Wall clock time and date at job start Sat Apr 11 2020 06:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 115.54683 * 2 1 4 4 C 1.37978 * 120.07415 * 245.57054 * 3 2 1 5 5 C 1.38335 * 120.14719 * 180.02562 * 4 3 2 6 6 C 1.38386 * 120.28877 * 359.97438 * 5 4 3 7 7 C 1.37932 * 120.14750 * 359.97438 * 6 5 4 8 8 C 1.39562 * 120.07230 * 65.30801 * 3 2 1 9 9 C 1.47843 * 120.14327 * 359.97438 * 8 3 2 10 10 O 1.21544 * 120.00258 * 46.96432 * 9 8 3 11 11 N 1.34784 * 119.99670 * 226.96751 * 9 8 3 12 12 C 1.46661 * 125.33706 * 175.22620 * 11 9 8 13 13 C 1.53725 * 107.94182 * 180.54290 * 12 11 9 14 14 H 1.08996 * 112.56269 * 139.72226 * 13 12 11 15 15 C 1.53695 * 109.34310 * 266.25234 * 13 12 11 16 16 N 1.46637 * 108.00911 * 127.55326 * 15 13 12 17 17 C 1.36939 * 125.32799 * 180.81699 * 16 15 13 18 18 H 1.08000 * 119.99806 * 180.02562 * 17 16 15 19 19 C 1.38808 * 119.99860 * 0.02562 * 17 16 15 20 20 N 1.31621 * 120.00354 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99714 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47370 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47065 * 120.00496 * 21 19 17 24 24 H 1.48504 * 109.47337 * 240.00175 * 21 19 17 25 25 C 1.46745 * 109.34223 * 0.84260 * 16 15 13 26 26 C 1.53928 * 106.71921 * 341.65622 * 25 16 15 27 27 H 1.08997 * 113.00944 * 150.83778 * 26 25 16 28 28 C 1.46776 * 125.33508 * 354.91949 * 11 9 8 29 29 C 1.53001 * 117.49683 * 214.33130 * 2 1 3 30 30 C 1.52999 * 117.49880 * 145.66976 * 2 1 3 31 31 H 1.09005 * 109.46857 * 54.46714 * 1 2 3 32 32 H 1.08992 * 109.47193 * 294.46866 * 1 2 3 33 33 H 1.08994 * 109.46949 * 174.46400 * 1 2 3 34 34 H 1.08002 * 119.92496 * 359.97438 * 4 3 2 35 35 H 1.07995 * 119.85617 * 179.97438 * 5 4 3 36 36 H 1.08002 * 119.92043 * 179.97438 * 6 5 4 37 37 H 1.08000 * 120.07116 * 180.02562 * 7 6 5 38 38 H 1.08996 * 109.77665 * 300.16367 * 12 11 9 39 39 H 1.09003 * 109.77498 * 60.92390 * 12 11 9 40 40 H 1.08997 * 109.75979 * 247.20033 * 15 13 12 41 41 H 1.08999 * 109.75739 * 7.91758 * 15 13 12 42 42 H 0.96993 * 120.00058 * 179.97438 * 20 19 17 43 43 H 1.09003 * 110.00842 * 222.33774 * 25 16 15 44 44 H 1.09000 * 110.01005 * 100.97461 * 25 16 15 45 45 H 1.08999 * 110.02885 * 280.77377 * 28 11 9 46 46 H 1.09002 * 110.03347 * 42.19346 * 28 11 9 47 47 H 1.08996 * 117.49982 * 0.02562 * 29 2 1 48 48 H 1.08999 * 117.49707 * 145.02600 * 29 2 1 49 49 H 1.09000 * 117.50030 * 214.98095 * 30 2 1 50 50 H 1.09005 * 117.49489 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1800 1.3597 0.0000 4 6 2.9237 1.7705 -1.0871 5 6 3.5213 3.0181 -1.0885 6 6 3.3774 3.8622 -0.0014 7 6 2.6358 3.4641 1.0913 8 6 2.0263 2.2082 1.0973 9 6 1.2256 1.7770 2.2629 10 8 1.3923 0.6713 2.7393 11 7 0.3105 2.6100 2.7971 12 6 -0.6131 2.2705 3.8846 13 6 -1.4848 3.5046 4.1682 14 1 -2.5256 3.2457 4.3624 15 6 -0.8484 4.3284 5.2989 16 7 -0.7189 5.7129 4.8335 17 6 -0.1802 6.7440 5.5559 18 1 -0.1277 7.7340 5.1274 19 6 0.2983 6.5168 6.8390 20 7 0.2348 5.3103 7.3611 21 14 1.0339 7.9233 7.8241 22 1 0.9891 9.1692 7.0174 23 1 0.2532 8.1143 9.0728 24 1 2.4435 7.6044 8.1655 25 6 -1.2575 5.8207 3.4728 26 6 -1.3122 4.3915 2.9037 27 1 -2.1071 4.2550 2.1705 28 6 0.0865 4.0011 2.3860 29 6 2.2365 -1.1207 -0.7654 30 6 2.2365 -1.1207 0.7654 31 1 -0.3633 0.5973 -0.8363 32 1 -0.3633 0.4256 0.9353 33 1 -0.3633 -1.0228 -0.0991 34 1 3.0401 1.1163 -1.9385 35 1 4.1028 3.3348 -1.9417 36 1 3.8470 4.8348 -0.0086 37 1 2.5239 4.1240 1.9389 38 1 -1.2445 1.4342 3.5847 39 1 -0.0486 2.0046 4.7784 40 1 -1.4853 4.2947 6.1828 41 1 0.1360 3.9266 5.5385 42 1 0.5695 5.1515 8.2575 43 1 -0.6029 6.4411 2.8606 44 1 -2.2592 6.2495 3.5010 45 1 0.8448 4.6476 2.8276 46 1 0.1161 4.0787 1.2992 47 1 1.6112 -1.8578 -1.2693 48 1 3.1716 -0.8748 -1.2685 49 1 3.1716 -0.8747 1.2686 50 1 1.6112 -1.8578 1.2693 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049052616.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:55 Heat of formation + Delta-G solvation = 35.801337 kcal Electronic energy + Delta-G solvation = -30757.546834 eV Core-core repulsion = 26943.445958 eV Total energy + Delta-G solvation = -3814.100876 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.90824 -40.65652 -39.07450 -38.09615 -36.53582 -34.14853 -32.76070 -31.66308 -31.31737 -31.10767 -29.41976 -27.49288 -27.05090 -25.47727 -24.11563 -23.88099 -22.87899 -21.81308 -21.20964 -20.70237 -19.99164 -18.92668 -18.27882 -17.69779 -17.12761 -16.78756 -16.56872 -16.15342 -15.85805 -15.54525 -15.42917 -15.21870 -14.94259 -14.69838 -14.33196 -14.26709 -14.02122 -13.65316 -13.53856 -13.46089 -13.29248 -13.21965 -13.18308 -13.04717 -12.76541 -12.68688 -12.40857 -12.32328 -11.98124 -11.94351 -11.88873 -11.86882 -11.55163 -11.38157 -11.32658 -10.97457 -10.72800 -10.59612 -9.91722 -9.68593 -9.60215 -8.87376 -7.85182 -5.20176 0.00779 0.37382 1.45097 1.45369 1.55813 1.71738 1.98887 2.48992 2.72545 2.89642 3.26888 3.33719 3.51804 3.57653 3.69266 3.84775 3.87630 3.91250 3.99323 4.05486 4.14639 4.20664 4.24849 4.29306 4.46459 4.49687 4.52115 4.55090 4.69405 4.76178 4.78767 4.82605 4.83912 4.87820 4.90284 4.94187 5.03524 5.06701 5.07682 5.12935 5.24565 5.25524 5.28503 5.37938 5.43372 5.48859 5.50986 5.54531 5.63337 5.76990 5.96038 6.21032 6.48772 7.09622 7.11176 7.80520 8.41789 9.24941 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015947 B = 0.003281 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.389189 B = 8531.197929 C = 9124.037637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.106 4.106 3 C -0.012 4.012 4 C -0.120 4.120 5 C -0.089 4.089 6 C -0.126 4.126 7 C -0.101 4.101 8 C -0.136 4.136 9 C 0.569 3.431 10 O -0.561 6.561 11 N -0.606 5.606 12 C 0.128 3.872 13 C -0.111 4.111 14 H 0.116 0.884 15 C 0.199 3.801 16 N -0.623 5.623 17 C -0.235 4.235 18 H 0.087 0.913 19 C -0.068 4.068 20 N -0.952 5.952 21 Si 0.975 3.025 22 H -0.261 1.261 23 H -0.294 1.294 24 H -0.297 1.297 25 C 0.140 3.860 26 C -0.094 4.094 27 H 0.134 0.866 28 C 0.121 3.879 29 C -0.148 4.148 30 C -0.153 4.153 31 H 0.069 0.931 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.155 0.845 35 H 0.162 0.838 36 H 0.149 0.851 37 H 0.115 0.885 38 H 0.078 0.922 39 H 0.039 0.961 40 H 0.004 0.996 41 H 0.006 0.994 42 H 0.243 0.757 43 H 0.048 0.952 44 H 0.032 0.968 45 H 0.051 0.949 46 H 0.093 0.907 47 H 0.114 0.886 48 H 0.109 0.891 49 H 0.072 0.928 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.871 -7.674 -23.049 24.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.106 4.106 3 C -0.013 4.013 4 C -0.138 4.138 5 C -0.107 4.107 6 C -0.144 4.144 7 C -0.120 4.120 8 C -0.139 4.139 9 C 0.360 3.640 10 O -0.441 6.441 11 N -0.338 5.338 12 C 0.005 3.995 13 C -0.131 4.131 14 H 0.134 0.866 15 C 0.074 3.926 16 N -0.349 5.349 17 C -0.364 4.364 18 H 0.105 0.895 19 C -0.261 4.261 20 N -0.601 5.601 21 Si 0.804 3.196 22 H -0.185 1.185 23 H -0.222 1.222 24 H -0.225 1.225 25 C 0.015 3.985 26 C -0.113 4.113 27 H 0.151 0.849 28 C -0.002 4.002 29 C -0.184 4.184 30 C -0.190 4.190 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.172 0.828 35 H 0.180 0.820 36 H 0.167 0.833 37 H 0.133 0.867 38 H 0.096 0.904 39 H 0.057 0.943 40 H 0.022 0.978 41 H 0.024 0.976 42 H 0.053 0.947 43 H 0.067 0.933 44 H 0.050 0.950 45 H 0.069 0.931 46 H 0.111 0.889 47 H 0.132 0.868 48 H 0.128 0.872 49 H 0.091 0.909 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.087 -8.251 -22.637 24.184 hybrid contribution 0.459 0.721 2.004 2.178 sum 2.546 -7.531 -20.633 22.111 Atomic orbital electron populations 1.21234 0.91345 1.02479 1.01031 1.20106 0.94751 0.87887 1.07817 1.19229 0.96135 0.93250 0.92681 1.21289 0.97198 0.97445 0.97821 1.21703 0.97401 0.92927 0.98625 1.21396 0.98659 1.01354 0.92986 1.21437 0.97136 0.94023 0.99361 1.19651 1.02841 0.96502 0.94932 1.18363 0.78873 0.83545 0.83252 1.90735 1.67973 1.22068 1.63335 1.48262 1.35922 1.13648 1.35997 1.21655 0.91077 0.97548 0.89226 1.23001 0.99834 0.94004 0.96250 0.86646 1.20735 0.96025 0.83558 0.92266 1.44511 1.71213 1.05845 1.13325 1.19488 1.31327 0.89711 0.95902 0.89504 1.25629 1.02648 0.99036 0.98743 1.70213 1.53060 1.21072 1.15790 0.85056 0.77004 0.79116 0.78467 1.18503 1.22172 1.22485 1.21384 0.97067 0.94810 0.85281 1.23006 0.96883 0.94815 0.96594 0.84851 1.22141 0.96911 0.80931 1.00182 1.23287 1.02453 0.99166 0.93522 1.22733 1.01418 1.00124 0.94728 0.91239 0.94660 0.91120 0.82781 0.82027 0.83280 0.86721 0.90422 0.94264 0.97751 0.97576 0.94738 0.93349 0.94990 0.93080 0.88866 0.86814 0.87249 0.90937 0.89600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.35 9.45 71.98 0.68 -1.67 16 2 C -0.11 -2.45 1.31 -52.93 -0.07 -2.52 16 3 C -0.01 -0.29 5.15 -19.61 -0.10 -0.40 16 4 C -0.12 -2.12 9.22 22.23 0.20 -1.92 16 5 C -0.09 -1.37 10.04 22.33 0.22 -1.15 16 6 C -0.13 -2.43 10.03 22.23 0.22 -2.21 16 7 C -0.10 -2.66 8.20 22.52 0.18 -2.48 16 8 C -0.14 -3.99 5.22 -20.09 -0.10 -4.10 16 9 C 0.57 20.16 5.45 86.78 0.47 20.63 16 10 O -0.56 -22.88 14.51 -3.85 -0.06 -22.93 16 11 N -0.61 -20.85 3.31 -820.41 -2.72 -23.57 16 12 C 0.13 4.57 6.24 86.59 0.54 5.11 16 13 C -0.11 -3.94 4.02 -9.49 -0.04 -3.98 16 14 H 0.12 3.54 8.14 -2.39 -0.02 3.52 16 15 C 0.20 9.77 4.75 86.59 0.41 10.18 16 16 N -0.62 -30.80 3.37 -697.88 -2.35 -33.15 16 17 C -0.24 -12.88 10.25 84.03 0.86 -12.02 16 18 H 0.09 4.49 7.83 -2.91 -0.02 4.47 16 19 C -0.07 -3.86 5.48 84.86 0.47 -3.40 16 20 N -0.95 -58.19 10.25 21.65 0.22 -57.97 16 21 Si 0.97 45.99 29.55 68.60 2.03 48.01 16 22 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 23 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 24 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 25 C 0.14 5.15 6.37 86.65 0.55 5.70 16 26 C -0.09 -2.81 4.19 -9.26 -0.04 -2.85 16 27 H 0.13 2.98 8.14 -2.39 -0.02 2.96 16 28 C 0.12 3.72 4.65 86.72 0.40 4.12 16 29 C -0.15 -2.53 9.41 30.62 0.29 -2.24 16 30 C -0.15 -3.83 8.31 30.62 0.25 -3.57 16 31 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.03 0.98 6.32 -2.39 -0.02 0.96 16 33 H 0.07 1.38 8.09 -2.39 -0.02 1.36 16 34 H 0.15 1.85 7.02 -2.91 -0.02 1.82 16 35 H 0.16 1.34 8.06 -2.91 -0.02 1.31 16 36 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 37 H 0.11 3.36 6.34 -2.91 -0.02 3.34 16 38 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.04 1.66 7.44 -2.39 -0.02 1.64 16 40 H 0.00 0.24 7.46 -2.39 -0.02 0.22 16 41 H 0.01 0.35 6.50 -2.39 -0.02 0.33 16 42 H 0.24 14.62 8.31 -92.71 -0.77 13.85 16 43 H 0.05 1.69 7.95 -2.39 -0.02 1.67 16 44 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.05 1.86 6.66 -2.39 -0.02 1.85 16 46 H 0.09 2.37 7.27 -2.39 -0.02 2.35 16 47 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.11 1.52 7.14 -2.39 -0.02 1.50 16 49 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 50 H 0.09 2.23 8.14 -2.38 -0.02 2.22 16 Total: -1.00 -73.26 385.64 3.47 -69.79 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.93 Total: 18.56 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 5.41 Total: 1.25 kcal Atomic # 7 Polarization: -109.84 SS G_CDS: -4.85 Total: -114.68 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.06 Total: -22.93 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -73.26 3.47 -69.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049052616.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.592 kcal (2) G-P(sol) polarization free energy of solvation -73.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds