Wall clock time and date at job start Sat Apr 11 2020 06:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38262 * 120.00387 * 2 1 4 4 C 1.38207 * 120.00450 * 180.25782 * 3 2 1 5 5 C 1.38260 * 119.99815 * 359.76389 * 4 3 2 6 6 C 1.38217 * 119.99779 * 0.02847 * 5 4 3 7 7 C 1.38216 * 120.00081 * 179.79516 * 2 1 3 8 8 C 1.50704 * 120.00035 * 359.97438 * 7 2 1 9 9 C 1.50694 * 115.54904 * 295.04790 * 8 7 2 10 10 O 1.21283 * 120.00148 * 100.31580 * 9 8 7 11 11 N 1.34771 * 120.00416 * 280.31383 * 9 8 7 12 12 C 1.46766 * 125.33094 * 356.25808 * 11 9 8 13 13 C 1.53978 * 106.67328 * 198.41358 * 12 11 9 14 14 H 1.09006 * 113.35268 * 94.44929 * 13 12 11 15 15 C 1.53679 * 109.29475 * 221.16268 * 13 12 11 16 16 N 1.46659 * 107.96995 * 93.06798 * 15 13 12 17 17 C 1.36937 * 125.33563 * 179.31008 * 16 15 13 18 18 H 1.08000 * 120.00149 * 349.26517 * 17 16 15 19 19 C 1.38804 * 120.00016 * 169.26172 * 17 16 15 20 20 N 1.31627 * 120.00225 * 2.97432 * 19 17 16 21 21 Si 1.86801 * 119.99959 * 182.97249 * 19 17 16 22 22 H 1.48497 * 109.47263 * 94.99293 * 21 19 17 23 23 H 1.48504 * 109.46976 * 214.99031 * 21 19 17 24 24 H 1.48494 * 109.47182 * 334.98764 * 21 19 17 25 25 C 1.46758 * 109.33280 * 359.29688 * 16 15 13 26 26 C 1.53985 * 106.67546 * 18.44409 * 25 16 15 27 27 H 1.08998 * 112.79847 * 94.86330 * 26 25 16 28 28 C 1.46660 * 125.33968 * 176.21548 * 11 9 8 29 29 C 1.53000 * 117.51457 * 80.74848 * 8 7 2 30 30 C 1.53001 * 117.49770 * 149.37736 * 8 7 2 31 31 H 1.08999 * 109.46658 * 265.11970 * 1 2 3 32 32 H 1.08998 * 109.47127 * 25.11854 * 1 2 3 33 33 H 1.09002 * 109.46905 * 145.12404 * 1 2 3 34 34 H 1.08005 * 119.99044 * 0.04423 * 3 2 1 35 35 H 1.07997 * 120.00378 * 179.79032 * 4 3 2 36 36 H 1.08003 * 119.99965 * 179.97438 * 5 4 3 37 37 H 1.08006 * 119.99467 * 179.97438 * 6 5 4 38 38 H 1.08997 * 110.01449 * 317.71529 * 12 11 9 39 39 H 1.08993 * 110.01585 * 79.06261 * 12 11 9 40 40 H 1.09000 * 109.76894 * 333.43864 * 15 13 12 41 41 H 1.09002 * 109.77093 * 212.69732 * 15 13 12 42 42 H 0.97003 * 119.99739 * 180.02562 * 20 19 17 43 43 H 1.08990 * 110.02404 * 137.75148 * 25 16 15 44 44 H 1.09005 * 110.01576 * 259.14694 * 25 16 15 45 45 H 1.09000 * 109.76729 * 59.70106 * 28 11 9 46 46 H 1.09001 * 109.77622 * 298.96340 * 28 11 9 47 47 H 1.08999 * 117.49718 * 214.97262 * 29 8 7 48 48 H 1.08997 * 117.50253 * 359.97438 * 29 8 7 49 49 H 1.08996 * 117.49915 * 359.97438 * 30 8 7 50 50 H 1.08997 * 117.49573 * 145.00391 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1974 -0.0054 5 6 4.2718 0.0000 -0.0058 6 6 3.5806 -1.1970 -0.0015 7 6 2.1981 -1.1970 0.0043 8 6 1.4446 -2.5021 0.0095 9 6 0.6217 -2.7725 1.2426 10 8 -0.5756 -2.5793 1.2270 11 7 1.2159 -3.2290 2.3628 12 6 2.6364 -3.5762 2.4888 13 6 2.7646 -4.4649 3.7397 14 1 2.7285 -5.5314 3.5176 15 6 4.0249 -4.0624 4.5215 16 7 3.6338 -3.0756 5.5335 17 6 4.4800 -2.4889 6.4362 18 1 5.4851 -2.8649 6.5576 19 6 4.0460 -1.4108 7.1952 20 7 2.8034 -0.9895 7.0898 21 14 5.2253 -0.5578 8.3661 22 1 5.8314 0.6170 7.6896 23 1 4.4856 -0.1072 9.5724 24 1 6.2962 -1.5051 8.7673 25 6 2.1935 -2.8152 5.4270 26 6 1.5887 -3.9920 4.6392 27 1 1.1928 -4.7745 5.2865 28 6 0.5449 -3.4559 3.6469 29 6 0.9018 -3.0102 -1.3276 30 6 2.1026 -3.7004 -0.6775 31 1 -0.3632 -0.0874 1.0240 32 1 -0.3633 0.9305 -0.4362 33 1 -0.3633 -0.8431 -0.5876 34 1 1.6583 2.1326 0.0007 35 1 4.1205 2.1326 -0.0088 36 1 5.3518 0.0000 -0.0105 37 1 4.1207 -2.1323 -0.0023 38 1 2.9662 -4.1243 1.6063 39 1 3.2322 -2.6716 2.6103 40 1 4.7559 -3.6239 3.8422 41 1 4.4529 -4.9392 5.0077 42 1 2.5003 -0.2358 7.6200 43 1 1.7490 -2.7639 6.4208 44 1 2.0218 -1.8809 4.8923 45 1 -0.2538 -4.1869 3.5214 46 1 0.1314 -2.5180 4.0177 47 1 -0.0507 -3.5401 -1.3154 48 1 1.0892 -2.4004 -2.2114 49 1 3.0802 -3.5447 -1.1336 50 1 1.9401 -4.6844 -0.2376 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049249987.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:36 Heat of formation + Delta-G solvation = 47.105815 kcal Electronic energy + Delta-G solvation = -31116.802139 eV Core-core repulsion = 27303.191461 eV Total energy + Delta-G solvation = -3813.610678 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.80226 -39.42800 -38.17785 -36.32739 -34.94510 -32.67570 -32.24474 -30.65839 -30.31789 -29.48712 -26.86341 -25.99018 -25.49714 -24.48651 -23.06461 -22.58431 -21.43833 -21.01631 -20.18879 -19.28002 -18.72217 -17.23263 -16.79487 -16.36550 -15.86865 -15.42870 -15.11529 -14.97563 -14.64766 -14.43928 -14.10227 -13.72114 -13.61427 -13.38196 -13.17641 -13.02599 -12.73014 -12.49933 -12.17553 -12.03383 -11.93060 -11.87281 -11.71925 -11.61910 -11.39972 -11.27111 -11.16859 -10.90818 -10.81700 -10.58656 -10.48237 -10.39354 -10.08950 -10.06713 -9.83861 -9.64395 -9.62232 -8.73476 -8.60692 -8.49927 -8.30579 -6.81372 -5.75199 -3.10614 1.33802 1.44608 2.75230 3.12026 3.38295 3.43548 3.45649 3.53233 3.84817 4.42836 4.46557 4.50478 4.69665 4.82788 4.87342 4.96582 5.00807 5.09532 5.11770 5.26229 5.37303 5.42454 5.49535 5.52664 5.57834 5.59575 5.64828 5.68141 5.71610 5.77538 5.87930 5.89173 5.91797 5.96255 6.00993 6.06837 6.21103 6.27384 6.34982 6.36628 6.49920 6.51604 6.55381 6.56948 6.66292 6.70180 6.84284 7.04127 7.53134 7.58106 7.77193 7.78949 8.26868 8.35434 9.19510 9.80290 10.45475 11.35964 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011247 B = 0.004159 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.945766 B = 6730.588110 C = 7815.775292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.066 4.066 3 C -0.122 4.122 4 C -0.113 4.113 5 C -0.124 4.124 6 C -0.102 4.102 7 C -0.048 4.048 8 C -0.106 4.106 9 C 0.568 3.432 10 O -0.540 6.540 11 N -0.599 5.599 12 C 0.113 3.887 13 C -0.109 4.109 14 H 0.088 0.912 15 C 0.146 3.854 16 N -0.601 5.601 17 C -0.231 4.231 18 H 0.077 0.923 19 C -0.004 4.004 20 N -0.918 5.918 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.182 3.818 26 C -0.124 4.124 27 H 0.092 0.908 28 C 0.120 3.880 29 C -0.137 4.137 30 C -0.161 4.161 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.025 0.975 41 H 0.024 0.976 42 H 0.253 0.747 43 H 0.071 0.929 44 H 0.029 0.971 45 H 0.059 0.941 46 H 0.072 0.928 47 H 0.103 0.897 48 H 0.103 0.897 49 H 0.106 0.894 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.186 -3.319 -17.476 17.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.066 4.066 3 C -0.140 4.140 4 C -0.131 4.131 5 C -0.143 4.143 6 C -0.120 4.120 7 C -0.049 4.049 8 C -0.110 4.110 9 C 0.355 3.645 10 O -0.417 6.417 11 N -0.331 5.331 12 C -0.010 4.010 13 C -0.128 4.128 14 H 0.106 0.894 15 C 0.020 3.980 16 N -0.327 5.327 17 C -0.359 4.359 18 H 0.095 0.905 19 C -0.201 4.201 20 N -0.565 5.565 21 Si 0.741 3.259 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.057 3.943 26 C -0.144 4.144 27 H 0.110 0.890 28 C -0.002 4.002 29 C -0.175 4.175 30 C -0.198 4.198 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.043 0.957 41 H 0.042 0.958 42 H 0.063 0.937 43 H 0.089 0.911 44 H 0.047 0.953 45 H 0.078 0.922 46 H 0.090 0.910 47 H 0.122 0.878 48 H 0.121 0.879 49 H 0.124 0.876 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.873 -3.010 -17.373 17.731 hybrid contribution 0.783 0.632 0.806 1.289 sum -1.090 -2.379 -16.567 16.773 Atomic orbital electron populations 1.20872 0.90645 1.02347 1.03295 1.19821 0.96472 0.92283 0.98006 1.21017 0.94287 0.97319 1.01388 1.21142 0.94277 0.98118 0.99582 1.21075 0.99868 0.92342 1.00966 1.20970 0.93093 0.98363 0.99533 1.18521 0.92687 0.91180 1.02492 1.19881 1.03180 0.94452 0.93440 1.18879 0.86783 0.76517 0.82289 1.90668 1.14601 1.52893 1.83576 1.48154 1.10680 1.63909 1.10346 1.22166 0.81777 0.99177 0.97843 1.22791 0.97288 0.98400 0.94348 0.89370 1.21069 0.93202 0.92906 0.90848 1.44201 1.04485 1.48032 1.35969 1.19010 0.94577 1.09108 1.13252 0.90536 1.24853 0.96725 0.97948 1.00530 1.69944 1.14627 1.28234 1.43667 0.86126 0.79934 0.79728 0.80143 1.21598 1.21703 1.20566 1.21255 0.83614 0.90935 0.98474 1.23231 0.94041 1.00727 0.96376 0.88972 1.21768 0.95174 1.00922 0.82343 1.23032 0.98468 1.02101 0.93854 1.23178 0.98281 0.95716 1.02669 0.90751 0.92258 0.90581 0.86091 0.86145 0.85965 0.85931 0.91417 0.90703 0.95693 0.95814 0.93668 0.91088 0.95320 0.92230 0.91018 0.87843 0.87852 0.87580 0.88028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.58 8.29 36.01 0.30 -1.28 16 2 C -0.07 -0.93 5.85 -104.62 -0.61 -1.54 16 3 C -0.12 -1.60 9.68 -39.58 -0.38 -1.98 16 4 C -0.11 -1.40 10.05 -39.58 -0.40 -1.80 16 5 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 6 C -0.10 -1.30 9.23 -39.58 -0.37 -1.66 16 7 C -0.05 -0.67 5.12 -104.62 -0.54 -1.20 16 8 C -0.11 -1.39 0.49 -156.81 -0.08 -1.47 16 9 C 0.57 9.31 6.37 -10.99 -0.07 9.24 16 10 O -0.54 -10.15 15.43 5.55 0.09 -10.06 16 11 N -0.60 -9.93 3.31 -172.33 -0.57 -10.50 16 12 C 0.11 1.75 5.76 -3.39 -0.02 1.73 16 13 C -0.11 -1.76 4.10 -88.48 -0.36 -2.12 16 14 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 15 C 0.15 2.86 6.58 -3.60 -0.02 2.84 16 16 N -0.60 -14.87 3.38 -171.88 -0.58 -15.45 16 17 C -0.23 -6.32 10.23 -15.06 -0.15 -6.47 16 18 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 19 C 0.00 -0.11 5.48 -17.43 -0.10 -0.20 16 20 N -0.92 -26.74 10.36 55.49 0.57 -26.16 16 21 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.18 4.30 4.63 -3.39 -0.02 4.29 16 26 C -0.12 -2.23 4.10 -88.48 -0.36 -2.60 16 27 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 28 C 0.12 2.09 6.19 -3.60 -0.02 2.07 16 29 C -0.14 -1.46 9.00 -26.73 -0.24 -1.70 16 30 C -0.16 -1.62 7.92 -26.73 -0.21 -1.83 16 31 H 0.07 1.19 7.58 -51.93 -0.39 0.80 16 32 H 0.06 0.68 8.05 -51.93 -0.42 0.26 16 33 H 0.08 1.04 6.04 -51.93 -0.31 0.73 16 34 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 35 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 37 H 0.12 1.34 6.97 -52.48 -0.37 0.97 16 38 H 0.07 0.85 6.18 -51.93 -0.32 0.53 16 39 H 0.07 1.35 7.57 -51.93 -0.39 0.96 16 40 H 0.03 0.49 7.63 -51.93 -0.40 0.09 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.07 1.89 6.85 -51.93 -0.36 1.54 16 44 H 0.03 0.77 7.39 -51.93 -0.38 0.38 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.07 1.38 7.63 -51.93 -0.40 0.98 16 47 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.11 0.90 7.09 -51.93 -0.37 0.53 16 50 H 0.10 0.98 7.81 -51.93 -0.41 0.58 16 LS Contribution 388.42 15.07 5.85 5.85 Total: -1.00 -31.78 388.42 -11.57 -43.35 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -7.86 Total: 3.72 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -4.05 Total: -7.64 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: -0.58 Total: -52.11 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.78 -11.57 -43.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049249987.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.457 kcal (2) G-P(sol) polarization free energy of solvation -31.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds