Wall clock time and date at job start Sat Apr 11 2020 06:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00448 * 2 1 4 4 H 1.48496 * 109.47099 * 240.00142 * 3 2 1 5 5 H 1.48498 * 109.46833 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46875 * 119.99917 * 3 2 1 7 7 C 1.38816 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00060 * 189.56863 * 7 2 1 9 9 N 1.36937 * 119.99731 * 9.56484 * 7 2 1 10 10 C 1.47145 * 120.98421 * 31.36500 * 9 7 2 11 11 C 1.53289 * 108.38824 * 129.48181 * 10 9 7 12 12 O 1.42961 * 109.22315 * 52.30175 * 11 10 9 13 13 C 1.42961 * 114.16809 * 297.42294 * 12 11 10 14 14 C 1.47149 * 120.98229 * 211.38243 * 9 7 2 15 15 H 1.09003 * 109.68587 * 110.75471 * 14 9 7 16 16 C 1.53004 * 109.68268 * 350.24016 * 14 9 7 17 17 N 1.46499 * 109.46988 * 61.11471 * 16 14 9 18 18 C 1.34780 * 119.99620 * 179.97438 * 17 16 14 19 19 O 1.21272 * 120.00264 * 0.02562 * 18 17 16 20 20 C 1.50703 * 119.99561 * 179.97438 * 18 17 16 21 21 C 1.53036 * 109.45845 * 179.97438 * 20 18 17 22 22 C 1.53196 * 109.31268 * 178.63222 * 21 20 18 23 23 N 1.46924 * 108.77450 * 54.64058 * 22 21 20 24 24 C 1.34769 * 120.62930 * 126.37003 * 23 22 21 25 25 N 1.34769 * 120.00338 * 354.86570 * 24 23 22 26 26 O 1.21587 * 119.99917 * 175.13642 * 24 23 22 27 27 C 1.46920 * 118.73626 * 306.64106 * 23 22 21 28 28 C 1.52761 * 109.01094 * 53.31448 * 27 23 22 29 29 H 0.97007 * 119.99453 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.68144 * 249.20858 * 10 9 7 31 31 H 1.09001 * 109.68215 * 9.75744 * 10 9 7 32 32 H 1.09009 * 109.51504 * 172.22728 * 11 10 9 33 33 H 1.09002 * 109.51729 * 292.37824 * 11 10 9 34 34 H 1.09002 * 109.50602 * 302.65426 * 13 12 11 35 35 H 1.08998 * 109.51247 * 182.50581 * 13 12 11 36 36 H 1.09008 * 109.46926 * 301.11845 * 16 14 9 37 37 H 1.08997 * 109.47663 * 181.11812 * 16 14 9 38 38 H 0.96995 * 119.99933 * 0.02562 * 17 16 14 39 39 H 1.08995 * 109.46474 * 299.98070 * 20 18 17 40 40 H 1.09006 * 109.49534 * 58.68377 * 21 20 18 41 41 H 1.08996 * 109.50483 * 298.58315 * 21 20 18 42 42 H 1.09004 * 109.58314 * 294.85212 * 22 21 20 43 43 H 1.09001 * 109.58231 * 174.42975 * 22 21 20 44 44 H 0.97006 * 120.00103 * 4.89306 * 25 24 23 45 45 H 0.97003 * 120.00414 * 184.89638 * 25 24 23 46 46 H 1.09001 * 109.58651 * 173.14654 * 27 23 22 47 47 H 1.09001 * 109.59102 * 293.56985 * 27 23 22 48 48 H 1.08994 * 109.56870 * 185.55269 * 28 27 23 49 49 H 1.08995 * 109.38958 * 65.50782 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0790 -1.2088 0.1549 9 7 1.3397 -2.3797 -0.1981 10 6 0.1370 -2.4338 -1.0441 11 6 0.3079 -3.5731 -2.0553 12 8 0.6484 -4.7740 -1.3584 13 6 1.8904 -4.7095 -0.6534 14 6 1.8005 -3.6283 0.4296 15 1 1.0916 -3.9361 1.1984 16 6 3.1790 -3.4115 1.0570 17 7 3.0876 -2.3785 2.0918 18 6 4.1866 -2.0193 2.7843 19 8 5.2513 -2.5508 2.5505 20 6 4.0927 -0.9562 3.8483 21 6 5.4713 -0.7406 4.4766 22 6 5.3791 0.3644 5.5337 23 7 4.3261 0.0118 6.4957 24 6 4.5869 -0.0218 7.8175 25 7 5.8453 0.1676 8.2612 26 8 3.6878 -0.2280 8.6095 27 6 2.9850 -0.3092 5.9889 28 6 3.1025 -1.4013 4.9272 29 1 -0.4850 0.8402 0.0004 30 1 -0.7397 -2.6216 -0.4242 31 1 0.0174 -1.4883 -1.5731 32 1 -0.6251 -3.7200 -2.5995 33 1 1.1034 -3.3212 -2.7567 34 1 2.6917 -4.4616 -1.3496 35 1 2.0960 -5.6739 -0.1890 36 1 3.8825 -3.0936 0.2874 37 1 3.5257 -4.3434 1.5036 38 1 2.2359 -1.9536 2.2790 39 1 3.7471 -0.0242 3.4011 40 1 6.1814 -0.4463 3.7037 41 1 5.8062 -1.6657 4.9457 42 1 5.1324 1.3108 5.0524 43 1 6.3334 0.4539 6.0528 44 1 6.5504 0.3984 7.6361 45 1 6.0461 0.0732 9.2055 46 1 2.3600 -0.6641 6.8084 47 1 2.5390 0.5811 5.5455 48 1 2.1266 -1.5773 4.4749 49 1 3.4594 -2.3205 5.3916 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051237665.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:50 Heat of formation + Delta-G solvation = -81.520083 kcal Electronic energy + Delta-G solvation = -31588.382786 eV Core-core repulsion = 27358.345208 eV Total energy + Delta-G solvation = -4230.037578 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.58953 -39.46802 -38.45874 -37.02397 -35.35200 -34.16212 -33.62864 -32.58975 -31.55574 -30.96240 -30.40651 -27.32795 -26.54503 -24.94508 -23.49897 -23.35341 -22.14702 -21.49191 -20.03741 -19.72688 -19.39620 -18.55843 -17.12205 -17.06261 -16.29071 -15.95070 -15.77165 -15.49648 -15.22247 -14.97606 -14.68575 -14.56237 -14.36187 -14.05115 -13.91384 -13.72733 -13.54033 -13.31340 -13.03439 -12.93223 -12.57566 -12.38669 -11.89007 -11.83981 -11.58469 -11.36625 -11.11643 -10.94693 -10.84171 -10.74594 -10.64277 -10.45754 -10.31809 -10.28213 -10.09626 -9.86899 -9.71138 -9.41369 -9.00833 -8.73799 -8.70449 -8.31363 -6.77900 -5.95796 -3.46367 2.64414 3.05847 3.11600 3.20938 3.30178 3.31441 3.71745 3.91481 4.27977 4.49805 4.55566 4.77934 4.89489 4.95405 5.10554 5.13327 5.21397 5.23733 5.38815 5.54617 5.58743 5.65147 5.70063 5.72802 5.78842 5.83717 5.88973 5.99105 6.05123 6.07628 6.12303 6.19697 6.26368 6.30103 6.33248 6.48995 6.63278 6.71812 6.74146 7.03847 7.06702 7.45750 7.63802 7.68825 7.83447 8.16547 8.24444 8.46394 8.77512 9.00275 9.60486 10.20196 11.10465 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014002 B = 0.003369 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.233268 B = 8309.321980 C = 9189.844209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.010 3.990 3 Si 0.898 3.102 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.256 4.256 8 H 0.072 0.928 9 N -0.591 5.591 10 C 0.144 3.856 11 C 0.034 3.966 12 O -0.392 6.392 13 C 0.056 3.944 14 C 0.125 3.875 15 H 0.041 0.959 16 C 0.136 3.864 17 N -0.692 5.692 18 C 0.514 3.486 19 O -0.564 6.564 20 C -0.108 4.108 21 C -0.112 4.112 22 C 0.110 3.890 23 N -0.626 5.626 24 C 0.710 3.290 25 N -0.870 5.870 26 O -0.597 6.597 27 C 0.130 3.870 28 C -0.125 4.125 29 H 0.256 0.744 30 H 0.029 0.971 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.046 0.954 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.415 0.585 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.396 0.604 45 H 0.412 0.588 46 H 0.097 0.903 47 H 0.071 0.929 48 H 0.086 0.914 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.602 -0.608 8.100 11.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.189 4.189 3 Si 0.727 3.273 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.385 4.385 8 H 0.090 0.910 9 N -0.317 5.317 10 C 0.019 3.981 11 C -0.043 4.043 12 O -0.311 6.311 13 C -0.023 4.023 14 C 0.018 3.982 15 H 0.059 0.941 16 C 0.011 3.989 17 N -0.343 5.343 18 C 0.300 3.700 19 O -0.445 6.445 20 C -0.129 4.129 21 C -0.150 4.150 22 C -0.013 4.013 23 N -0.364 5.364 24 C 0.410 3.590 25 N -0.440 5.440 26 O -0.475 6.475 27 C 0.007 3.993 28 C -0.164 4.164 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.253 0.747 39 H 0.119 0.881 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.226 0.774 45 H 0.244 0.756 46 H 0.115 0.885 47 H 0.089 0.911 48 H 0.105 0.895 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.372 -1.133 8.305 11.847 hybrid contribution 0.637 1.554 -0.105 1.683 sum 9.009 0.421 8.201 12.190 Atomic orbital electron populations 1.69957 1.05159 1.25799 1.53355 1.25154 0.95305 0.98130 1.00357 0.86457 0.78916 0.83547 0.78348 1.20999 1.21528 1.20725 1.19174 0.91045 0.83183 1.45118 0.91015 1.44076 1.30781 1.03275 1.53554 1.21423 0.88668 0.96669 0.91389 1.23360 0.99061 0.86752 0.95173 1.87803 1.39292 1.36611 1.67403 1.22865 0.86462 0.98649 0.94351 1.21426 0.93608 0.89335 0.93824 0.94129 1.21155 0.97421 0.90060 0.90241 1.46008 1.12143 1.39969 1.36210 1.20356 0.84019 0.83332 0.82329 1.90628 1.28693 1.56235 1.68911 1.21286 0.97294 0.99356 0.95007 1.21701 0.96393 0.99118 0.97826 1.21735 0.90332 0.98523 0.90715 1.47297 1.12465 1.72624 1.04058 1.15843 0.83248 0.77547 0.82407 1.43170 1.09057 1.78713 1.13107 1.90950 1.44669 1.57594 1.54317 1.21431 0.82508 0.98047 0.97321 1.21857 0.99897 0.99037 0.95560 0.93341 0.95275 0.88867 0.90247 0.94153 0.93541 0.89948 0.91570 0.92433 0.74704 0.88067 0.89805 0.90758 0.90849 0.90378 0.77361 0.75644 0.88492 0.91064 0.89504 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.28 11.08 55.49 0.61 -22.67 16 2 C 0.01 0.25 5.08 -17.43 -0.09 0.16 16 3 Si 0.90 19.75 29.56 -169.99 -5.03 14.72 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.26 -6.04 7.09 -15.06 -0.11 -6.14 16 8 H 0.07 1.72 5.82 -52.49 -0.31 1.42 16 9 N -0.59 -13.09 3.03 -164.31 -0.50 -13.59 16 10 C 0.14 3.18 5.37 -3.54 -0.02 3.16 16 11 C 0.03 0.65 6.98 37.31 0.26 0.91 16 12 O -0.39 -7.49 10.74 -35.23 -0.38 -7.87 16 13 C 0.06 0.96 6.29 37.31 0.23 1.20 16 14 C 0.13 2.36 3.20 -67.42 -0.22 2.14 16 15 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 16 C 0.14 2.40 4.44 -4.04 -0.02 2.38 16 17 N -0.69 -12.13 3.68 -60.29 -0.22 -12.35 16 18 C 0.51 8.73 7.15 -10.98 -0.08 8.65 16 19 O -0.56 -11.07 15.98 5.56 0.09 -10.98 16 20 C -0.11 -1.47 2.49 -91.72 -0.23 -1.70 16 21 C -0.11 -1.29 4.65 -26.61 -0.12 -1.41 16 22 C 0.11 1.01 6.43 -3.71 -0.02 0.99 16 23 N -0.63 -7.14 2.98 -178.77 -0.53 -7.67 16 24 C 0.71 8.92 8.57 -86.93 -0.75 8.18 16 25 N -0.87 -7.02 8.79 27.63 0.24 -6.78 16 26 O -0.60 -10.00 16.61 5.29 0.09 -9.91 16 27 C 0.13 1.56 6.39 -3.94 -0.03 1.53 16 28 C -0.12 -1.53 5.25 -26.83 -0.14 -1.67 16 29 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 2.27 6.30 -51.93 -0.33 1.94 16 32 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.07 1.28 7.54 -51.92 -0.39 0.89 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.41 7.59 6.75 -40.82 -0.28 7.31 16 39 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.08 0.99 8.07 -51.93 -0.42 0.57 16 41 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.50 5.56 -51.93 -0.29 0.21 16 44 H 0.40 2.17 6.29 -40.82 -0.26 1.91 16 45 H 0.41 2.77 8.93 -40.82 -0.36 2.40 16 46 H 0.10 1.26 7.04 -51.93 -0.37 0.89 16 47 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.09 1.06 7.52 -51.93 -0.39 0.67 16 49 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 379.00 15.07 5.71 5.71 Total: -1.00 -31.26 379.00 -8.82 -40.08 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -7.59 Total: 12.93 kcal Atomic # 6 Polarization: 19.69 SS G_CDS: -1.32 Total: 18.37 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: -0.40 Total: -63.06 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.20 Total: -28.76 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.03 Total: 14.72 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.26 -8.82 -40.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051237665.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.439 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds