Wall clock time and date at job start Sat Apr 11 2020 06:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 115.54683 * 2 1 4 4 C 1.37978 * 120.07415 * 245.57054 * 3 2 1 5 5 C 1.38335 * 120.14719 * 180.02562 * 4 3 2 6 6 C 1.38386 * 120.28877 * 359.97438 * 5 4 3 7 7 C 1.37932 * 120.14750 * 359.97438 * 6 5 4 8 8 C 1.39562 * 120.07230 * 65.30801 * 3 2 1 9 9 C 1.47843 * 120.14327 * 359.97438 * 8 3 2 10 10 O 1.21544 * 120.00258 * 46.96432 * 9 8 3 11 11 N 1.34784 * 119.99670 * 226.96751 * 9 8 3 12 12 C 1.46661 * 125.33706 * 175.22620 * 11 9 8 13 13 C 1.53725 * 107.94182 * 180.54290 * 12 11 9 14 14 H 1.08996 * 112.56269 * 139.72226 * 13 12 11 15 15 C 1.53695 * 109.34310 * 266.25234 * 13 12 11 16 16 N 1.46637 * 108.00911 * 127.55326 * 15 13 12 17 17 C 1.36939 * 125.32799 * 180.81699 * 16 15 13 18 18 H 1.08000 * 119.99806 * 180.02562 * 17 16 15 19 19 C 1.38808 * 119.99860 * 0.02562 * 17 16 15 20 20 N 1.31621 * 120.00354 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99714 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47370 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47065 * 120.00496 * 21 19 17 24 24 H 1.48504 * 109.47337 * 240.00175 * 21 19 17 25 25 C 1.46745 * 109.34223 * 0.84260 * 16 15 13 26 26 C 1.53928 * 106.71921 * 341.65622 * 25 16 15 27 27 H 1.08997 * 113.00944 * 150.83778 * 26 25 16 28 28 C 1.46776 * 125.33508 * 354.91949 * 11 9 8 29 29 C 1.53001 * 117.49683 * 214.33130 * 2 1 3 30 30 C 1.52999 * 117.49880 * 145.66976 * 2 1 3 31 31 H 1.09005 * 109.46857 * 54.46714 * 1 2 3 32 32 H 1.08992 * 109.47193 * 294.46866 * 1 2 3 33 33 H 1.08994 * 109.46949 * 174.46400 * 1 2 3 34 34 H 1.08002 * 119.92496 * 359.97438 * 4 3 2 35 35 H 1.07995 * 119.85617 * 179.97438 * 5 4 3 36 36 H 1.08002 * 119.92043 * 179.97438 * 6 5 4 37 37 H 1.08000 * 120.07116 * 180.02562 * 7 6 5 38 38 H 1.08996 * 109.77665 * 300.16367 * 12 11 9 39 39 H 1.09003 * 109.77498 * 60.92390 * 12 11 9 40 40 H 1.08997 * 109.75979 * 247.20033 * 15 13 12 41 41 H 1.08999 * 109.75739 * 7.91758 * 15 13 12 42 42 H 0.96993 * 120.00058 * 179.97438 * 20 19 17 43 43 H 1.09003 * 110.00842 * 222.33774 * 25 16 15 44 44 H 1.09000 * 110.01005 * 100.97461 * 25 16 15 45 45 H 1.08999 * 110.02885 * 280.77377 * 28 11 9 46 46 H 1.09002 * 110.03347 * 42.19346 * 28 11 9 47 47 H 1.08996 * 117.49982 * 0.02562 * 29 2 1 48 48 H 1.08999 * 117.49707 * 145.02600 * 29 2 1 49 49 H 1.09000 * 117.50030 * 214.98095 * 30 2 1 50 50 H 1.09005 * 117.49489 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1800 1.3597 0.0000 4 6 2.9237 1.7705 -1.0871 5 6 3.5213 3.0181 -1.0885 6 6 3.3774 3.8622 -0.0014 7 6 2.6358 3.4641 1.0913 8 6 2.0263 2.2082 1.0973 9 6 1.2256 1.7770 2.2629 10 8 1.3923 0.6713 2.7393 11 7 0.3105 2.6100 2.7971 12 6 -0.6131 2.2705 3.8846 13 6 -1.4848 3.5046 4.1682 14 1 -2.5256 3.2457 4.3624 15 6 -0.8484 4.3284 5.2989 16 7 -0.7189 5.7129 4.8335 17 6 -0.1802 6.7440 5.5559 18 1 -0.1277 7.7340 5.1274 19 6 0.2983 6.5168 6.8390 20 7 0.2348 5.3103 7.3611 21 14 1.0339 7.9233 7.8241 22 1 0.9891 9.1692 7.0174 23 1 0.2532 8.1143 9.0728 24 1 2.4435 7.6044 8.1655 25 6 -1.2575 5.8207 3.4728 26 6 -1.3122 4.3915 2.9037 27 1 -2.1071 4.2550 2.1705 28 6 0.0865 4.0011 2.3860 29 6 2.2365 -1.1207 -0.7654 30 6 2.2365 -1.1207 0.7654 31 1 -0.3633 0.5973 -0.8363 32 1 -0.3633 0.4256 0.9353 33 1 -0.3633 -1.0228 -0.0991 34 1 3.0401 1.1163 -1.9385 35 1 4.1028 3.3348 -1.9417 36 1 3.8470 4.8348 -0.0086 37 1 2.5239 4.1240 1.9389 38 1 -1.2445 1.4342 3.5847 39 1 -0.0486 2.0046 4.7784 40 1 -1.4853 4.2947 6.1828 41 1 0.1360 3.9266 5.5385 42 1 0.5695 5.1515 8.2575 43 1 -0.6029 6.4411 2.8606 44 1 -2.2592 6.2495 3.5010 45 1 0.8448 4.6476 2.8276 46 1 0.1161 4.0787 1.2992 47 1 1.6112 -1.8578 -1.2693 48 1 3.1716 -0.8748 -1.2685 49 1 3.1716 -0.8747 1.2686 50 1 1.6112 -1.8578 1.2693 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049052616.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:56 Heat of formation + Delta-G solvation = 51.941263 kcal Electronic energy + Delta-G solvation = -30756.846954 eV Core-core repulsion = 26943.445958 eV Total energy + Delta-G solvation = -3813.400997 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.71182 -39.42733 -37.72693 -37.20709 -34.88271 -32.37980 -31.51933 -30.76488 -29.96451 -29.40801 -28.52127 -25.76461 -25.49964 -24.08985 -23.24182 -22.65388 -21.86550 -20.13434 -20.03465 -19.25875 -18.97148 -17.33633 -16.75957 -16.40164 -16.00365 -15.63876 -15.16060 -14.79940 -14.51542 -14.31160 -14.20724 -13.91466 -13.71569 -13.24914 -13.13325 -12.97194 -12.76934 -12.46469 -12.33366 -12.26813 -12.01745 -11.97515 -11.64885 -11.50613 -11.47200 -11.32446 -11.06680 -10.89862 -10.84724 -10.44232 -10.37391 -10.10594 -10.07848 -9.96368 -9.87244 -9.66713 -9.47654 -8.97431 -8.75277 -8.62902 -8.26235 -6.86177 -5.74910 -3.08931 0.96385 1.26202 2.93875 3.25266 3.37680 3.43201 3.45869 3.64686 3.79895 4.43750 4.46808 4.57840 4.75993 4.80029 4.85184 4.91283 4.94733 5.04943 5.08789 5.26213 5.31540 5.39440 5.48564 5.56723 5.58785 5.64502 5.65936 5.69965 5.70833 5.76322 5.82304 5.88379 5.95896 5.99228 6.02892 6.12863 6.17413 6.18062 6.28851 6.31791 6.35018 6.39943 6.41069 6.55258 6.57295 6.65988 6.79952 6.81608 7.54331 7.55964 7.78950 7.80950 8.23750 8.41033 9.19185 9.79798 10.43227 11.36419 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015947 B = 0.003281 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.389189 B = 8531.197929 C = 9124.037637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.092 4.092 3 C -0.002 4.002 4 C -0.124 4.124 5 C -0.102 4.102 6 C -0.127 4.127 7 C -0.086 4.086 8 C -0.111 4.111 9 C 0.572 3.428 10 O -0.529 6.529 11 N -0.603 5.603 12 C 0.123 3.877 13 C -0.123 4.123 14 H 0.090 0.910 15 C 0.185 3.815 16 N -0.602 5.602 17 C -0.231 4.231 18 H 0.079 0.921 19 C -0.006 4.006 20 N -0.919 5.919 21 Si 0.911 3.089 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.145 3.855 26 C -0.111 4.111 27 H 0.089 0.911 28 C 0.113 3.887 29 C -0.182 4.182 30 C -0.130 4.130 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.044 0.956 41 H 0.051 0.949 42 H 0.252 0.748 43 H 0.037 0.963 44 H 0.020 0.980 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.094 0.906 48 H 0.093 0.907 49 H 0.093 0.907 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.847 -8.335 -18.601 20.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.092 4.092 3 C -0.002 4.002 4 C -0.142 4.142 5 C -0.121 4.121 6 C -0.145 4.145 7 C -0.105 4.105 8 C -0.114 4.114 9 C 0.361 3.639 10 O -0.407 6.407 11 N -0.335 5.335 12 C 0.000 4.000 13 C -0.143 4.143 14 H 0.108 0.892 15 C 0.060 3.940 16 N -0.329 5.329 17 C -0.359 4.359 18 H 0.097 0.903 19 C -0.203 4.203 20 N -0.567 5.567 21 Si 0.742 3.258 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.218 1.218 25 C 0.019 3.981 26 C -0.131 4.131 27 H 0.107 0.893 28 C -0.010 4.010 29 C -0.218 4.218 30 C -0.167 4.167 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.151 0.849 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.038 0.962 45 H 0.097 0.903 46 H 0.084 0.916 47 H 0.112 0.888 48 H 0.111 0.889 49 H 0.112 0.888 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.080 -8.946 -18.143 20.335 hybrid contribution 0.420 0.915 0.653 1.200 sum 2.500 -8.031 -17.489 19.407 Atomic orbital electron populations 1.21272 0.91354 1.01792 1.02054 1.20008 0.94553 0.87746 1.06926 1.19014 0.95525 0.93243 0.92461 1.20940 0.98488 0.96712 0.98012 1.21267 0.98637 0.93863 0.98286 1.21115 0.99553 1.00180 0.93634 1.21490 0.95774 0.94493 0.98712 1.19743 1.01477 0.95204 0.95015 1.17831 0.79190 0.84047 0.82840 1.90766 1.67050 1.20636 1.62198 1.48180 1.35883 1.13169 1.36295 1.21805 0.91126 0.97065 0.89976 1.23156 0.99134 0.94501 0.97480 0.89165 1.21111 0.98794 0.82824 0.91263 1.44220 1.71287 1.06143 1.11241 1.19067 1.32472 0.88656 0.95674 0.90339 1.24801 1.01298 0.96831 0.97335 1.69965 1.51570 1.19095 1.16040 0.86063 0.78580 0.81134 0.80072 1.20500 1.21747 1.21772 1.21161 0.96803 0.92485 0.87674 1.22948 0.95560 0.97683 0.96943 0.89265 1.22211 0.97845 0.82106 0.98840 1.23196 1.02124 1.00762 0.95759 1.22844 1.02132 0.99247 0.92512 0.92511 0.91917 0.92210 0.85574 0.85769 0.85424 0.84912 0.92413 0.90811 0.93768 0.93052 0.93741 0.94453 0.96244 0.90339 0.91645 0.88774 0.88904 0.88828 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 9.45 37.16 0.35 -0.94 16 2 C -0.09 -1.13 1.31 -155.66 -0.20 -1.34 16 3 C 0.00 -0.02 5.15 -104.22 -0.54 -0.56 16 4 C -0.12 -1.33 9.22 -39.64 -0.37 -1.69 16 5 C -0.10 -1.01 10.04 -39.49 -0.40 -1.41 16 6 C -0.13 -1.39 10.03 -39.64 -0.40 -1.79 16 7 C -0.09 -1.16 8.20 -39.19 -0.32 -1.48 16 8 C -0.11 -1.64 5.22 -104.97 -0.55 -2.19 16 9 C 0.57 9.77 5.45 -12.33 -0.07 9.71 16 10 O -0.53 -10.18 14.51 5.33 0.08 -10.10 16 11 N -0.60 -10.10 3.31 -173.28 -0.57 -10.68 16 12 C 0.12 2.11 6.24 -3.58 -0.02 2.09 16 13 C -0.12 -2.17 4.02 -88.60 -0.36 -2.52 16 14 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 15 C 0.18 4.29 4.75 -3.61 -0.02 4.27 16 16 N -0.60 -14.58 3.37 -171.93 -0.58 -15.15 16 17 C -0.23 -6.19 10.25 -15.06 -0.15 -6.35 16 18 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 19 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 20 N -0.92 -26.54 10.25 55.49 0.57 -25.97 16 21 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 C 0.15 2.78 6.37 -3.43 -0.02 2.75 16 26 C -0.11 -1.78 4.19 -88.25 -0.37 -2.15 16 27 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 28 C 0.11 1.77 4.65 -3.28 -0.02 1.75 16 29 C -0.18 -1.81 9.41 -26.69 -0.25 -2.06 16 30 C -0.13 -1.63 8.31 -26.69 -0.22 -1.85 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.88 6.32 -51.93 -0.33 0.55 16 33 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 34 H 0.13 1.09 7.02 -52.49 -0.37 0.72 16 35 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.13 1.86 6.34 -52.49 -0.33 1.53 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.42 7.44 -51.93 -0.39 1.04 16 40 H 0.04 1.15 7.46 -51.93 -0.39 0.77 16 41 H 0.05 1.36 6.50 -51.93 -0.34 1.02 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.04 0.69 7.95 -51.93 -0.41 0.27 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 1.39 6.66 -51.93 -0.35 1.05 16 46 H 0.07 0.90 7.27 -51.93 -0.38 0.52 16 47 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.09 0.83 7.14 -51.93 -0.37 0.46 16 49 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 50 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 385.64 15.07 5.81 5.81 Total: -1.00 -30.94 385.64 -11.57 -42.51 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -7.84 Total: 2.84 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -4.01 Total: -6.02 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.58 Total: -51.80 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.08 Total: -10.10 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.94 -11.57 -42.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049052616.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.453 kcal (2) G-P(sol) polarization free energy of solvation -30.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds