Wall clock time and date at job start Sat Apr 11 2020 06:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00448 * 2 1 4 4 H 1.48496 * 109.47099 * 240.00142 * 3 2 1 5 5 H 1.48498 * 109.46833 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46875 * 119.99917 * 3 2 1 7 7 C 1.38816 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00060 * 189.56863 * 7 2 1 9 9 N 1.36937 * 119.99731 * 9.56484 * 7 2 1 10 10 C 1.47145 * 120.98421 * 31.36500 * 9 7 2 11 11 C 1.53289 * 108.38824 * 129.48181 * 10 9 7 12 12 O 1.42961 * 109.22315 * 52.30175 * 11 10 9 13 13 C 1.42961 * 114.16809 * 297.42294 * 12 11 10 14 14 C 1.47149 * 120.98229 * 211.38243 * 9 7 2 15 15 H 1.09003 * 109.68587 * 110.75471 * 14 9 7 16 16 C 1.53004 * 109.68268 * 350.24016 * 14 9 7 17 17 N 1.46499 * 109.46988 * 61.11471 * 16 14 9 18 18 C 1.34780 * 119.99620 * 179.97438 * 17 16 14 19 19 O 1.21272 * 120.00264 * 0.02562 * 18 17 16 20 20 C 1.50703 * 119.99561 * 179.97438 * 18 17 16 21 21 C 1.53036 * 109.45845 * 179.97438 * 20 18 17 22 22 C 1.53196 * 109.31268 * 178.63222 * 21 20 18 23 23 N 1.46924 * 108.77450 * 54.64058 * 22 21 20 24 24 C 1.34769 * 120.62930 * 126.37003 * 23 22 21 25 25 N 1.34769 * 120.00338 * 354.86570 * 24 23 22 26 26 O 1.21587 * 119.99917 * 175.13642 * 24 23 22 27 27 C 1.46920 * 118.73626 * 306.64106 * 23 22 21 28 28 C 1.52761 * 109.01094 * 53.31448 * 27 23 22 29 29 H 0.97007 * 119.99453 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.68144 * 249.20858 * 10 9 7 31 31 H 1.09001 * 109.68215 * 9.75744 * 10 9 7 32 32 H 1.09009 * 109.51504 * 172.22728 * 11 10 9 33 33 H 1.09002 * 109.51729 * 292.37824 * 11 10 9 34 34 H 1.09002 * 109.50602 * 302.65426 * 13 12 11 35 35 H 1.08998 * 109.51247 * 182.50581 * 13 12 11 36 36 H 1.09008 * 109.46926 * 301.11845 * 16 14 9 37 37 H 1.08997 * 109.47663 * 181.11812 * 16 14 9 38 38 H 0.96995 * 119.99933 * 0.02562 * 17 16 14 39 39 H 1.08995 * 109.46474 * 299.98070 * 20 18 17 40 40 H 1.09006 * 109.49534 * 58.68377 * 21 20 18 41 41 H 1.08996 * 109.50483 * 298.58315 * 21 20 18 42 42 H 1.09004 * 109.58314 * 294.85212 * 22 21 20 43 43 H 1.09001 * 109.58231 * 174.42975 * 22 21 20 44 44 H 0.97006 * 120.00103 * 4.89306 * 25 24 23 45 45 H 0.97003 * 120.00414 * 184.89638 * 25 24 23 46 46 H 1.09001 * 109.58651 * 173.14654 * 27 23 22 47 47 H 1.09001 * 109.59102 * 293.56985 * 27 23 22 48 48 H 1.08994 * 109.56870 * 185.55269 * 28 27 23 49 49 H 1.08995 * 109.38958 * 65.50782 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0790 -1.2088 0.1549 9 7 1.3397 -2.3797 -0.1981 10 6 0.1370 -2.4338 -1.0441 11 6 0.3079 -3.5731 -2.0553 12 8 0.6484 -4.7740 -1.3584 13 6 1.8904 -4.7095 -0.6534 14 6 1.8005 -3.6283 0.4296 15 1 1.0916 -3.9361 1.1984 16 6 3.1790 -3.4115 1.0570 17 7 3.0876 -2.3785 2.0918 18 6 4.1866 -2.0193 2.7843 19 8 5.2513 -2.5508 2.5505 20 6 4.0927 -0.9562 3.8483 21 6 5.4713 -0.7406 4.4766 22 6 5.3791 0.3644 5.5337 23 7 4.3261 0.0118 6.4957 24 6 4.5869 -0.0218 7.8175 25 7 5.8453 0.1676 8.2612 26 8 3.6878 -0.2280 8.6095 27 6 2.9850 -0.3092 5.9889 28 6 3.1025 -1.4013 4.9272 29 1 -0.4850 0.8402 0.0004 30 1 -0.7397 -2.6216 -0.4242 31 1 0.0174 -1.4883 -1.5731 32 1 -0.6251 -3.7200 -2.5995 33 1 1.1034 -3.3212 -2.7567 34 1 2.6917 -4.4616 -1.3496 35 1 2.0960 -5.6739 -0.1890 36 1 3.8825 -3.0936 0.2874 37 1 3.5257 -4.3434 1.5036 38 1 2.2359 -1.9536 2.2790 39 1 3.7471 -0.0242 3.4011 40 1 6.1814 -0.4463 3.7037 41 1 5.8062 -1.6657 4.9457 42 1 5.1324 1.3108 5.0524 43 1 6.3334 0.4539 6.0528 44 1 6.5504 0.3984 7.6361 45 1 6.0461 0.0732 9.2055 46 1 2.3600 -0.6641 6.8084 47 1 2.5390 0.5811 5.5455 48 1 2.1266 -1.5773 4.4749 49 1 3.4594 -2.3205 5.3916 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051237665.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:49 Heat of formation + Delta-G solvation = -104.954128 kcal Electronic energy + Delta-G solvation = -31589.398963 eV Core-core repulsion = 27358.345208 eV Total energy + Delta-G solvation = -4231.053755 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.61668 -40.77057 -39.94387 -38.11959 -36.90304 -35.29767 -35.07130 -33.66459 -33.06348 -32.15987 -31.79830 -29.01247 -27.79790 -26.21056 -25.21152 -24.29944 -23.50095 -22.74549 -21.42941 -21.11046 -20.46273 -19.48712 -18.67703 -17.93919 -17.76262 -17.51372 -17.22605 -16.47291 -16.42160 -16.30032 -16.20731 -15.92699 -15.55845 -15.45328 -15.25408 -15.01957 -14.84506 -14.61559 -14.32840 -14.27849 -13.93569 -13.40493 -13.34351 -13.07979 -12.96965 -12.79434 -12.69196 -12.48042 -12.28765 -12.13389 -11.99234 -11.86518 -11.79437 -11.67487 -11.31757 -11.29361 -10.85706 -10.71758 -10.54845 -10.52612 -9.81401 -9.63439 -8.59219 -7.83005 -5.35308 1.44384 1.50922 1.54534 1.74206 1.79157 2.11080 2.38764 2.50058 3.04160 3.19887 3.33308 3.45911 3.62707 3.76206 3.79550 4.03051 4.05354 4.21032 4.24906 4.31566 4.37127 4.41650 4.48055 4.58366 4.64121 4.65436 4.66343 4.69451 4.74985 4.77460 4.84716 4.94173 5.01786 5.08953 5.13180 5.27722 5.32196 5.45781 5.60617 5.66701 5.71983 5.85040 6.01789 6.30807 6.39861 6.74594 6.89166 7.13531 7.37376 7.60063 7.79338 8.36283 9.21160 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014002 B = 0.003369 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.233268 B = 8309.321980 C = 9189.844209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.031 4.031 3 Si 0.944 3.056 4 H -0.291 1.291 5 H -0.299 1.299 6 H -0.263 1.263 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.605 5.605 10 C 0.150 3.850 11 C 0.045 3.955 12 O -0.398 6.398 13 C 0.057 3.943 14 C 0.127 3.873 15 H 0.036 0.964 16 C 0.142 3.858 17 N -0.696 5.696 18 C 0.512 3.488 19 O -0.590 6.590 20 C -0.104 4.104 21 C -0.106 4.106 22 C 0.113 3.887 23 N -0.626 5.626 24 C 0.703 3.297 25 N -0.849 5.849 26 O -0.644 6.644 27 C 0.132 3.868 28 C -0.114 4.114 29 H 0.249 0.751 30 H 0.005 0.995 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.043 0.957 34 H 0.049 0.951 35 H 0.116 0.884 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.411 0.589 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.112 0.888 44 H 0.411 0.589 45 H 0.420 0.580 46 H 0.084 0.916 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.399 -0.723 8.521 13.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.228 4.228 3 Si 0.774 3.226 4 H -0.218 1.218 5 H -0.225 1.225 6 H -0.188 1.188 7 C -0.373 4.373 8 H 0.087 0.913 9 N -0.331 5.331 10 C 0.024 3.976 11 C -0.032 4.032 12 O -0.317 6.317 13 C -0.022 4.022 14 C 0.020 3.980 15 H 0.053 0.947 16 C 0.018 3.982 17 N -0.346 5.346 18 C 0.299 3.701 19 O -0.472 6.472 20 C -0.125 4.125 21 C -0.145 4.145 22 C -0.009 4.009 23 N -0.364 5.364 24 C 0.403 3.597 25 N -0.420 5.420 26 O -0.527 6.527 27 C 0.009 3.991 28 C -0.153 4.153 29 H 0.059 0.941 30 H 0.023 0.977 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.134 0.866 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.248 0.752 39 H 0.118 0.882 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.130 0.870 44 H 0.244 0.756 45 H 0.253 0.747 46 H 0.103 0.897 47 H 0.096 0.904 48 H 0.102 0.898 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.238 -1.259 8.720 13.507 hybrid contribution 0.117 1.520 -0.257 1.546 sum 10.355 0.262 8.464 13.376 Atomic orbital electron populations 1.70096 1.06266 1.25658 1.55241 1.25650 0.95739 1.00358 1.01040 0.85700 0.77801 0.80609 0.78529 1.21809 1.22546 1.18849 1.19243 0.90885 0.83784 1.43398 0.91270 1.44282 1.30567 1.04083 1.54145 1.21232 0.87986 0.96801 0.91579 1.23225 1.00391 0.85488 0.94127 1.87805 1.40131 1.36263 1.67498 1.22995 0.85853 0.99600 0.93750 1.21534 0.93841 0.88390 0.94214 0.94678 1.21078 0.96209 0.90935 0.90008 1.46062 1.12212 1.40014 1.36269 1.20920 0.83230 0.83472 0.82457 1.90610 1.29476 1.57333 1.69790 1.21317 0.99046 0.97880 0.94293 1.21663 0.94842 0.99678 0.98281 1.21883 0.91248 0.97818 0.89983 1.47318 1.12618 1.72279 1.04165 1.16070 0.83912 0.77418 0.82322 1.42960 1.07843 1.77237 1.13985 1.90919 1.46444 1.59769 1.55527 1.21336 0.83101 0.98053 0.96643 1.21743 0.99396 0.98932 0.95182 0.94143 0.97656 0.91487 0.87910 0.93887 0.93302 0.86625 0.93199 0.90545 0.75175 0.88153 0.89789 0.91574 0.89691 0.87028 0.75565 0.74665 0.89725 0.90388 0.89768 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -48.99 11.08 21.65 0.24 -48.75 16 2 C -0.03 -1.54 5.08 84.86 0.43 -1.11 16 3 Si 0.94 40.42 29.56 68.60 2.03 42.44 16 4 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.30 -13.20 7.11 99.48 0.71 -12.50 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 7 C -0.24 -11.46 7.09 84.03 0.60 -10.87 16 8 H 0.07 3.29 5.82 -2.91 -0.02 3.28 16 9 N -0.60 -26.75 3.03 -673.74 -2.04 -28.80 16 10 C 0.15 6.67 5.37 86.35 0.46 7.13 16 11 C 0.05 1.66 6.98 72.08 0.50 2.16 16 12 O -0.40 -14.42 10.74 -148.98 -1.60 -16.03 16 13 C 0.06 1.83 6.29 72.08 0.45 2.28 16 14 C 0.13 4.64 3.20 44.97 0.14 4.78 16 15 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 16 C 0.14 4.89 4.44 86.38 0.38 5.27 16 17 N -0.70 -23.97 3.68 -463.05 -1.71 -25.67 16 18 C 0.51 16.94 7.15 87.66 0.63 17.57 16 19 O -0.59 -22.56 15.98 -3.01 -0.05 -22.61 16 20 C -0.10 -2.69 2.49 -11.51 -0.03 -2.72 16 21 C -0.11 -2.23 4.65 30.67 0.14 -2.09 16 22 C 0.11 1.75 6.43 86.36 0.56 2.30 16 23 N -0.63 -13.13 2.98 -837.76 -2.49 -15.63 16 24 C 0.70 16.56 8.57 179.06 1.53 18.09 16 25 N -0.85 -11.52 8.79 -184.76 -1.62 -13.15 16 26 O -0.64 -21.32 16.61 -3.99 -0.07 -21.39 16 27 C 0.13 3.05 6.39 86.22 0.55 3.60 16 28 C -0.11 -2.71 5.25 30.53 0.16 -2.55 16 29 H 0.25 13.08 8.31 -92.70 -0.77 12.31 16 30 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.07 3.34 6.30 -2.39 -0.02 3.32 16 32 H 0.10 3.25 8.14 -2.38 -0.02 3.23 16 33 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 36 H 0.05 1.89 7.54 -2.38 -0.02 1.87 16 37 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.41 14.97 6.75 -92.71 -0.63 14.34 16 39 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 40 H 0.08 1.80 8.07 -2.38 -0.02 1.78 16 41 H 0.07 1.52 8.13 -2.39 -0.02 1.50 16 42 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 43 H 0.11 0.96 5.56 -2.39 -0.01 0.95 16 44 H 0.41 3.04 6.29 -92.70 -0.58 2.46 16 45 H 0.42 4.67 8.93 -92.71 -0.83 3.84 16 46 H 0.08 2.20 7.04 -2.39 -0.02 2.18 16 47 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.08 2.04 7.52 -2.39 -0.02 2.02 16 49 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -67.91 379.00 -1.83 -69.74 By element: Atomic # 1 Polarization: 37.00 SS G_CDS: -1.04 Total: 35.96 kcal Atomic # 6 Polarization: 37.35 SS G_CDS: 6.52 Total: 43.87 kcal Atomic # 7 Polarization: -124.36 SS G_CDS: -7.63 Total: -131.99 kcal Atomic # 8 Polarization: -58.30 SS G_CDS: -1.71 Total: -60.02 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.44 kcal Total: -67.91 -1.83 -69.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051237665.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.216 kcal (2) G-P(sol) polarization free energy of solvation -67.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds