 4.5241 -2.1867 18 1 1.0900 4.1438 -2.9311 19 6 2.0399 -0.7209 1.2499 20 6 3.5714 -0.6891 1.2639 21 7 4.0675 -1.2493 -0.0005 22 6 4.9759 -2.2740 -0.0006 23 1 5.0089 -2.9663 -0.8289 24 6 5.8581 -2.4197 1.0612 25 7 6.0613 -1.4177 1.8902 26 14 6.7571 -4.0376 1.3134 27 1 6.3564 -4.9970 0.2532 28 1 8.2223 -3.8059 1.2439 29 1 6.4068 -4.5962 2.6440 30 6 3.5753 -0.6852 -1.2646 31 6 2.0396 -0.7208 -1.2502 32 1 -0.3634 0.5143 0.8897 33 1 -0.3634 0.5134 -0.8902 34 1 -0.3634 -1.0277 0.0005 35 1 2.5754 1.6988 0.7276 36 1 6.0775 4.3941 -1.6644 37 1 7.1612 6.5703 -1.2985 38 1 5.8050 8.6277 -1.2556 39 1 3.3709 8.4991 -1.5765 40 1 1.5325 6.5418 -2.9244 41 1 1.3076 6.3668 -1.1608 42 1 1.6976 -1.7557 1.2382 43 1 1.6575 -0.2213 2.1400 44 1 3.9417 -1.2850 2.0980 45 1 3.9166 0.3396 1.3682 46 1 6.6781 -1.5193 2.6319 47 1 3.9187 0.3446 -1.3635 48 1 3.9481 -1.2787 -2.0994 49 1 1.6972 -1.7556 -1.2384 50 1 1.6564 -0.2210 -2.1399 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045582453.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:39 Heat of formation + Delta-G solvation = 25.008989 kcal Electronic energy + Delta-G solvation = -30176.723236 eV Core-core repulsion = 26362.154368 eV Total energy + Delta-G solvation = -3814.568868 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.11180 -41.03916 -39.04345 -37.64567 -36.07168 -33.72326 -32.86831 -32.30097 -31.64194 -31.30590 -29.08676 -28.67670 -26.06039 -25.64971 -23.98933 -23.41445 -22.65932 -22.03607 -21.41661 -20.87088 -20.16957 -18.84221 -18.46508 -17.19434 -16.86669 -16.49068 -16.31869 -16.16081 -15.82155 -15.59830 -15.41339 -15.19366 -14.86323 -14.59553 -14.55444 -14.43522 -14.04216 -13.82891 -13.64074 -13.42106 -13.32030 -13.10682 -13.09080 -12.86628 -12.71785 -12.63281 -12.55498 -12.24284 -12.15858 -12.00503 -11.80402 -11.75637 -11.60082 -11.36138 -11.31497 -11.06355 -10.57162 -10.50801 -9.95170 -9.68824 -9.43064 -8.67125 -7.88640 -5.33163 0.33158 0.44985 1.44605 1.47201 1.52043 1.57296 2.10164 2.50203 2.60155 2.93767 3.25867 3.34566 3.54458 3.68156 3.75310 3.79587 3.90534 3.99366 4.08433 4.10542 4.13488 4.19566 4.22877 4.35383 4.46946 4.58485 4.61532 4.67615 4.72713 4.79347 4.83799 4.87351 4.88374 4.89016 4.90327 4.96674 5.07231 5.11967 5.13686 5.20547 5.27221 5.27718 5.36126 5.47319 5.53158 5.61015 5.62780 5.68449 5.70926 5.76379 6.08878 6.38209 6.64819 7.14885 7.29679 7.84739 8.36980 9.17123 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011572 B = 0.003312 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.968824 B = 8452.004775 C =10242.410202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.187 3.813 3 N -0.703 5.703 4 C 0.548 3.452 5 O -0.565 6.565 6 C -0.151 4.151 7 H 0.132 0.868 8 C -0.108 4.108 9 H 0.100 0.900 10 C -0.087 4.087 11 C -0.120 4.120 12 C -0.129 4.129 13 C -0.117 4.117 14 C -0.111 4.111 15 C -0.099 4.099 16 C -0.048 4.048 17 C -0.109 4.109 18 H 0.130 0.870 19 C -0.131 4.131 20 C 0.180 3.820 21 N -0.605 5.605 22 C -0.265 4.265 23 H 0.059 0.941 24 C -0.044 4.044 25 N -0.929 5.929 26 Si 0.964 3.036 27 H -0.271 1.271 28 H -0.293 1.293 29 H -0.287 1.287 30 C 0.154 3.846 31 C -0.130 4.130 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.404 0.596 36 H 0.111 0.889 37 H 0.140 0.860 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.056 0.944 45 H 0.005 0.995 46 H 0.250 0.750 47 H 0.005 0.995 48 H 0.039 0.961 49 H 0.062 0.938 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.796 18.636 -3.990 20.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.101 3.899 3 N -0.353 5.353 4 C 0.335 3.665 5 O -0.445 6.445 6 C -0.172 4.172 7 H 0.150 0.850 8 C -0.127 4.127 9 H 0.118 0.882 10 C -0.087 4.087 11 C -0.138 4.138 12 C -0.147 4.147 13 C -0.135 4.135 14 C -0.129 4.129 15 C -0.099 4.099 16 C -0.085 4.085 17 C -0.127 4.127 18 H 0.148 0.852 19 C -0.171 4.171 20 C 0.054 3.946 21 N -0.329 5.329 22 C -0.395 4.395 23 H 0.077 0.923 24 C -0.240 4.240 25 N -0.575 5.575 26 Si 0.792 3.208 27 H -0.196 1.196 28 H -0.220 1.220 29 H -0.213 1.213 30 C 0.028 3.972 31 C -0.170 4.170 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.240 0.760 36 H 0.129 0.871 37 H 0.158 0.842 38 H 0.170 0.830 39 H 0.166 0.834 40 H 0.126 0.874 41 H 0.120 0.880 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.075 0.925 45 H 0.023 0.977 46 H 0.060 0.940 47 H 0.023 0.977 48 H 0.058 0.942 49 H 0.081 0.919 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.188 18.324 -4.511 20.989 hybrid contribution 1.477 -1.213 0.560 1.992 sum -7.711 17.111 -3.950 19.179 Atomic orbital electron populations 1.22111 0.93335 1.02688 1.02650 1.20199 0.93982 0.80317 0.95372 1.46060 1.52533 1.11599 1.25120 1.19637 0.79279 0.86277 0.81287 1.90590 1.39611 1.77472 1.36812 1.22164 1.04151 0.93259 0.97612 0.85017 1.21315 0.91243 0.98724 1.01445 0.88169 1.19734 0.93563 0.93674 1.01760 1.20922 0.93704 0.98819 1.00364 1.21312 1.01044 0.92049 1.00252 1.21417 0.93810 0.99188 0.99063 1.20974 0.95081 0.96826 1.00008 1.20735 0.96141 0.93370 0.99675 1.20364 0.91916 0.91639 1.04537 1.22974 0.96797 0.94007 0.98967 0.85232 1.22325 0.97774 1.00537 0.96425 1.20577 0.89727 0.95476 0.88814 1.44279 1.48360 1.39392 1.00873 1.19493 1.10152 1.03620 1.06232 0.92294 1.25705 0.98143 1.00262 0.99904 1.70164 1.38402 1.30523 1.18451 0.85265 0.77665 0.80221 0.77630 1.19556 1.21973 1.21337 1.20913 0.92895 0.94910 0.88491 1.22304 0.96366 0.99915 0.98405 0.91651 0.91893 0.91234 0.76030 0.87075 0.84245 0.83018 0.83355 0.87354 0.87965 0.91248 0.90024 0.92517 0.97674 0.94049 0.97694 0.94211 0.91931 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.25 8.40 71.98 0.60 -3.64 16 2 C 0.19 6.15 0.66 3.63 0.00 6.15 16 3 N -0.70 -21.90 4.09 -422.80 -1.73 -23.63 16 4 C 0.55 16.91 7.03 87.66 0.62 17.52 16 5 O -0.56 -19.99 12.55 -3.03 -0.04 -20.03 16 6 C -0.15 -3.84 5.77 -11.54 -0.07 -3.91 16 7 H 0.13 2.97 8.14 -2.38 -0.02 2.95 16 8 C -0.11 -2.89 6.58 -11.32 -0.07 -2.96 16 9 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 10 C -0.09 -2.17 5.94 -19.75 -0.12 -2.29 16 11 C -0.12 -2.98 10.04 22.35 0.22 -2.76 16 12 C -0.13 -2.56 10.05 22.22 0.22 -2.33 16 13 C -0.12 -1.90 10.05 22.22 0.22 -1.68 16 14 C -0.11 -1.81 10.04 22.35 0.22 -1.59 16 15 C -0.10 -1.98 6.11 -19.75 -0.12 -2.10 16 16 C -0.05 -0.79 6.57 30.07 0.20 -0.59 16 17 C -0.11 -2.41 6.55 -10.49 -0.07 -2.48 16 18 H 0.13 2.99 7.80 -2.38 -0.02 2.97 16 19 C -0.13 -4.62 4.96 30.67 0.15 -4.47 16 20 C 0.18 8.24 5.02 86.36 0.43 8.67 16 21 N -0.61 -30.48 2.99 -698.28 -2.09 -32.56 16 22 C -0.26 -14.73 9.58 84.03 0.81 -13.93 16 23 H 0.06 3.28 7.89 -2.91 -0.02 3.25 16 24 C -0.04 -2.46 4.92 84.86 0.42 -2.05 16 25 N -0.93 -53.84 11.18 21.65 0.24 -53.59 16 26 Si 0.96 44.86 29.59 68.60 2.03 46.89 16 27 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 28 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 29 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 30 C 0.15 6.85 6.28 86.51 0.54 7.39 16 31 C -0.13 -4.90 4.68 30.82 0.14 -4.75 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.95 6.17 -2.39 -0.01 1.94 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 35 H 0.40 12.16 7.27 -92.71 -0.67 11.48 16 36 H 0.11 2.90 8.06 -2.91 -0.02 2.88 16 37 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 38 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 39 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 40 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.06 2.98 6.04 -2.39 -0.01 2.96 16 45 H 0.01 0.25 6.95 -2.38 -0.02 0.23 16 46 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 47 H 0.01 0.24 7.74 -2.38 -0.02 0.22 16 48 H 0.04 1.80 7.93 -2.38 -0.02 1.78 16 49 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 50 H 0.07 2.70 6.20 -2.39 -0.01 2.69 16 Total: -1.00 -66.43 388.77 3.05 -63.38 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: 0.27 Total: 31.34 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: 4.36 Total: -11.79 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -3.57 Total: -109.78 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.04 Total: -20.03 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -66.43 3.05 -63.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045582453.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.385 kcal (2) G-P(sol) polarization free energy of solvation -66.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds