Wall clock time and date at job start Sat Apr 11 2020 06:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 110.26865 * 2 1 4 4 O 1.21278 * 120.00163 * 237.61732 * 3 2 1 5 5 N 1.34781 * 119.99879 * 57.61890 * 3 2 1 6 6 C 1.46654 * 125.33239 * 185.09099 * 5 3 2 7 7 C 1.53679 * 107.97016 * 180.70700 * 6 5 3 8 8 H 1.08999 * 112.77496 * 140.60841 * 7 6 5 9 9 C 1.53981 * 109.29991 * 266.93249 * 7 6 5 10 10 N 1.46756 * 106.67736 * 138.83035 * 9 7 6 11 11 C 1.36940 * 125.33339 * 161.57860 * 10 9 7 12 12 H 1.08000 * 119.99686 * 354.66468 * 11 10 9 13 13 C 1.38809 * 120.00189 * 174.65274 * 11 10 9 14 14 N 1.31629 * 119.99665 * 5.74283 * 13 11 10 15 15 Si 1.86801 * 120.00373 * 185.74119 * 13 11 10 16 16 H 1.48495 * 109.46930 * 94.99554 * 15 13 11 17 17 H 1.48497 * 109.46869 * 214.99985 * 15 13 11 18 18 H 1.48506 * 109.46591 * 334.99694 * 15 13 11 19 19 C 1.46654 * 109.33091 * 341.55296 * 10 9 7 20 20 C 1.53670 * 107.97382 * 0.70704 * 19 10 9 21 21 H 1.09000 * 112.77775 * 139.89133 * 20 19 10 22 22 C 1.46756 * 125.33135 * 4.78098 * 5 3 2 23 23 C 1.54347 * 110.30663 * 122.07480 * 2 1 3 24 24 C 1.54342 * 102.38834 * 92.57611 * 23 2 1 25 25 C 1.51364 * 105.17823 * 26.35123 * 24 23 2 26 26 C 1.38491 * 130.40050 * 162.80665 * 25 24 23 27 27 C 1.38104 * 120.21869 * 180.02562 * 26 25 24 28 28 C 1.38251 * 119.93443 * 359.97438 * 27 26 25 29 29 C 1.38101 * 119.93639 * 0.02562 * 28 27 26 30 30 C 1.38223 * 109.75299 * 342.81123 * 25 24 23 31 31 H 1.08996 * 109.47076 * 292.26538 * 1 2 3 32 32 H 1.08998 * 109.47156 * 52.26895 * 1 2 3 33 33 H 1.09003 * 109.46963 * 172.26608 * 1 2 3 34 34 H 1.08998 * 109.76758 * 300.33655 * 6 5 3 35 35 H 1.09002 * 109.76790 * 61.06680 * 6 5 3 36 36 H 1.08999 * 110.01641 * 258.13869 * 9 7 6 37 37 H 1.09003 * 110.01621 * 19.52663 * 9 7 6 38 38 H 0.97001 * 119.99855 * 179.97438 * 14 13 11 39 39 H 1.09005 * 109.76950 * 120.33734 * 19 10 9 40 40 H 1.09002 * 109.76321 * 241.05980 * 19 10 9 41 41 H 1.08995 * 110.01709 * 280.85460 * 22 5 3 42 42 H 1.08999 * 110.01847 * 42.25318 * 22 5 3 43 43 H 1.08993 * 110.82676 * 210.80554 * 23 2 1 44 44 H 1.09002 * 110.81597 * 334.15574 * 23 2 1 45 45 H 1.08997 * 110.30303 * 145.27772 * 24 23 2 46 46 H 1.09002 * 110.30745 * 267.42058 * 24 23 2 47 47 H 1.07994 * 119.89238 * 359.97438 * 26 25 24 48 48 H 1.08001 * 120.03591 * 179.97438 * 27 26 25 49 49 H 1.08001 * 120.03406 * 180.02562 * 28 27 26 50 50 H 1.08003 * 119.89548 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0520 1.4137 0.0000 4 8 2.7898 1.7877 -0.8870 5 7 1.6991 2.2624 0.9857 6 6 2.0497 3.6851 1.0460 7 6 1.4612 4.2640 2.3423 8 1 2.1296 4.9744 2.8287 9 6 0.0708 4.8572 2.0495 10 7 -0.7931 4.4808 3.1745 11 6 -1.9807 5.0817 3.4968 12 1 -2.3072 5.9573 2.9553 13 6 -2.7649 4.5654 4.5191 14 7 -2.3168 3.5688 5.2531 15 14 -4.4562 5.2847 4.8534 16 1 -5.4840 4.4847 4.1402 17 1 -4.7282 5.2522 6.3128 18 1 -4.5005 6.6891 4.3726 19 6 -0.1856 3.3598 3.8992 20 6 1.1438 3.0144 3.2101 21 1 1.9368 2.7753 3.9187 22 6 0.8982 1.9090 2.1637 23 6 2.0656 -0.7687 1.2266 24 6 2.2441 -2.1972 0.6701 25 6 2.4655 -2.0186 -0.8166 26 6 2.9849 -2.8915 -1.7580 27 6 3.0945 -2.5043 -3.0791 28 6 2.6840 -1.2415 -3.4642 29 6 2.1658 -0.3696 -2.5270 30 6 2.0552 -0.7560 -1.2016 31 1 -0.3633 0.3894 0.9510 32 1 -0.3633 0.6289 -0.8128 33 1 -0.3633 -1.0184 -0.1383 34 1 3.1338 3.7977 1.0509 35 1 1.6290 4.2053 0.1855 36 1 0.1362 5.9427 1.9761 37 1 -0.3236 4.4432 1.1214 38 1 -2.8646 3.2082 5.9677 39 1 -0.0006 3.6470 4.9343 40 1 -0.8516 2.4974 3.8694 41 1 -0.1583 1.8703 1.8986 42 1 1.2200 0.9452 2.5582 43 1 3.0207 -0.3584 1.5543 44 1 1.3401 -0.7542 2.0399 45 1 3.1105 -2.6755 1.1267 46 1 1.3462 -2.7883 0.8504 47 1 3.3062 -3.8779 -1.4578 48 1 3.5004 -3.1872 -3.8107 49 1 2.7686 -0.9372 -4.4970 50 1 1.8457 0.6169 -2.8285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049242588.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:19 Heat of formation + Delta-G solvation = 25.027977 kcal Electronic energy + Delta-G solvation = -30644.868771 eV Core-core repulsion = 26830.300727 eV Total energy + Delta-G solvation = -3814.568044 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.20394 -39.67646 -38.03219 -36.11068 -34.98890 -32.47000 -31.97031 -30.37251 -30.00705 -29.22076 -28.85212 -25.93975 -25.56116 -25.15618 -23.26597 -22.76060 -21.08596 -21.00594 -20.23118 -19.39355 -18.95403 -17.07083 -16.60349 -16.21966 -15.87931 -15.49116 -15.28304 -14.92861 -14.74732 -14.44722 -14.10438 -13.82735 -13.59830 -13.30571 -13.18108 -13.06518 -12.93978 -12.62986 -12.38780 -12.34037 -12.10633 -11.89052 -11.76930 -11.68400 -11.47244 -11.33965 -11.14732 -10.93088 -10.90316 -10.83579 -10.73460 -10.34646 -10.15364 -10.01347 -9.95973 -9.71103 -9.48590 -8.82208 -8.64197 -8.61145 -8.37418 -6.88298 -5.78903 -3.11326 1.27998 1.37962 2.74302 3.16432 3.36593 3.42588 3.43898 3.73303 4.17096 4.26920 4.44838 4.58096 4.79260 4.84030 4.88596 4.93683 5.01474 5.06717 5.11370 5.22387 5.34478 5.39853 5.44713 5.47691 5.49180 5.56513 5.59675 5.65011 5.71564 5.74801 5.80156 5.87495 5.89689 5.91102 5.93979 6.06337 6.10432 6.17261 6.22484 6.32765 6.38470 6.46004 6.51124 6.58789 6.62581 6.64120 6.81937 6.94926 7.45699 7.51567 7.71328 7.75409 8.20524 8.30734 9.16875 9.77067 10.41175 11.33064 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019530 B = 0.002846 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.350279 B = 9835.893915 C =10234.597756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.035 4.035 3 C 0.538 3.462 4 O -0.542 6.542 5 N -0.607 5.607 6 C 0.120 3.880 7 C -0.109 4.109 8 H 0.096 0.904 9 C 0.143 3.857 10 N -0.602 5.602 11 C -0.229 4.229 12 H 0.078 0.922 13 C -0.006 4.006 14 N -0.921 5.921 15 Si 0.911 3.089 16 H -0.289 1.289 17 H -0.291 1.291 18 H -0.281 1.281 19 C 0.187 3.813 20 C -0.122 4.122 21 H 0.088 0.912 22 C 0.102 3.898 23 C -0.112 4.112 24 C -0.079 4.079 25 C -0.094 4.094 26 C -0.115 4.115 27 C -0.119 4.119 28 C -0.128 4.128 29 C -0.074 4.074 30 C -0.069 4.069 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.035 0.965 37 H 0.019 0.981 38 H 0.253 0.747 39 H 0.045 0.955 40 H 0.052 0.948 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.118 0.882 48 H 0.121 0.879 49 H 0.121 0.879 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.382 -12.231 -10.226 19.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.038 4.038 3 C 0.326 3.674 4 O -0.419 6.419 5 N -0.339 5.339 6 C -0.003 4.003 7 C -0.129 4.129 8 H 0.114 0.886 9 C 0.017 3.983 10 N -0.329 5.329 11 C -0.357 4.357 12 H 0.096 0.904 13 C -0.202 4.202 14 N -0.569 5.569 15 Si 0.741 3.259 16 H -0.216 1.216 17 H -0.217 1.217 18 H -0.207 1.207 19 C 0.062 3.938 20 C -0.142 4.142 21 H 0.106 0.894 22 C -0.020 4.020 23 C -0.149 4.149 24 C -0.116 4.116 25 C -0.094 4.094 26 C -0.133 4.133 27 C -0.137 4.137 28 C -0.146 4.146 29 C -0.092 4.092 30 C -0.070 4.070 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.053 0.947 37 H 0.036 0.964 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.110 0.890 45 H 0.096 0.904 46 H 0.102 0.898 47 H 0.136 0.864 48 H 0.139 0.861 49 H 0.139 0.861 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.613 -12.091 -10.597 19.264 hybrid contribution -0.900 0.456 0.192 1.027 sum 9.714 -11.635 -10.405 18.384 Atomic orbital electron populations 1.21953 0.91114 1.03015 1.03825 1.20253 0.97487 0.91682 0.94408 1.19998 0.80396 0.86313 0.80681 1.90670 1.36544 1.77899 1.36817 1.48258 1.53017 1.10007 1.22667 1.21729 0.99441 0.80815 0.98333 1.22867 0.98272 0.97521 0.94229 0.88593 1.21318 0.88127 0.97181 0.91676 1.44227 1.21811 1.37397 1.29443 1.19057 0.93860 1.08173 1.14587 0.90420 1.24795 0.98716 0.98418 0.98318 1.69955 1.36555 1.28086 1.22278 0.86113 0.84241 0.78328 0.77187 1.21607 1.21745 1.20655 1.20992 0.87301 0.91454 0.94089 1.23220 1.01268 0.93325 0.96375 0.89361 1.22549 0.95952 0.98751 0.84725 1.22505 1.02072 0.94285 0.96052 1.21033 1.02451 0.97222 0.90879 1.20544 0.98649 0.94417 0.95747 1.20524 1.00979 0.99181 0.92638 1.21008 1.00402 0.96521 0.95725 1.21031 1.00173 0.94046 0.99310 1.20678 0.97624 0.99189 0.91665 1.19957 0.99246 0.94401 0.93386 0.90303 0.91967 0.91321 0.92031 0.91535 0.94677 0.96359 0.93714 0.93642 0.92974 0.90270 0.90935 0.90508 0.88982 0.90409 0.89766 0.86398 0.86122 0.86053 0.86053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.19 37.16 0.30 -1.43 16 2 C -0.04 -0.46 0.54 -155.78 -0.08 -0.54 16 3 C 0.54 8.49 6.48 -10.98 -0.07 8.42 16 4 O -0.54 -10.08 15.07 5.56 0.08 -10.00 16 5 N -0.61 -9.30 3.30 -172.21 -0.57 -9.87 16 6 C 0.12 1.83 6.19 -3.61 -0.02 1.81 16 7 C -0.11 -1.78 4.10 -88.47 -0.36 -2.14 16 8 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 9 C 0.14 2.83 6.42 -3.39 -0.02 2.81 16 10 N -0.60 -14.50 3.38 -171.89 -0.58 -15.08 16 11 C -0.23 -6.12 10.24 -15.06 -0.15 -6.28 16 12 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 13 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 14 N -0.92 -25.68 10.28 55.49 0.57 -25.11 16 15 Si 0.91 21.46 29.56 -169.99 -5.02 16.43 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 C 0.19 4.12 4.73 -3.61 -0.02 4.10 16 20 C -0.12 -2.03 4.12 -88.37 -0.36 -2.40 16 21 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 22 C 0.10 1.53 4.43 -3.28 -0.01 1.52 16 23 C -0.11 -1.21 4.72 -25.32 -0.12 -1.33 16 24 C -0.08 -0.75 6.76 -26.85 -0.18 -0.94 16 25 C -0.09 -1.09 6.14 -104.21 -0.64 -1.73 16 26 C -0.12 -1.21 10.04 -39.54 -0.40 -1.60 16 27 C -0.12 -1.21 10.05 -39.63 -0.40 -1.61 16 28 C -0.13 -1.45 10.05 -39.63 -0.40 -1.84 16 29 C -0.07 -0.99 8.92 -39.54 -0.35 -1.35 16 30 C -0.07 -0.93 4.66 -104.20 -0.49 -1.42 16 31 H 0.08 0.98 5.12 -51.93 -0.27 0.71 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.05 7.63 -51.93 -0.40 0.65 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 38 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 39 H 0.05 1.13 7.52 -51.93 -0.39 0.74 16 40 H 0.05 1.26 6.80 -51.93 -0.35 0.91 16 41 H 0.08 1.33 6.07 -51.93 -0.32 1.01 16 42 H 0.07 0.93 5.14 -51.93 -0.27 0.66 16 43 H 0.08 0.87 7.91 -51.93 -0.41 0.46 16 44 H 0.09 0.88 6.36 -51.93 -0.33 0.55 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 48 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 49 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 50 H 0.12 1.72 7.51 -52.48 -0.39 1.33 16 LS Contribution 378.20 15.07 5.70 5.70 Total: -1.00 -31.00 378.20 -11.41 -42.40 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.71 Total: 1.70 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -3.87 Total: -6.19 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: -0.58 Total: -50.05 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.00 -11.41 -42.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049242588.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.431 kcal (2) G-P(sol) polarization free energy of solvation -30.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds