Wall clock time and date at job start Sat Apr 11 2020 06:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50695 * 110.27358 * 2 1 4 4 O 1.21288 * 119.99764 * 350.31404 * 3 2 1 5 5 N 1.34776 * 120.00737 * 170.31045 * 3 2 1 6 6 C 1.46663 * 125.34227 * 184.71136 * 5 3 2 7 7 C 1.53722 * 107.94269 * 180.54445 * 6 5 3 8 8 H 1.09005 * 112.56456 * 139.71723 * 7 6 5 9 9 C 1.53684 * 109.34264 * 266.25149 * 7 6 5 10 10 N 1.46639 * 108.01152 * 127.55688 * 9 7 6 11 11 C 1.36942 * 125.33190 * 180.81753 * 10 9 7 12 12 H 1.07990 * 120.00167 * 180.02562 * 11 10 9 13 13 C 1.38816 * 119.99675 * 0.02562 * 11 10 9 14 14 N 1.31620 * 120.00051 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99810 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47038 * 59.99694 * 15 13 11 17 17 H 1.48500 * 109.46942 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46861 * 299.99540 * 15 13 11 19 19 C 1.46746 * 109.34208 * 0.83488 * 10 9 7 20 20 C 1.53923 * 106.71811 * 341.66335 * 19 10 9 21 21 H 1.08999 * 113.01522 * 150.83291 * 20 19 10 22 22 C 1.46779 * 125.33219 * 4.40358 * 5 3 2 23 23 C 1.54347 * 110.30376 * 237.92150 * 2 1 3 24 24 C 1.54350 * 102.39338 * 267.42375 * 23 2 1 25 25 C 1.51361 * 105.16950 * 333.65589 * 24 23 2 26 26 C 1.38502 * 130.38836 * 197.16218 * 25 24 23 27 27 C 1.38106 * 120.21307 * 180.02562 * 26 25 24 28 28 C 1.38250 * 119.93742 * 0.29809 * 27 26 25 29 29 C 1.38110 * 119.93187 * 359.44718 * 28 27 26 30 30 C 1.38212 * 109.76377 * 17.18518 * 25 24 23 31 31 H 1.09000 * 109.47391 * 182.07127 * 1 2 3 32 32 H 1.08993 * 109.47601 * 302.07999 * 1 2 3 33 33 H 1.09006 * 109.47158 * 62.07577 * 1 2 3 34 34 H 1.09001 * 109.77058 * 300.16163 * 6 5 3 35 35 H 1.08998 * 109.77557 * 60.90347 * 6 5 3 36 36 H 1.09002 * 109.76413 * 247.20183 * 9 7 6 37 37 H 1.09006 * 109.76200 * 7.91569 * 9 7 6 38 38 H 0.96998 * 119.99543 * 179.97438 * 14 13 11 39 39 H 1.08992 * 110.01301 * 222.34156 * 19 10 9 40 40 H 1.09001 * 110.00491 * 100.97543 * 19 10 9 41 41 H 1.08998 * 110.02981 * 280.77403 * 22 5 3 42 42 H 1.09002 * 110.02529 * 42.19344 * 22 5 3 43 43 H 1.09006 * 110.81957 * 149.20098 * 23 2 1 44 44 H 1.08997 * 110.82019 * 25.65351 * 23 2 1 45 45 H 1.09000 * 110.30239 * 214.72610 * 24 23 2 46 46 H 1.09003 * 110.29607 * 92.57824 * 24 23 2 47 47 H 1.07998 * 119.89526 * 0.02605 * 26 25 24 48 48 H 1.08001 * 120.02875 * 180.02562 * 27 26 25 49 49 H 1.07997 * 120.03584 * 179.70532 * 28 27 26 50 50 H 1.07994 * 119.88991 * 180.28078 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0521 1.4136 0.0000 4 8 1.2909 2.3412 -0.1767 5 7 3.3649 1.6472 0.1964 6 6 3.9821 2.9722 0.3166 7 6 5.4931 2.7742 0.5180 8 1 6.0877 3.4990 -0.0383 9 6 5.8092 2.7640 2.0219 10 7 6.5800 1.5515 2.3151 11 6 7.0334 1.1812 3.5531 12 1 7.5956 0.2668 3.6710 13 6 6.7703 1.9815 4.6564 14 7 6.0855 3.0962 4.5126 15 14 7.3893 1.4768 6.3451 16 1 8.8707 1.3766 6.3196 17 1 6.9785 2.4931 7.3469 18 1 6.8102 0.1592 6.7112 19 6 6.7898 0.7971 1.0740 20 6 5.7496 1.3107 0.0624 21 1 6.0868 1.2346 -0.9714 22 6 4.4000 0.6152 0.3300 23 6 2.0655 -0.7688 -1.2266 24 6 2.2440 -2.1974 -0.6701 25 6 2.4654 -2.0186 0.8166 26 6 2.9844 -2.8918 1.7580 27 6 3.0930 -2.5049 3.0794 28 6 2.6769 -1.2443 3.4656 29 6 2.1641 -0.3703 2.5273 30 6 2.0552 -0.7561 1.2016 31 1 -0.3634 -1.0270 0.0371 32 1 -0.3634 0.5457 0.8707 33 1 -0.3634 0.4813 -0.9081 34 1 3.8034 3.5460 -0.5928 35 1 3.5615 3.4987 1.1733 36 1 6.3958 3.6454 2.2813 37 1 4.8811 2.7579 2.5936 38 1 5.9013 3.6552 5.2837 39 1 6.6405 -0.2673 1.2547 40 1 7.7967 0.9739 0.6958 41 1 4.3846 0.1992 1.3374 42 1 4.2364 -0.1747 -0.4031 43 1 3.0208 -0.3584 -1.5542 44 1 1.3387 -0.7573 -2.0387 45 1 3.1105 -2.6756 -1.1268 46 1 1.3460 -2.7883 -0.8504 47 1 3.3051 -3.8784 1.4580 48 1 3.4985 -3.1881 3.8110 49 1 2.7567 -0.9419 4.4993 50 1 1.8435 0.6158 2.8290 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049242587.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:15 Heat of formation + Delta-G solvation = 26.189033 kcal Electronic energy + Delta-G solvation = -32054.939292 eV Core-core repulsion = 28240.421595 eV Total energy + Delta-G solvation = -3814.517697 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.22179 -39.35207 -38.10994 -35.85400 -34.88230 -32.27260 -31.90929 -30.27965 -29.62952 -29.38411 -28.69322 -26.12803 -25.43066 -24.78972 -23.14492 -22.59385 -21.02506 -20.91627 -20.05997 -19.27513 -18.71113 -17.15439 -16.70098 -16.11390 -15.67664 -15.53065 -14.94999 -14.83977 -14.65344 -14.21846 -14.08339 -13.73018 -13.51383 -13.21149 -12.98679 -12.86560 -12.58848 -12.54733 -12.27427 -12.10207 -12.05356 -11.95288 -11.68025 -11.45758 -11.43688 -11.30328 -10.99557 -10.90178 -10.83996 -10.74692 -10.61279 -10.37276 -10.11627 -10.06511 -9.81340 -9.62462 -9.50639 -8.62885 -8.59367 -8.37299 -8.21233 -6.82830 -5.72048 -3.05360 1.47801 1.56277 2.83216 3.30362 3.38398 3.43242 3.44560 3.89345 4.30313 4.45741 4.48683 4.61908 4.82114 4.94479 4.99928 5.06462 5.17614 5.24131 5.29452 5.32662 5.39091 5.51299 5.56587 5.58653 5.64406 5.67831 5.71688 5.72546 5.76861 5.84731 5.91730 5.95148 6.00127 6.04972 6.11524 6.19594 6.22723 6.27510 6.33348 6.45882 6.57981 6.60774 6.61197 6.67402 6.73993 6.76101 6.84533 7.14279 7.56046 7.58656 7.81218 7.86555 8.26470 8.42721 9.22014 9.82667 10.46716 11.39279 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011815 B = 0.005011 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.213474 B = 5585.825750 C = 6598.417322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.035 4.035 3 C 0.537 3.463 4 O -0.549 6.549 5 N -0.599 5.599 6 C 0.120 3.880 7 C -0.123 4.123 8 H 0.089 0.911 9 C 0.187 3.813 10 N -0.599 5.599 11 C -0.227 4.227 12 H 0.076 0.924 13 C -0.005 4.005 14 N -0.921 5.921 15 Si 0.909 3.091 16 H -0.285 1.285 17 H -0.291 1.291 18 H -0.286 1.286 19 C 0.147 3.853 20 C -0.114 4.114 21 H 0.087 0.913 22 C 0.110 3.890 23 C -0.113 4.113 24 C -0.077 4.077 25 C -0.097 4.097 26 C -0.109 4.109 27 C -0.112 4.112 28 C -0.105 4.105 29 C -0.087 4.087 30 C -0.085 4.085 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.043 0.957 37 H 0.051 0.949 38 H 0.252 0.748 39 H 0.036 0.964 40 H 0.018 0.982 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.117 0.883 48 H 0.122 0.878 49 H 0.125 0.875 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.708 -10.575 -10.924 17.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.038 4.038 3 C 0.325 3.675 4 O -0.427 6.427 5 N -0.331 5.331 6 C -0.002 4.002 7 C -0.143 4.143 8 H 0.107 0.893 9 C 0.062 3.938 10 N -0.325 5.325 11 C -0.355 4.355 12 H 0.094 0.906 13 C -0.201 4.201 14 N -0.568 5.568 15 Si 0.739 3.261 16 H -0.212 1.212 17 H -0.216 1.216 18 H -0.212 1.212 19 C 0.020 3.980 20 C -0.134 4.134 21 H 0.105 0.895 22 C -0.012 4.012 23 C -0.150 4.150 24 C -0.114 4.114 25 C -0.097 4.097 26 C -0.127 4.127 27 C -0.130 4.130 28 C -0.123 4.123 29 C -0.105 4.105 30 C -0.085 4.085 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.036 0.964 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.135 0.865 48 H 0.140 0.860 49 H 0.143 0.857 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.202 -9.990 -10.795 16.841 hybrid contribution 0.530 -0.102 1.145 1.266 sum -7.673 -10.092 -9.650 15.932 Atomic orbital electron populations 1.21567 0.90995 1.01680 1.03250 1.20284 0.97524 0.91788 0.94169 1.19977 0.80591 0.90506 0.76391 1.90663 1.55950 1.45681 1.50425 1.48155 1.06340 1.08412 1.70187 1.21815 0.92938 0.84343 1.01109 1.23147 0.93668 0.96138 1.01333 0.89270 1.21087 0.96507 0.90003 0.86213 1.44158 1.63599 1.22296 1.02493 1.18947 1.28500 1.05120 0.82913 0.90593 1.24759 1.00462 0.97099 0.97813 1.69947 1.43944 1.13937 1.28979 0.86253 0.78425 0.77383 0.84023 1.21200 1.21645 1.21223 1.21133 0.94587 0.95320 0.86932 1.22974 0.95319 0.95852 0.99219 0.89486 1.22353 0.86011 0.90352 1.02521 1.22514 1.02037 0.94499 0.95989 1.21011 1.02265 0.96904 0.91226 1.20417 0.99473 0.94379 0.95411 1.20512 1.00511 0.99094 0.92573 1.21034 0.99576 0.96604 0.95765 1.21053 0.97947 0.93575 0.99716 1.20601 0.98782 0.99431 0.91679 1.20066 1.00110 0.95021 0.93341 0.91945 0.91908 0.91478 0.92426 0.91078 0.93868 0.93120 0.93724 0.94590 0.96407 0.89762 0.91528 0.90045 0.89783 0.90390 0.90113 0.86455 0.85980 0.85742 0.86665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 7.80 37.16 0.29 -1.17 16 2 C -0.03 -0.47 0.66 -155.78 -0.10 -0.58 16 3 C 0.54 9.20 6.41 -10.99 -0.07 9.13 16 4 O -0.55 -10.97 16.41 5.55 0.09 -10.88 16 5 N -0.60 -10.25 3.28 -172.17 -0.56 -10.82 16 6 C 0.12 2.14 6.24 -3.58 -0.02 2.12 16 7 C -0.12 -2.24 4.02 -88.61 -0.36 -2.59 16 8 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 9 C 0.19 4.38 4.75 -3.61 -0.02 4.36 16 10 N -0.60 -14.61 3.37 -171.94 -0.58 -15.19 16 11 C -0.23 -6.10 10.25 -15.06 -0.15 -6.26 16 12 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 13 C 0.00 -0.14 5.48 -17.43 -0.10 -0.23 16 14 N -0.92 -26.50 10.25 55.49 0.57 -25.93 16 15 Si 0.91 21.76 29.55 -169.99 -5.02 16.73 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 C 0.15 2.89 6.37 -3.43 -0.02 2.87 16 20 C -0.11 -1.89 4.19 -88.25 -0.37 -2.26 16 21 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 22 C 0.11 1.79 4.37 -3.28 -0.01 1.78 16 23 C -0.11 -1.22 5.36 -25.32 -0.14 -1.36 16 24 C -0.08 -0.75 6.74 -26.85 -0.18 -0.93 16 25 C -0.10 -1.20 5.81 -104.21 -0.61 -1.81 16 26 C -0.11 -1.34 10.04 -39.53 -0.40 -1.73 16 27 C -0.11 -1.50 10.05 -39.63 -0.40 -1.90 16 28 C -0.10 -1.60 10.05 -39.62 -0.40 -2.00 16 29 C -0.09 -1.39 8.84 -39.53 -0.35 -1.74 16 30 C -0.09 -1.21 2.70 -104.20 -0.28 -1.50 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.40 7.44 -51.93 -0.39 1.02 16 36 H 0.04 1.14 7.45 -51.93 -0.39 0.75 16 37 H 0.05 1.35 6.51 -51.93 -0.34 1.01 16 38 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.04 0.70 7.94 -51.93 -0.41 0.28 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 1.63 6.14 -51.93 -0.32 1.31 16 42 H 0.07 0.94 4.92 -51.93 -0.26 0.69 16 43 H 0.08 0.92 5.73 -51.93 -0.30 0.62 16 44 H 0.08 0.77 7.90 -51.93 -0.41 0.36 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 48 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 49 H 0.12 1.86 8.06 -52.49 -0.42 1.43 16 50 H 0.12 2.00 8.06 -52.49 -0.42 1.57 16 LS Contribution 379.89 15.07 5.72 5.72 Total: -1.00 -31.20 379.89 -11.31 -42.51 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -7.84 Total: 3.63 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -3.68 Total: -5.78 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.57 Total: -51.94 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.20 -11.31 -42.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049242587.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.700 kcal (2) G-P(sol) polarization free energy of solvation -31.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds