Wall clock time and date at job start Sat Apr 11 2020 06:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 110.26865 * 2 1 4 4 O 1.21278 * 120.00163 * 237.61732 * 3 2 1 5 5 N 1.34781 * 119.99879 * 57.61890 * 3 2 1 6 6 C 1.46654 * 125.33239 * 185.09099 * 5 3 2 7 7 C 1.53679 * 107.97016 * 180.70700 * 6 5 3 8 8 H 1.08999 * 112.77496 * 140.60841 * 7 6 5 9 9 C 1.53981 * 109.29991 * 266.93249 * 7 6 5 10 10 N 1.46756 * 106.67736 * 138.83035 * 9 7 6 11 11 C 1.36940 * 125.33339 * 161.57860 * 10 9 7 12 12 H 1.08000 * 119.99686 * 354.66468 * 11 10 9 13 13 C 1.38809 * 120.00189 * 174.65274 * 11 10 9 14 14 N 1.31629 * 119.99665 * 5.74283 * 13 11 10 15 15 Si 1.86801 * 120.00373 * 185.74119 * 13 11 10 16 16 H 1.48495 * 109.46930 * 94.99554 * 15 13 11 17 17 H 1.48497 * 109.46869 * 214.99985 * 15 13 11 18 18 H 1.48506 * 109.46591 * 334.99694 * 15 13 11 19 19 C 1.46654 * 109.33091 * 341.55296 * 10 9 7 20 20 C 1.53670 * 107.97382 * 0.70704 * 19 10 9 21 21 H 1.09000 * 112.77775 * 139.89133 * 20 19 10 22 22 C 1.46756 * 125.33135 * 4.78098 * 5 3 2 23 23 C 1.54347 * 110.30663 * 122.07480 * 2 1 3 24 24 C 1.54342 * 102.38834 * 92.57611 * 23 2 1 25 25 C 1.51364 * 105.17823 * 26.35123 * 24 23 2 26 26 C 1.38491 * 130.40050 * 162.80665 * 25 24 23 27 27 C 1.38104 * 120.21869 * 180.02562 * 26 25 24 28 28 C 1.38251 * 119.93443 * 359.97438 * 27 26 25 29 29 C 1.38101 * 119.93639 * 0.02562 * 28 27 26 30 30 C 1.38223 * 109.75299 * 342.81123 * 25 24 23 31 31 H 1.08996 * 109.47076 * 292.26538 * 1 2 3 32 32 H 1.08998 * 109.47156 * 52.26895 * 1 2 3 33 33 H 1.09003 * 109.46963 * 172.26608 * 1 2 3 34 34 H 1.08998 * 109.76758 * 300.33655 * 6 5 3 35 35 H 1.09002 * 109.76790 * 61.06680 * 6 5 3 36 36 H 1.08999 * 110.01641 * 258.13869 * 9 7 6 37 37 H 1.09003 * 110.01621 * 19.52663 * 9 7 6 38 38 H 0.97001 * 119.99855 * 179.97438 * 14 13 11 39 39 H 1.09005 * 109.76950 * 120.33734 * 19 10 9 40 40 H 1.09002 * 109.76321 * 241.05980 * 19 10 9 41 41 H 1.08995 * 110.01709 * 280.85460 * 22 5 3 42 42 H 1.08999 * 110.01847 * 42.25318 * 22 5 3 43 43 H 1.08993 * 110.82676 * 210.80554 * 23 2 1 44 44 H 1.09002 * 110.81597 * 334.15574 * 23 2 1 45 45 H 1.08997 * 110.30303 * 145.27772 * 24 23 2 46 46 H 1.09002 * 110.30745 * 267.42058 * 24 23 2 47 47 H 1.07994 * 119.89238 * 359.97438 * 26 25 24 48 48 H 1.08001 * 120.03591 * 179.97438 * 27 26 25 49 49 H 1.08001 * 120.03406 * 180.02562 * 28 27 26 50 50 H 1.08003 * 119.89548 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0520 1.4137 0.0000 4 8 2.7898 1.7877 -0.8870 5 7 1.6991 2.2624 0.9857 6 6 2.0497 3.6851 1.0460 7 6 1.4612 4.2640 2.3423 8 1 2.1296 4.9744 2.8287 9 6 0.0708 4.8572 2.0495 10 7 -0.7931 4.4808 3.1745 11 6 -1.9807 5.0817 3.4968 12 1 -2.3072 5.9573 2.9553 13 6 -2.7649 4.5654 4.5191 14 7 -2.3168 3.5688 5.2531 15 14 -4.4562 5.2847 4.8534 16 1 -5.4840 4.4847 4.1402 17 1 -4.7282 5.2522 6.3128 18 1 -4.5005 6.6891 4.3726 19 6 -0.1856 3.3598 3.8992 20 6 1.1438 3.0144 3.2101 21 1 1.9368 2.7753 3.9187 22 6 0.8982 1.9090 2.1637 23 6 2.0656 -0.7687 1.2266 24 6 2.2441 -2.1972 0.6701 25 6 2.4655 -2.0186 -0.8166 26 6 2.9849 -2.8915 -1.7580 27 6 3.0945 -2.5043 -3.0791 28 6 2.6840 -1.2415 -3.4642 29 6 2.1658 -0.3696 -2.5270 30 6 2.0552 -0.7560 -1.2016 31 1 -0.3633 0.3894 0.9510 32 1 -0.3633 0.6289 -0.8128 33 1 -0.3633 -1.0184 -0.1383 34 1 3.1338 3.7977 1.0509 35 1 1.6290 4.2053 0.1855 36 1 0.1362 5.9427 1.9761 37 1 -0.3236 4.4432 1.1214 38 1 -2.8646 3.2082 5.9677 39 1 -0.0006 3.6470 4.9343 40 1 -0.8516 2.4974 3.8694 41 1 -0.1583 1.8703 1.8986 42 1 1.2200 0.9452 2.5582 43 1 3.0207 -0.3584 1.5543 44 1 1.3401 -0.7542 2.0399 45 1 3.1105 -2.6755 1.1267 46 1 1.3462 -2.7883 0.8504 47 1 3.3062 -3.8779 -1.4578 48 1 3.5004 -3.1872 -3.8107 49 1 2.7686 -0.9372 -4.4970 50 1 1.8457 0.6169 -2.8285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049242588.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:18 Heat of formation + Delta-G solvation = 9.287432 kcal Electronic energy + Delta-G solvation = -30645.551333 eV Core-core repulsion = 26830.300727 eV Total energy + Delta-G solvation = -3815.250606 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.27821 -40.87870 -39.32729 -37.07242 -36.57111 -34.10986 -33.01716 -31.64681 -31.59420 -30.39813 -29.67921 -27.45946 -27.06352 -26.40328 -24.65838 -23.62892 -22.27190 -21.88889 -21.80786 -20.82897 -20.11405 -18.83785 -17.82331 -17.31192 -17.06973 -16.74768 -16.51713 -16.21533 -15.81465 -15.77296 -15.53716 -15.09823 -14.81787 -14.69426 -14.24447 -14.21756 -13.95203 -13.76139 -13.60281 -13.59513 -13.41557 -13.26599 -13.16822 -12.92928 -12.74178 -12.68351 -12.55503 -12.39009 -12.01549 -11.97605 -11.87293 -11.79994 -11.70402 -11.61565 -11.46337 -11.41204 -10.75781 -10.62908 -9.70003 -9.65318 -9.45117 -8.85546 -7.84669 -5.18323 0.42685 0.51402 1.47912 1.48828 1.52167 1.57315 1.96839 2.50608 2.86414 3.19334 3.33247 3.36636 3.43431 3.50479 3.75297 3.85367 3.93814 3.96561 4.05017 4.12889 4.19206 4.22163 4.26353 4.32526 4.44715 4.50842 4.57826 4.61166 4.63106 4.68992 4.73716 4.81023 4.84882 4.87951 4.91309 4.98122 5.03374 5.06287 5.13542 5.15458 5.20428 5.25038 5.26635 5.35189 5.50066 5.57768 5.63593 5.66810 5.74282 5.80834 6.12549 6.23623 6.47426 7.07058 7.14568 7.80834 8.42852 9.25402 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019530 B = 0.002846 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.350279 B = 9835.893915 C =10234.597756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.033 4.033 3 C 0.534 3.466 4 O -0.574 6.574 5 N -0.606 5.606 6 C 0.123 3.877 7 C -0.095 4.095 8 H 0.116 0.884 9 C 0.141 3.859 10 N -0.622 5.622 11 C -0.244 4.244 12 H 0.076 0.924 13 C -0.057 4.057 14 N -0.943 5.943 15 Si 0.972 3.028 16 H -0.288 1.288 17 H -0.293 1.293 18 H -0.273 1.273 19 C 0.198 3.802 20 C -0.110 4.110 21 H 0.116 0.884 22 C 0.112 3.888 23 C -0.111 4.111 24 C -0.073 4.073 25 C -0.100 4.100 26 C -0.117 4.117 27 C -0.117 4.117 28 C -0.136 4.136 29 C -0.100 4.100 30 C -0.096 4.096 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.037 0.963 37 H 0.011 0.989 38 H 0.248 0.752 39 H 0.012 0.988 40 H 0.025 0.975 41 H 0.059 0.941 42 H 0.101 0.899 43 H 0.072 0.928 44 H 0.106 0.894 45 H 0.096 0.904 46 H 0.101 0.899 47 H 0.147 0.853 48 H 0.151 0.849 49 H 0.137 0.863 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.553 -14.123 -10.336 20.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.036 4.036 3 C 0.324 3.676 4 O -0.454 6.454 5 N -0.339 5.339 6 C 0.000 4.000 7 C -0.115 4.115 8 H 0.134 0.866 9 C 0.015 3.985 10 N -0.348 5.348 11 C -0.373 4.373 12 H 0.094 0.906 13 C -0.251 4.251 14 N -0.591 5.591 15 Si 0.801 3.199 16 H -0.215 1.215 17 H -0.220 1.220 18 H -0.197 1.197 19 C 0.072 3.928 20 C -0.130 4.130 21 H 0.134 0.866 22 C -0.010 4.010 23 C -0.148 4.148 24 C -0.110 4.110 25 C -0.100 4.100 26 C -0.135 4.135 27 C -0.135 4.135 28 C -0.154 4.154 29 C -0.118 4.118 30 C -0.096 4.096 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.029 0.971 38 H 0.058 0.942 39 H 0.030 0.970 40 H 0.043 0.957 41 H 0.077 0.923 42 H 0.119 0.881 43 H 0.091 0.909 44 H 0.124 0.876 45 H 0.115 0.885 46 H 0.119 0.881 47 H 0.164 0.836 48 H 0.168 0.832 49 H 0.154 0.846 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.792 -13.971 -10.722 21.194 hybrid contribution -1.264 1.082 0.137 1.669 sum 10.529 -12.889 -10.585 19.724 Atomic orbital electron populations 1.21908 0.90928 1.03632 1.02897 1.20302 0.97518 0.89976 0.95821 1.20580 0.79742 0.87363 0.79897 1.90649 1.38129 1.78723 1.37887 1.48294 1.52796 1.10004 1.22768 1.21681 1.00084 0.80879 0.97365 1.22796 0.96468 0.97489 0.94711 0.86596 1.21436 0.89497 0.97462 0.90085 1.44503 1.21858 1.37830 1.30653 1.19363 0.95173 1.08315 1.14474 0.90583 1.25531 1.01858 0.99177 0.98500 1.70142 1.37349 1.29120 1.22528 0.85161 0.80207 0.77985 0.76580 1.21543 1.21981 1.19743 1.20728 0.89306 0.89799 0.92921 1.23117 0.98940 0.94126 0.96828 0.86635 1.22405 0.94940 0.99482 0.84133 1.22551 1.02035 0.94849 0.95360 1.21072 1.04074 0.96461 0.89369 1.20873 0.98237 0.93791 0.97145 1.20922 0.99953 1.00159 0.92469 1.21393 0.99320 0.96230 0.96532 1.21279 0.99902 0.94488 0.99755 1.20715 0.99414 0.98955 0.92760 1.20117 1.00610 0.95597 0.93290 0.90621 0.93670 0.89649 0.90643 0.92252 0.94485 0.97090 0.94232 0.96976 0.95679 0.92277 0.88106 0.90932 0.87608 0.88522 0.88068 0.83575 0.83175 0.84559 0.88319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.19 71.98 0.59 -2.71 16 2 C -0.03 -0.84 0.54 -53.00 -0.03 -0.87 16 3 C 0.53 16.79 6.48 87.66 0.57 17.36 16 4 O -0.57 -21.71 15.07 -3.02 -0.05 -21.75 16 5 N -0.61 -18.16 3.30 -817.14 -2.70 -20.85 16 6 C 0.12 3.64 6.19 86.58 0.54 4.18 16 7 C -0.10 -2.98 4.10 -9.40 -0.04 -3.02 16 8 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 9 C 0.14 5.58 6.42 86.66 0.56 6.13 16 10 N -0.62 -30.49 3.38 -697.73 -2.36 -32.85 16 11 C -0.24 -13.32 10.24 84.03 0.86 -12.46 16 12 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 13 C -0.06 -3.13 5.48 84.86 0.47 -2.66 16 14 N -0.94 -53.75 10.28 21.65 0.22 -53.53 16 15 Si 0.97 44.62 29.56 68.60 2.03 46.65 16 16 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 17 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 C 0.20 8.87 4.73 86.58 0.41 9.28 16 20 C -0.11 -3.56 4.12 -9.34 -0.04 -3.60 16 21 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 22 C 0.11 3.26 4.43 86.73 0.38 3.65 16 23 C -0.11 -2.14 4.72 31.51 0.15 -1.99 16 24 C -0.07 -1.17 6.76 30.51 0.21 -0.96 16 25 C -0.10 -2.12 6.14 -19.60 -0.12 -2.24 16 26 C -0.12 -2.10 10.04 22.30 0.22 -1.88 16 27 C -0.12 -2.10 10.05 22.24 0.22 -1.87 16 28 C -0.14 -2.99 10.05 22.24 0.22 -2.76 16 29 C -0.10 -2.76 8.92 22.30 0.20 -2.56 16 30 C -0.10 -2.51 4.66 -19.59 -0.09 -2.60 16 31 H 0.08 1.85 5.12 -2.39 -0.01 1.84 16 32 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.75 8.12 -2.39 -0.02 1.73 16 34 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.06 1.86 7.63 -2.39 -0.02 1.84 16 36 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16 38 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 39 H 0.01 0.62 7.52 -2.38 -0.02 0.60 16 40 H 0.03 1.25 6.80 -2.39 -0.02 1.23 16 41 H 0.06 2.00 6.07 -2.39 -0.01 1.98 16 42 H 0.10 2.37 5.14 -2.39 -0.01 2.35 16 43 H 0.07 1.48 7.91 -2.39 -0.02 1.46 16 44 H 0.11 1.72 6.36 -2.39 -0.02 1.71 16 45 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 48 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 49 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 50 H 0.10 3.03 7.51 -2.91 -0.02 3.01 16 Total: -1.00 -69.21 378.20 3.36 -65.85 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.94 Total: 18.08 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 5.28 Total: -1.58 kcal Atomic # 7 Polarization: -102.40 SS G_CDS: -4.83 Total: -107.23 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.05 Total: -21.75 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -69.21 3.36 -65.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049242588.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.135 kcal (2) G-P(sol) polarization free energy of solvation -69.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds