Wall clock time and date at job start Sat Apr 11 2020 06:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46495 * 109.46291 * 2 1 4 4 C 1.34781 * 119.99593 * 60.02795 * 3 2 1 5 5 O 1.21279 * 120.00323 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99664 * 179.97438 * 4 3 2 7 7 H 1.08998 * 115.53882 * 325.79837 * 6 4 3 8 8 C 1.53045 * 117.47822 * 180.21653 * 6 4 3 9 9 H 1.08997 * 119.41022 * 140.81795 * 8 6 4 10 10 C 1.53439 * 118.57662 * 343.83904 * 8 6 4 11 11 C 1.50969 * 107.03898 * 296.78751 * 10 8 6 12 12 C 1.38784 * 129.71969 * 179.35280 * 11 10 8 13 13 C 1.38017 * 120.31206 * 180.33771 * 12 11 10 14 14 C 1.38251 * 119.87746 * 0.26417 * 13 12 11 15 15 C 1.38020 * 119.88774 * 359.97438 * 14 13 12 16 16 C 1.37815 * 110.46108 * 0.08882 * 11 10 8 17 17 C 1.50944 * 110.47853 * 359.53293 * 16 11 10 18 18 H 1.08994 * 117.16218 * 220.30682 * 17 16 11 19 19 C 1.53043 * 109.44750 * 119.97089 * 2 1 3 20 20 C 1.53191 * 109.31270 * 181.37586 * 19 2 1 21 21 N 1.46924 * 108.77505 * 305.36751 * 20 19 2 22 22 C 1.36941 * 120.62848 * 233.58379 * 21 20 19 23 23 H 1.08009 * 119.99679 * 27.69106 * 22 21 20 24 24 C 1.38810 * 120.00211 * 207.69228 * 22 21 20 25 25 N 1.31612 * 120.00267 * 17.36645 * 24 22 21 26 26 Si 1.86807 * 119.99909 * 197.36891 * 24 22 21 27 27 H 1.48502 * 109.47111 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47208 * 119.99816 * 26 24 22 29 29 H 1.48506 * 109.46656 * 239.99763 * 26 24 22 30 30 C 1.46922 * 118.74577 * 53.60725 * 21 20 19 31 31 C 1.53051 * 109.45913 * 240.02861 * 2 1 3 32 32 H 1.09004 * 109.46960 * 59.99711 * 1 2 3 33 33 H 1.08998 * 109.47595 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46967 * 299.99840 * 1 2 3 35 35 H 0.96999 * 120.00558 * 240.02511 * 3 2 1 36 36 H 1.09000 * 109.92229 * 56.32911 * 10 8 6 37 37 H 1.08999 * 109.91995 * 177.43113 * 10 8 6 38 38 H 1.08003 * 119.84407 * 0.61217 * 12 11 10 39 39 H 1.07995 * 120.06651 * 180.28527 * 13 12 11 40 40 H 1.07999 * 120.05901 * 179.97438 * 14 13 12 41 41 H 1.07999 * 119.84698 * 179.97438 * 15 14 13 42 42 H 1.08996 * 109.49375 * 301.32564 * 19 2 1 43 43 H 1.08998 * 109.49813 * 61.42893 * 19 2 1 44 44 H 1.08999 * 109.59037 * 185.57746 * 20 19 2 45 45 H 1.09007 * 109.58482 * 65.15113 * 20 19 2 46 46 H 0.96996 * 120.00862 * 180.02562 * 25 24 22 47 47 H 1.08997 * 109.59199 * 186.60812 * 30 21 20 48 48 H 1.08998 * 109.58499 * 66.17709 * 30 21 20 49 49 H 1.08998 * 109.49272 * 298.57994 * 31 2 1 50 50 H 1.08997 * 109.49309 * 58.68180 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3812 0.0000 4 6 1.6928 2.2109 1.0112 5 8 0.9956 1.8141 1.9208 6 6 2.1954 3.6316 1.0115 7 1 3.1868 3.7795 0.5833 8 6 1.7953 4.5220 2.1903 9 1 2.5230 5.2190 2.6057 10 6 0.6340 4.0739 3.0875 11 6 -0.6045 4.0413 2.2247 12 6 -1.9063 3.6916 2.5549 13 6 -2.9006 3.7253 1.5982 14 6 -2.5979 4.1039 0.3035 15 6 -1.3028 4.4472 -0.0278 16 6 -0.3018 4.4148 0.9332 17 6 1.1659 4.7445 0.8089 18 1 1.4324 5.6050 0.1953 19 6 2.0395 -0.7209 1.2501 20 6 3.5710 -0.6891 1.2645 21 7 4.0675 -1.2494 0.0002 22 6 4.9759 -2.2742 0.0003 23 1 5.0088 -2.9665 0.8287 24 6 5.8543 -2.4231 -1.0641 25 7 6.0605 -1.4213 -1.8924 26 14 6.7438 -4.0456 -1.3210 27 1 6.3419 -5.0039 -0.2602 28 1 6.3868 -4.6007 -2.6513 29 1 8.2105 -3.8217 -1.2554 30 6 3.5714 -0.6891 -1.2641 31 6 2.0398 -0.7209 -1.2501 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 2.5754 1.6988 -0.7276 36 1 0.8367 3.0810 3.4890 37 1 0.4998 4.7840 3.9035 38 1 -2.1434 3.3960 3.5663 39 1 -3.9132 3.4569 1.8606 40 1 -3.3736 4.1309 -0.4476 41 1 -1.0670 4.7424 -1.0395 42 1 1.6569 -0.2208 2.1398 43 1 1.6973 -1.7557 1.2383 44 1 3.9412 -1.2852 2.0986 45 1 3.9142 0.3404 1.3676 46 1 6.6740 -1.5254 -2.6364 47 1 3.9416 -1.2851 -2.0982 48 1 3.9145 0.3403 -1.3671 49 1 1.6975 -1.7557 -1.2383 50 1 1.6574 -0.2207 -2.1398 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045582456.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:44 Heat of formation + Delta-G solvation = 47.553468 kcal Electronic energy + Delta-G solvation = -31037.206991 eV Core-core repulsion = 27223.615725 eV Total energy + Delta-G solvation = -3813.591266 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.29216 -39.50581 -37.65578 -36.31141 -34.30582 -32.21449 -31.57213 -30.85994 -30.33331 -29.86785 -27.68525 -27.37994 -24.68159 -23.99080 -22.66805 -22.24361 -21.38640 -20.77054 -20.42331 -19.54768 -18.60607 -17.11159 -16.82726 -16.03592 -15.74158 -15.04965 -14.93735 -14.81234 -14.48722 -14.34837 -13.83700 -13.63139 -13.40340 -13.38232 -13.11456 -13.05076 -12.97957 -12.64568 -12.48376 -12.14681 -11.85816 -11.66901 -11.58688 -11.30620 -11.25698 -11.18425 -10.90741 -10.83001 -10.73219 -10.60598 -10.35225 -10.26770 -10.21400 -9.85672 -9.64739 -9.54683 -8.93886 -8.66150 -8.60598 -8.47286 -8.34367 -6.65480 -5.79570 -3.20316 1.31254 1.43692 2.79006 3.36454 3.44783 3.47239 3.50147 3.58510 3.87443 4.32120 4.50117 4.50350 4.78903 4.84210 4.99654 5.03147 5.06189 5.13309 5.33145 5.36422 5.43396 5.45819 5.50457 5.56497 5.58964 5.66736 5.74801 5.77781 5.84736 5.97262 6.05306 6.10166 6.12714 6.24193 6.28377 6.37134 6.38580 6.44616 6.48622 6.50518 6.56634 6.69233 6.73915 6.77095 6.87039 7.00284 7.01256 7.16706 7.31479 7.59450 7.79761 8.02004 8.44989 8.68368 9.21695 9.85509 10.42469 11.28949 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021790 B = 0.003028 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.666828 B = 9243.991538 C = 9531.213250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.187 3.813 3 N -0.705 5.705 4 C 0.545 3.455 5 O -0.532 6.532 6 C -0.155 4.155 7 H 0.132 0.868 8 C -0.120 4.120 9 H 0.127 0.873 10 C -0.060 4.060 11 C -0.052 4.052 12 C -0.110 4.110 13 C -0.116 4.116 14 C -0.131 4.131 15 C -0.098 4.098 16 C -0.079 4.079 17 C -0.102 4.102 18 H 0.122 0.878 19 C -0.141 4.141 20 C 0.152 3.848 21 N -0.591 5.591 22 C -0.248 4.248 23 H 0.065 0.935 24 C 0.001 3.999 25 N -0.904 5.904 26 Si 0.900 3.100 27 H -0.278 1.278 28 H -0.289 1.289 29 H -0.291 1.291 30 C 0.173 3.827 31 C -0.146 4.146 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.398 0.602 36 H 0.113 0.887 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.049 0.951 45 H 0.015 0.985 46 H 0.252 0.748 47 H 0.088 0.912 48 H 0.015 0.985 49 H 0.070 0.930 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.299 14.031 4.543 20.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.102 3.898 3 N -0.356 5.356 4 C 0.331 3.669 5 O -0.410 6.410 6 C -0.176 4.176 7 H 0.150 0.850 8 C -0.138 4.138 9 H 0.145 0.855 10 C -0.097 4.097 11 C -0.052 4.052 12 C -0.128 4.128 13 C -0.134 4.134 14 C -0.149 4.149 15 C -0.116 4.116 16 C -0.079 4.079 17 C -0.120 4.120 18 H 0.140 0.860 19 C -0.181 4.181 20 C 0.025 3.975 21 N -0.314 5.314 22 C -0.378 4.378 23 H 0.083 0.917 24 C -0.197 4.197 25 N -0.549 5.549 26 Si 0.730 3.270 27 H -0.203 1.203 28 H -0.216 1.216 29 H -0.218 1.218 30 C 0.047 3.953 31 C -0.186 4.186 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.233 0.767 36 H 0.131 0.869 37 H 0.092 0.908 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.134 0.866 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.033 0.967 46 H 0.062 0.938 47 H 0.107 0.893 48 H 0.033 0.967 49 H 0.088 0.912 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.680 13.715 5.064 20.718 hybrid contribution 0.892 -0.676 -0.880 1.424 sum -13.787 13.039 4.184 19.432 Atomic orbital electron populations 1.22191 0.95531 1.01495 1.02309 1.20212 0.92447 0.80195 0.96941 1.46098 1.52850 1.11964 1.24674 1.19419 0.79885 0.85559 0.82044 1.90550 1.38089 1.76648 1.35739 1.22455 1.00036 0.90704 1.04436 0.85030 1.22877 0.99968 1.01309 0.89673 0.85498 1.20427 0.88934 1.03802 0.96501 1.20341 0.94066 0.95875 0.94903 1.20578 0.91847 1.00791 0.99607 1.20970 0.98924 1.00101 0.93370 1.20916 0.96166 1.01271 0.96577 1.20617 0.92352 1.00137 0.98492 1.19586 0.92976 1.01134 0.94225 1.21426 0.89310 0.99327 1.01964 0.86006 1.22377 0.98881 0.99499 0.97366 1.20822 0.90928 0.96014 0.89695 1.44053 1.48188 1.39685 0.99471 1.19251 1.09593 1.02904 1.06047 0.91726 1.25002 0.97269 0.97444 1.00011 1.70024 1.37912 1.28965 1.18020 0.86250 0.79142 0.83821 0.77745 1.20288 1.21605 1.21803 1.20726 0.86845 0.96996 0.90723 1.22523 1.01403 0.99937 0.94713 0.93627 0.92607 0.90859 0.76674 0.86949 0.90818 0.86495 0.86241 0.86247 0.86603 0.90873 0.92102 0.93272 0.96725 0.93786 0.89349 0.96677 0.91183 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 8.40 37.16 0.31 -2.19 16 2 C 0.19 3.21 0.66 -131.77 -0.09 3.12 16 3 N -0.71 -11.18 4.10 -47.56 -0.19 -11.37 16 4 C 0.54 8.35 6.34 -10.98 -0.07 8.28 16 5 O -0.53 -9.08 8.76 5.56 0.05 -9.03 16 6 C -0.16 -1.90 6.18 -91.77 -0.57 -2.47 16 7 H 0.13 1.42 8.14 -51.93 -0.42 0.99 16 8 C -0.12 -1.31 7.06 -90.15 -0.64 -1.94 16 9 H 0.13 1.09 8.14 -51.93 -0.42 0.66 16 10 C -0.06 -0.72 5.76 -27.52 -0.16 -0.88 16 11 C -0.05 -0.67 4.89 -104.44 -0.51 -1.18 16 12 C -0.11 -1.33 10.04 -39.46 -0.40 -1.73 16 13 C -0.12 -1.28 10.05 -39.66 -0.40 -1.68 16 14 C -0.13 -1.44 10.05 -39.66 -0.40 -1.84 16 15 C -0.10 -1.15 10.04 -39.46 -0.40 -1.55 16 16 C -0.08 -1.00 5.27 -104.45 -0.55 -1.55 16 17 C -0.10 -1.13 6.85 -91.46 -0.63 -1.75 16 18 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 19 C -0.14 -2.68 4.67 -26.61 -0.12 -2.80 16 20 C 0.15 3.29 6.26 -3.71 -0.02 3.27 16 21 N -0.59 -14.58 2.99 -172.32 -0.52 -15.10 16 22 C -0.25 -6.79 9.58 -15.06 -0.14 -6.93 16 23 H 0.07 1.76 7.89 -52.48 -0.41 1.35 16 24 C 0.00 0.02 4.91 -17.43 -0.09 -0.06 16 25 N -0.90 -25.68 11.19 55.49 0.62 -25.06 16 26 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 30 C 0.17 3.93 5.04 -3.71 -0.02 3.91 16 31 C -0.15 -2.69 4.96 -26.60 -0.13 -2.83 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.27 6.17 -51.93 -0.32 0.95 16 35 H 0.40 6.06 7.27 -40.82 -0.30 5.77 16 36 H 0.11 1.57 6.21 -51.93 -0.32 1.25 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 39 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.07 1.40 6.20 -51.93 -0.32 1.07 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 45 H 0.01 0.33 7.74 -51.93 -0.40 -0.07 16 46 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 47 H 0.09 2.28 6.04 -51.93 -0.31 1.97 16 48 H 0.02 0.35 6.94 -51.93 -0.36 -0.01 16 49 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 50 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 381.14 15.07 5.74 5.74 Total: -1.00 -30.47 381.14 -12.13 -42.61 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -7.79 Total: 8.43 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -5.01 Total: -12.79 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: -0.09 Total: -51.52 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.05 Total: -9.03 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.47 -12.13 -42.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045582456.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.160 kcal (2) G-P(sol) polarization free energy of solvation -30.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds