Wall clock time and date at job start Sat Apr 11 2020 06:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46495 * 109.46291 * 2 1 4 4 C 1.34781 * 119.99593 * 60.02795 * 3 2 1 5 5 O 1.21279 * 120.00323 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99664 * 179.97438 * 4 3 2 7 7 H 1.08998 * 115.53882 * 325.79837 * 6 4 3 8 8 C 1.53045 * 117.47822 * 180.21653 * 6 4 3 9 9 H 1.08997 * 119.41022 * 140.81795 * 8 6 4 10 10 C 1.53439 * 118.57662 * 343.83904 * 8 6 4 11 11 C 1.50969 * 107.03898 * 296.78751 * 10 8 6 12 12 C 1.38784 * 129.71969 * 179.35280 * 11 10 8 13 13 C 1.38017 * 120.31206 * 180.33771 * 12 11 10 14 14 C 1.38251 * 119.87746 * 0.26417 * 13 12 11 15 15 C 1.38020 * 119.88774 * 359.97438 * 14 13 12 16 16 C 1.37815 * 110.46108 * 0.08882 * 11 10 8 17 17 C 1.50944 * 110.47853 * 359.53293 * 16 11 10 18 18 H 1.08994 * 117.16218 * 220.30682 * 17 16 11 19 19 C 1.53043 * 109.44750 * 119.97089 * 2 1 3 20 20 C 1.53191 * 109.31270 * 181.37586 * 19 2 1 21 21 N 1.46924 * 108.77505 * 305.36751 * 20 19 2 22 22 C 1.36941 * 120.62848 * 233.58379 * 21 20 19 23 23 H 1.08009 * 119.99679 * 27.69106 * 22 21 20 24 24 C 1.38810 * 120.00211 * 207.69228 * 22 21 20 25 25 N 1.31612 * 120.00267 * 17.36645 * 24 22 21 26 26 Si 1.86807 * 119.99909 * 197.36891 * 24 22 21 27 27 H 1.48502 * 109.47111 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47208 * 119.99816 * 26 24 22 29 29 H 1.48506 * 109.46656 * 239.99763 * 26 24 22 30 30 C 1.46922 * 118.74577 * 53.60725 * 21 20 19 31 31 C 1.53051 * 109.45913 * 240.02861 * 2 1 3 32 32 H 1.09004 * 109.46960 * 59.99711 * 1 2 3 33 33 H 1.08998 * 109.47595 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46967 * 299.99840 * 1 2 3 35 35 H 0.96999 * 120.00558 * 240.02511 * 3 2 1 36 36 H 1.09000 * 109.92229 * 56.32911 * 10 8 6 37 37 H 1.08999 * 109.91995 * 177.43113 * 10 8 6 38 38 H 1.08003 * 119.84407 * 0.61217 * 12 11 10 39 39 H 1.07995 * 120.06651 * 180.28527 * 13 12 11 40 40 H 1.07999 * 120.05901 * 179.97438 * 14 13 12 41 41 H 1.07999 * 119.84698 * 179.97438 * 15 14 13 42 42 H 1.08996 * 109.49375 * 301.32564 * 19 2 1 43 43 H 1.08998 * 109.49813 * 61.42893 * 19 2 1 44 44 H 1.08999 * 109.59037 * 185.57746 * 20 19 2 45 45 H 1.09007 * 109.58482 * 65.15113 * 20 19 2 46 46 H 0.96996 * 120.00862 * 180.02562 * 25 24 22 47 47 H 1.08997 * 109.59199 * 186.60812 * 30 21 20 48 48 H 1.08998 * 109.58499 * 66.17709 * 30 21 20 49 49 H 1.08998 * 109.49272 * 298.57994 * 31 2 1 50 50 H 1.08997 * 109.49309 * 58.68180 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3812 0.0000 4 6 1.6928 2.2109 1.0112 5 8 0.9956 1.8141 1.9208 6 6 2.1954 3.6316 1.0115 7 1 3.1868 3.7795 0.5833 8 6 1.7953 4.5220 2.1903 9 1 2.5230 5.2190 2.6057 10 6 0.6340 4.0739 3.0875 11 6 -0.6045 4.0413 2.2247 12 6 -1.9063 3.6916 2.5549 13 6 -2.9006 3.7253 1.5982 14 6 -2.5979 4.1039 0.3035 15 6 -1.3028 4.4472 -0.0278 16 6 -0.3018 4.4148 0.9332 17 6 1.1659 4.7445 0.8089 18 1 1.4324 5.6050 0.1953 19 6 2.0395 -0.7209 1.2501 20 6 3.5710 -0.6891 1.2645 21 7 4.0675 -1.2494 0.0002 22 6 4.9759 -2.2742 0.0003 23 1 5.0088 -2.9665 0.8287 24 6 5.8543 -2.4231 -1.0641 25 7 6.0605 -1.4213 -1.8924 26 14 6.7438 -4.0456 -1.3210 27 1 6.3419 -5.0039 -0.2602 28 1 6.3868 -4.6007 -2.6513 29 1 8.2105 -3.8217 -1.2554 30 6 3.5714 -0.6891 -1.2641 31 6 2.0398 -0.7209 -1.2501 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 2.5754 1.6988 -0.7276 36 1 0.8367 3.0810 3.4890 37 1 0.4998 4.7840 3.9035 38 1 -2.1434 3.3960 3.5663 39 1 -3.9132 3.4569 1.8606 40 1 -3.3736 4.1309 -0.4476 41 1 -1.0670 4.7424 -1.0395 42 1 1.6569 -0.2208 2.1398 43 1 1.6973 -1.7557 1.2383 44 1 3.9412 -1.2852 2.0986 45 1 3.9142 0.3404 1.3676 46 1 6.6740 -1.5254 -2.6364 47 1 3.9416 -1.2851 -2.0982 48 1 3.9145 0.3403 -1.3671 49 1 1.6975 -1.7557 -1.2383 50 1 1.6574 -0.2207 -2.1398 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045582456.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:43 Heat of formation + Delta-G solvation = 33.127530 kcal Electronic energy + Delta-G solvation = -31037.832547 eV Core-core repulsion = 27223.615725 eV Total energy + Delta-G solvation = -3814.216821 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.27106 -40.77576 -38.86660 -37.46754 -35.96615 -33.71141 -32.81806 -32.17433 -31.61542 -31.26040 -29.08439 -28.55590 -26.01068 -25.53636 -23.95110 -23.59641 -22.61452 -22.11922 -21.27281 -20.72938 -20.08519 -18.71088 -18.10068 -17.01778 -16.83753 -16.69254 -16.19235 -15.92000 -15.78873 -15.64806 -15.37227 -15.15987 -14.83740 -14.65115 -14.50168 -14.24763 -14.06083 -13.90631 -13.51336 -13.33415 -13.19060 -13.06647 -12.95725 -12.84233 -12.65643 -12.61940 -12.54683 -12.15439 -12.12461 -11.98546 -11.77175 -11.68308 -11.48950 -11.31214 -11.27058 -11.07920 -10.53828 -10.13917 -9.85032 -9.57300 -9.29365 -8.65631 -7.87496 -5.31146 0.44338 0.56736 1.45358 1.48101 1.58002 1.70088 2.33447 2.51371 2.64656 3.00514 3.27082 3.43709 3.62689 3.68905 3.78085 3.90363 4.02676 4.05729 4.14812 4.17912 4.20918 4.22257 4.30556 4.48387 4.57481 4.63028 4.65032 4.72593 4.75093 4.81462 4.87389 4.87867 4.91280 4.94853 4.98194 5.02525 5.13279 5.17108 5.22790 5.26566 5.30071 5.36448 5.42584 5.49212 5.59795 5.64227 5.65714 5.73743 5.80877 5.84243 6.17763 6.39535 6.78825 7.16266 7.48568 7.86592 8.38519 9.18352 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021790 B = 0.003028 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.666828 B = 9243.991538 C = 9531.213250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.193 3.807 3 N -0.708 5.708 4 C 0.539 3.461 5 O -0.551 6.551 6 C -0.168 4.168 7 H 0.147 0.853 8 C -0.117 4.117 9 H 0.154 0.846 10 C -0.061 4.061 11 C -0.071 4.071 12 C -0.129 4.129 13 C -0.121 4.121 14 C -0.137 4.137 15 C -0.110 4.110 16 C -0.097 4.097 17 C -0.092 4.092 18 H 0.146 0.854 19 C -0.129 4.129 20 C 0.155 3.845 21 N -0.606 5.606 22 C -0.264 4.264 23 H 0.059 0.941 24 C -0.044 4.044 25 N -0.928 5.928 26 Si 0.963 3.037 27 H -0.272 1.272 28 H -0.288 1.288 29 H -0.292 1.292 30 C 0.181 3.819 31 C -0.132 4.132 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.402 0.598 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.123 0.877 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.130 0.870 42 H 0.072 0.928 43 H 0.056 0.944 44 H 0.039 0.961 45 H 0.009 0.991 46 H 0.250 0.750 47 H 0.055 0.945 48 H 0.009 0.991 49 H 0.064 0.936 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.315 14.945 4.105 21.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.107 3.893 3 N -0.359 5.359 4 C 0.327 3.673 5 O -0.431 6.431 6 C -0.189 4.189 7 H 0.164 0.836 8 C -0.135 4.135 9 H 0.171 0.829 10 C -0.097 4.097 11 C -0.071 4.071 12 C -0.147 4.147 13 C -0.139 4.139 14 C -0.155 4.155 15 C -0.128 4.128 16 C -0.097 4.097 17 C -0.110 4.110 18 H 0.164 0.836 19 C -0.168 4.168 20 C 0.030 3.970 21 N -0.329 5.329 22 C -0.395 4.395 23 H 0.076 0.924 24 C -0.240 4.240 25 N -0.574 5.574 26 Si 0.791 3.209 27 H -0.196 1.196 28 H -0.214 1.214 29 H -0.219 1.219 30 C 0.056 3.944 31 C -0.171 4.171 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.237 0.763 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.141 0.859 39 H 0.158 0.842 40 H 0.160 0.840 41 H 0.148 0.852 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.027 0.973 46 H 0.060 0.940 47 H 0.074 0.926 48 H 0.027 0.973 49 H 0.083 0.917 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.712 14.642 4.639 21.972 hybrid contribution 1.168 -0.948 -0.682 1.651 sum -14.543 13.695 3.957 20.365 Atomic orbital electron populations 1.22040 0.94059 1.01955 1.02149 1.20047 0.93341 0.80804 0.95089 1.46090 1.53143 1.11425 1.25219 1.19958 0.79353 0.86653 0.81313 1.90553 1.38908 1.77313 1.36283 1.22490 1.01086 0.88966 1.06355 0.83563 1.23064 1.00022 1.00890 0.89495 0.82852 1.20413 0.89299 1.02853 0.97171 1.20574 0.94569 0.96487 0.95491 1.20847 0.92177 1.01234 1.00426 1.21288 0.99755 0.99528 0.93333 1.21254 0.96589 1.00534 0.97091 1.20913 0.92628 1.00116 0.99130 1.19866 0.93942 1.01592 0.94337 1.21536 0.88286 0.98993 1.02176 0.83627 1.22212 0.96546 0.99554 0.98519 1.20818 0.92719 0.95152 0.88327 1.44265 1.48167 1.39590 1.00908 1.19487 1.10221 1.03648 1.06097 0.92352 1.25674 0.98206 1.00240 0.99898 1.70148 1.38522 1.30451 1.18326 0.85283 0.77680 0.80337 0.77579 1.19626 1.21426 1.21931 1.20560 0.89453 0.95602 0.88812 1.22327 0.98054 1.00257 0.96509 0.92546 0.91851 0.92137 0.76317 0.89482 0.89168 0.85863 0.84164 0.84043 0.85190 0.90954 0.92559 0.94271 0.97266 0.94042 0.92635 0.97329 0.91724 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.35 8.40 71.98 0.60 -3.74 16 2 C 0.19 6.43 0.66 3.64 0.00 6.43 16 3 N -0.71 -21.77 4.10 -422.78 -1.73 -23.50 16 4 C 0.54 16.10 6.34 87.66 0.56 16.65 16 5 O -0.55 -18.66 8.76 -3.03 -0.03 -18.68 16 6 C -0.17 -3.85 6.18 -11.54 -0.07 -3.93 16 7 H 0.15 2.88 8.14 -2.39 -0.02 2.86 16 8 C -0.12 -2.33 7.06 -10.49 -0.07 -2.40 16 9 H 0.15 2.20 8.14 -2.39 -0.02 2.18 16 10 C -0.06 -1.40 5.76 30.08 0.17 -1.23 16 11 C -0.07 -1.77 4.89 -19.75 -0.10 -1.87 16 12 C -0.13 -3.03 10.04 22.35 0.22 -2.80 16 13 C -0.12 -2.50 10.05 22.22 0.22 -2.28 16 14 C -0.14 -2.74 10.05 22.22 0.22 -2.52 16 15 C -0.11 -2.39 10.04 22.35 0.22 -2.16 16 16 C -0.10 -2.30 5.27 -19.75 -0.10 -2.40 16 17 C -0.09 -1.83 6.85 -11.34 -0.08 -1.91 16 18 H 0.15 2.18 8.14 -2.39 -0.02 2.16 16 19 C -0.13 -4.84 4.67 30.67 0.14 -4.70 16 20 C 0.16 6.83 6.26 86.36 0.54 7.37 16 21 N -0.61 -30.25 2.99 -699.10 -2.09 -32.34 16 22 C -0.26 -14.64 9.58 84.03 0.81 -13.83 16 23 H 0.06 3.23 7.89 -2.91 -0.02 3.21 16 24 C -0.04 -2.45 4.91 84.86 0.42 -2.04 16 25 N -0.93 -53.35 11.19 21.65 0.24 -53.11 16 26 Si 0.96 44.69 29.59 68.60 2.03 46.71 16 27 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 28 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 29 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 30 C 0.18 8.28 5.04 86.36 0.43 8.71 16 31 C -0.13 -4.74 4.96 30.68 0.15 -4.59 16 32 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 2.02 6.17 -2.39 -0.01 2.01 16 35 H 0.40 11.83 7.27 -92.71 -0.67 11.15 16 36 H 0.09 2.46 6.21 -2.39 -0.01 2.45 16 37 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.12 2.57 8.06 -2.91 -0.02 2.55 16 39 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 40 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 41 H 0.13 2.34 8.06 -2.91 -0.02 2.31 16 42 H 0.07 2.76 6.20 -2.39 -0.01 2.74 16 43 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.04 1.75 7.93 -2.39 -0.02 1.73 16 45 H 0.01 0.42 7.74 -2.38 -0.02 0.40 16 46 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 47 H 0.06 2.91 6.04 -2.39 -0.01 2.90 16 48 H 0.01 0.40 6.94 -2.39 -0.02 0.39 16 49 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 50 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -65.67 381.14 2.99 -62.68 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: 0.27 Total: 31.47 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 4.30 Total: -13.22 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -3.58 Total: -108.95 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.03 Total: -18.68 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -65.67 2.99 -62.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045582456.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.804 kcal (2) G-P(sol) polarization free energy of solvation -65.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds