Wall clock time and date at job start Sat Apr 11 2020 06:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50695 * 110.27358 * 2 1 4 4 O 1.21288 * 119.99764 * 350.31404 * 3 2 1 5 5 N 1.34776 * 120.00737 * 170.31045 * 3 2 1 6 6 C 1.46663 * 125.34227 * 184.71136 * 5 3 2 7 7 C 1.53722 * 107.94269 * 180.54445 * 6 5 3 8 8 H 1.09005 * 112.56456 * 139.71723 * 7 6 5 9 9 C 1.53684 * 109.34264 * 266.25149 * 7 6 5 10 10 N 1.46639 * 108.01152 * 127.55688 * 9 7 6 11 11 C 1.36942 * 125.33190 * 180.81753 * 10 9 7 12 12 H 1.07990 * 120.00167 * 180.02562 * 11 10 9 13 13 C 1.38816 * 119.99675 * 0.02562 * 11 10 9 14 14 N 1.31620 * 120.00051 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99810 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47038 * 59.99694 * 15 13 11 17 17 H 1.48500 * 109.46942 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46861 * 299.99540 * 15 13 11 19 19 C 1.46746 * 109.34208 * 0.83488 * 10 9 7 20 20 C 1.53923 * 106.71811 * 341.66335 * 19 10 9 21 21 H 1.08999 * 113.01522 * 150.83291 * 20 19 10 22 22 C 1.46779 * 125.33219 * 4.40358 * 5 3 2 23 23 C 1.54347 * 110.30376 * 237.92150 * 2 1 3 24 24 C 1.54350 * 102.39338 * 267.42375 * 23 2 1 25 25 C 1.51361 * 105.16950 * 333.65589 * 24 23 2 26 26 C 1.38502 * 130.38836 * 197.16218 * 25 24 23 27 27 C 1.38106 * 120.21307 * 180.02562 * 26 25 24 28 28 C 1.38250 * 119.93742 * 0.29809 * 27 26 25 29 29 C 1.38110 * 119.93187 * 359.44718 * 28 27 26 30 30 C 1.38212 * 109.76377 * 17.18518 * 25 24 23 31 31 H 1.09000 * 109.47391 * 182.07127 * 1 2 3 32 32 H 1.08993 * 109.47601 * 302.07999 * 1 2 3 33 33 H 1.09006 * 109.47158 * 62.07577 * 1 2 3 34 34 H 1.09001 * 109.77058 * 300.16163 * 6 5 3 35 35 H 1.08998 * 109.77557 * 60.90347 * 6 5 3 36 36 H 1.09002 * 109.76413 * 247.20183 * 9 7 6 37 37 H 1.09006 * 109.76200 * 7.91569 * 9 7 6 38 38 H 0.96998 * 119.99543 * 179.97438 * 14 13 11 39 39 H 1.08992 * 110.01301 * 222.34156 * 19 10 9 40 40 H 1.09001 * 110.00491 * 100.97543 * 19 10 9 41 41 H 1.08998 * 110.02981 * 280.77403 * 22 5 3 42 42 H 1.09002 * 110.02529 * 42.19344 * 22 5 3 43 43 H 1.09006 * 110.81957 * 149.20098 * 23 2 1 44 44 H 1.08997 * 110.82019 * 25.65351 * 23 2 1 45 45 H 1.09000 * 110.30239 * 214.72610 * 24 23 2 46 46 H 1.09003 * 110.29607 * 92.57824 * 24 23 2 47 47 H 1.07998 * 119.89526 * 0.02605 * 26 25 24 48 48 H 1.08001 * 120.02875 * 180.02562 * 27 26 25 49 49 H 1.07997 * 120.03584 * 179.70532 * 28 27 26 50 50 H 1.07994 * 119.88991 * 180.28078 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0521 1.4136 0.0000 4 8 1.2909 2.3412 -0.1767 5 7 3.3649 1.6472 0.1964 6 6 3.9821 2.9722 0.3166 7 6 5.4931 2.7742 0.5180 8 1 6.0877 3.4990 -0.0383 9 6 5.8092 2.7640 2.0219 10 7 6.5800 1.5515 2.3151 11 6 7.0334 1.1812 3.5531 12 1 7.5956 0.2668 3.6710 13 6 6.7703 1.9815 4.6564 14 7 6.0855 3.0962 4.5126 15 14 7.3893 1.4768 6.3451 16 1 8.8707 1.3766 6.3196 17 1 6.9785 2.4931 7.3469 18 1 6.8102 0.1592 6.7112 19 6 6.7898 0.7971 1.0740 20 6 5.7496 1.3107 0.0624 21 1 6.0868 1.2346 -0.9714 22 6 4.4000 0.6152 0.3300 23 6 2.0655 -0.7688 -1.2266 24 6 2.2440 -2.1974 -0.6701 25 6 2.4654 -2.0186 0.8166 26 6 2.9844 -2.8918 1.7580 27 6 3.0930 -2.5049 3.0794 28 6 2.6769 -1.2443 3.4656 29 6 2.1641 -0.3703 2.5273 30 6 2.0552 -0.7561 1.2016 31 1 -0.3634 -1.0270 0.0371 32 1 -0.3634 0.5457 0.8707 33 1 -0.3634 0.4813 -0.9081 34 1 3.8034 3.5460 -0.5928 35 1 3.5615 3.4987 1.1733 36 1 6.3958 3.6454 2.2813 37 1 4.8811 2.7579 2.5936 38 1 5.9013 3.6552 5.2837 39 1 6.6405 -0.2673 1.2547 40 1 7.7967 0.9739 0.6958 41 1 4.3846 0.1992 1.3374 42 1 4.2364 -0.1747 -0.4031 43 1 3.0208 -0.3584 -1.5542 44 1 1.3387 -0.7573 -2.0387 45 1 3.1105 -2.6756 -1.1268 46 1 1.3460 -2.7883 -0.8504 47 1 3.3051 -3.8784 1.4580 48 1 3.4985 -3.1881 3.8110 49 1 2.7567 -0.9419 4.4993 50 1 1.8435 0.6158 2.8290 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049242587.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:14 Heat of formation + Delta-G solvation = 9.317803 kcal Electronic energy + Delta-G solvation = -32055.670884 eV Core-core repulsion = 28240.421595 eV Total energy + Delta-G solvation = -3815.249289 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.40654 -40.69542 -39.52146 -36.92305 -36.58094 -34.09552 -32.99016 -31.84923 -31.10610 -30.67962 -29.64635 -27.72845 -27.04560 -26.12941 -24.61211 -23.62871 -22.36136 -21.88327 -21.73275 -20.79302 -19.98675 -18.85064 -18.21079 -17.55438 -16.78146 -16.71754 -16.56767 -16.17627 -15.83793 -15.69895 -15.54931 -15.15279 -14.84861 -14.57304 -14.38412 -14.04305 -13.88588 -13.78480 -13.56070 -13.49324 -13.25722 -13.24702 -13.10726 -12.90869 -12.73938 -12.68018 -12.61168 -12.44658 -12.04527 -12.02846 -11.88680 -11.86032 -11.74778 -11.64754 -11.49761 -11.31427 -10.85819 -10.66087 -9.73249 -9.62128 -9.41861 -8.85452 -7.83686 -5.17847 0.40638 0.47939 1.43194 1.45792 1.50010 1.51968 1.99520 2.49202 2.81606 3.21979 3.34891 3.39667 3.49147 3.55807 3.66598 3.82475 3.94638 4.00064 4.08310 4.13368 4.16737 4.23905 4.30518 4.32932 4.48853 4.51332 4.59319 4.60825 4.67180 4.72244 4.75298 4.81387 4.87941 4.92874 4.94624 5.02447 5.06933 5.08940 5.11223 5.18623 5.20256 5.27391 5.31987 5.40176 5.48658 5.55106 5.62931 5.64795 5.67617 5.77060 6.09787 6.21761 6.50998 7.06495 7.12201 7.82095 8.43631 9.26221 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011815 B = 0.005011 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.213474 B = 5585.825750 C = 6598.417322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.034 4.034 3 C 0.530 3.470 4 O -0.586 6.586 5 N -0.601 5.601 6 C 0.123 3.877 7 C -0.112 4.112 8 H 0.115 0.885 9 C 0.202 3.798 10 N -0.618 5.618 11 C -0.231 4.231 12 H 0.084 0.916 13 C -0.065 4.065 14 N -0.952 5.952 15 Si 0.970 3.030 16 H -0.275 1.275 17 H -0.300 1.300 18 H -0.277 1.277 19 C 0.142 3.858 20 C -0.097 4.097 21 H 0.136 0.864 22 C 0.118 3.882 23 C -0.108 4.108 24 C -0.069 4.069 25 C -0.089 4.089 26 C -0.103 4.103 27 C -0.115 4.115 28 C -0.131 4.131 29 C -0.112 4.112 30 C -0.095 4.095 31 H 0.088 0.912 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.035 0.965 36 H 0.003 0.997 37 H 0.004 0.996 38 H 0.242 0.758 39 H 0.044 0.956 40 H 0.031 0.969 41 H 0.050 0.950 42 H 0.101 0.899 43 H 0.081 0.919 44 H 0.108 0.892 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.154 0.846 48 H 0.141 0.859 49 H 0.109 0.891 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.877 -14.367 -14.442 21.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.037 4.037 3 C 0.320 3.680 4 O -0.467 6.467 5 N -0.332 5.332 6 C 0.000 4.000 7 C -0.132 4.132 8 H 0.133 0.867 9 C 0.076 3.924 10 N -0.344 5.344 11 C -0.360 4.360 12 H 0.102 0.898 13 C -0.257 4.257 14 N -0.601 5.601 15 Si 0.799 3.201 16 H -0.201 1.201 17 H -0.227 1.227 18 H -0.203 1.203 19 C 0.017 3.983 20 C -0.117 4.117 21 H 0.153 0.847 22 C -0.004 4.004 23 C -0.146 4.146 24 C -0.106 4.106 25 C -0.089 4.089 26 C -0.121 4.121 27 C -0.133 4.133 28 C -0.149 4.149 29 C -0.130 4.130 30 C -0.095 4.095 31 H 0.107 0.893 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.053 0.947 36 H 0.021 0.979 37 H 0.022 0.978 38 H 0.052 0.948 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.069 0.931 42 H 0.119 0.881 43 H 0.099 0.901 44 H 0.127 0.873 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.172 0.828 48 H 0.158 0.842 49 H 0.127 0.873 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.347 -13.826 -14.337 21.230 hybrid contribution 0.257 1.092 2.289 2.549 sum -7.089 -12.735 -12.048 18.910 Atomic orbital electron populations 1.21572 0.90362 1.02959 1.02288 1.20428 0.98065 0.89522 0.95712 1.20778 0.80109 0.91912 0.75181 1.90635 1.56672 1.47281 1.52120 1.48237 1.06846 1.08189 1.69901 1.21683 0.92618 0.85157 1.00505 1.22999 0.94089 0.98613 0.97480 0.86698 1.20700 0.93535 0.88543 0.89588 1.44422 1.63334 1.23107 1.03517 1.19345 1.27516 1.04934 0.84242 0.89832 1.25557 1.01383 0.97415 1.01375 1.70201 1.45703 1.15156 1.29086 0.85275 0.78266 0.76899 0.79705 1.20063 1.22688 1.20290 1.21347 0.96107 0.95221 0.85668 1.23066 0.94379 0.93497 1.00713 0.84668 1.22294 0.85696 0.90751 1.01681 1.22599 1.02509 0.94508 0.94948 1.21115 1.04695 0.96399 0.88367 1.20843 0.97626 0.92980 0.97416 1.20901 0.99116 1.00443 0.91618 1.21293 0.99056 0.95650 0.97326 1.21077 0.99675 0.95069 0.99119 1.20465 1.00808 0.98245 0.93527 1.20128 1.00604 0.96406 0.92371 0.89276 0.94566 0.90953 0.90367 0.94702 0.97895 0.97778 0.94838 0.93819 0.95094 0.93128 0.88091 0.90060 0.87313 0.87658 0.87509 0.82839 0.84163 0.87261 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.73 7.80 71.98 0.56 -2.17 16 2 C -0.03 -0.89 0.66 -53.00 -0.04 -0.92 16 3 C 0.53 18.25 6.41 87.66 0.56 18.81 16 4 O -0.59 -24.15 16.41 -3.05 -0.05 -24.20 16 5 N -0.60 -20.50 3.28 -817.01 -2.68 -23.17 16 6 C 0.12 4.49 6.24 86.59 0.54 5.03 16 7 C -0.11 -4.03 4.02 -9.49 -0.04 -4.07 16 8 H 0.11 3.58 8.14 -2.38 -0.02 3.56 16 9 C 0.20 9.98 4.75 86.58 0.41 10.39 16 10 N -0.62 -30.70 3.37 -697.90 -2.35 -33.05 16 11 C -0.23 -12.72 10.25 84.03 0.86 -11.86 16 12 H 0.08 4.36 7.83 -2.92 -0.02 4.34 16 13 C -0.06 -3.69 5.48 84.86 0.47 -3.22 16 14 N -0.95 -58.42 10.25 21.65 0.22 -58.20 16 15 Si 0.97 46.14 29.55 68.60 2.03 48.17 16 16 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 17 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 19 C 0.14 5.30 6.37 86.64 0.55 5.85 16 20 C -0.10 -2.94 4.19 -9.26 -0.04 -2.98 16 21 H 0.14 2.96 8.14 -2.39 -0.02 2.94 16 22 C 0.12 3.63 4.37 86.72 0.38 4.01 16 23 C -0.11 -1.84 5.36 31.51 0.17 -1.67 16 24 C -0.07 -0.93 6.74 30.52 0.21 -0.72 16 25 C -0.09 -1.89 5.81 -19.60 -0.11 -2.01 16 26 C -0.10 -2.16 10.04 22.30 0.22 -1.94 16 27 C -0.12 -2.97 10.05 22.24 0.22 -2.75 16 28 C -0.13 -4.28 10.05 22.24 0.22 -4.05 16 29 C -0.11 -3.88 8.84 22.30 0.20 -3.68 16 30 C -0.09 -2.64 2.70 -19.59 -0.05 -2.69 16 31 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.63 8.09 -2.38 -0.02 1.62 16 34 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.03 1.50 7.44 -2.39 -0.02 1.49 16 36 H 0.00 0.16 7.45 -2.39 -0.02 0.14 16 37 H 0.00 0.24 6.51 -2.38 -0.02 0.22 16 38 H 0.24 14.72 8.31 -92.71 -0.77 13.94 16 39 H 0.04 1.58 7.94 -2.39 -0.02 1.56 16 40 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.05 1.95 6.14 -2.39 -0.01 1.93 16 42 H 0.10 2.42 4.92 -2.39 -0.01 2.41 16 43 H 0.08 1.41 5.73 -2.38 -0.01 1.40 16 44 H 0.11 1.38 7.90 -2.39 -0.02 1.36 16 45 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 48 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 49 H 0.11 3.68 8.06 -2.91 -0.02 3.66 16 50 H 0.08 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -75.21 379.89 3.40 -71.82 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.93 Total: 19.28 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 5.30 Total: -0.64 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -4.81 Total: -114.43 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.05 Total: -24.20 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -75.21 3.40 -71.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049242587.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.135 kcal (2) G-P(sol) polarization free energy of solvation -75.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds