Wall clock time and date at job start Sat Apr 11 2020 06:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00436 * 2 1 4 4 H 1.48504 * 109.47443 * 96.45676 * 3 2 1 5 5 H 1.48504 * 109.47146 * 216.45692 * 3 2 1 6 6 H 1.48503 * 109.46954 * 336.45227 * 3 2 1 7 7 C 1.38810 * 119.99520 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00633 * 330.29251 * 7 2 1 9 9 N 1.36939 * 120.00063 * 150.29685 * 7 2 1 10 10 C 1.47154 * 120.97866 * 323.10592 * 9 7 2 11 11 C 1.53287 * 108.38772 * 230.51349 * 10 9 7 12 12 O 1.42959 * 109.22703 * 307.69974 * 11 10 9 13 13 C 1.42960 * 114.16492 * 62.57546 * 12 11 10 14 14 C 1.47145 * 120.98778 * 142.83070 * 9 7 2 15 15 H 1.09002 * 109.68255 * 249.21397 * 14 9 7 16 16 C 1.53003 * 109.68086 * 9.76181 * 14 9 7 17 17 N 1.46503 * 109.47076 * 299.09767 * 16 14 9 18 18 C 1.34777 * 120.00252 * 179.97438 * 17 16 14 19 19 O 1.21286 * 119.99651 * 359.97438 * 18 17 16 20 20 C 1.50692 * 120.00341 * 180.02562 * 18 17 16 21 21 C 1.53043 * 109.45771 * 300.06887 * 20 18 17 22 22 C 1.53202 * 109.31144 * 178.61240 * 21 20 18 23 23 N 1.46929 * 108.77224 * 54.63518 * 22 21 20 24 24 C 1.34771 * 120.63001 * 126.37146 * 23 22 21 25 25 N 1.34783 * 120.00099 * 2.07578 * 24 23 22 26 26 O 1.21584 * 120.00309 * 182.07848 * 24 23 22 27 27 C 1.46926 * 118.74038 * 306.38815 * 23 22 21 28 28 C 1.53041 * 109.46172 * 179.97438 * 20 18 17 29 29 H 0.97005 * 119.99665 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.68227 * 350.23991 * 10 9 7 31 31 H 1.09005 * 109.67790 * 110.75218 * 10 9 7 32 32 H 1.09002 * 109.51336 * 67.62279 * 11 10 9 33 33 H 1.08999 * 109.51823 * 187.72343 * 11 10 9 34 34 H 1.09003 * 109.51500 * 57.34765 * 13 12 11 35 35 H 1.09001 * 109.51537 * 177.49737 * 13 12 11 36 36 H 1.08997 * 109.47304 * 59.09324 * 16 14 9 37 37 H 1.08999 * 109.47283 * 179.09794 * 16 14 9 38 38 H 0.97000 * 119.99888 * 0.02562 * 17 16 14 39 39 H 1.09004 * 109.46322 * 60.02513 * 20 18 17 40 40 H 1.08999 * 109.49822 * 298.56338 * 21 20 18 41 41 H 1.08997 * 109.49835 * 58.66751 * 21 20 18 42 42 H 1.08994 * 109.58418 * 294.84660 * 22 21 20 43 43 H 1.08998 * 109.69921 * 174.48822 * 22 21 20 44 44 H 0.97004 * 119.99727 * 4.41693 * 25 24 23 45 45 H 0.96996 * 119.99784 * 184.41911 * 25 24 23 46 46 H 1.09000 * 109.58845 * 293.82608 * 27 23 22 47 47 H 1.08990 * 109.59022 * 173.39894 * 27 23 22 48 48 H 1.08998 * 109.49365 * 301.33248 * 28 20 18 49 49 H 1.08997 * 109.49373 * 61.40347 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6342 1.9676 1.3912 5 1 3.4730 1.4832 -0.8320 6 1 1.3863 2.6881 -0.5594 7 6 2.0101 -1.2022 0.0005 8 1 1.5767 -2.0758 0.4644 9 7 3.2446 -1.2805 -0.5871 10 6 3.5450 -0.5360 -1.8203 11 6 4.1559 -1.5085 -2.8356 12 8 5.2508 -2.1976 -2.2274 13 6 4.8836 -3.0070 -1.1076 14 6 4.3117 -2.1068 -0.0008 15 1 5.0975 -1.4641 0.3962 16 6 3.7356 -2.9713 1.1225 17 7 3.1838 -2.1076 2.1694 18 6 2.6189 -2.6530 3.2648 19 8 2.5669 -3.8589 3.3835 20 6 2.0508 -1.7647 4.3413 21 6 3.1590 -0.8702 4.9016 22 6 2.5708 0.0555 5.9712 23 7 1.8877 -0.7637 6.9817 24 6 2.1920 -0.6370 8.2885 25 7 3.1005 0.2768 8.6834 26 8 1.6469 -1.3472 9.1113 27 6 0.8669 -1.7239 6.5405 28 6 1.4736 -2.6296 5.4642 29 1 -0.4850 0.8401 -0.0004 30 1 2.6267 -0.1111 -2.2256 31 1 4.2544 0.2627 -1.6033 32 1 3.4009 -2.2295 -3.1489 33 1 4.5113 -0.9531 -3.7035 34 1 4.1311 -3.7335 -1.4146 35 1 5.7633 -3.5296 -0.7320 36 1 2.9460 -3.6075 0.7229 37 1 4.5253 -3.5934 1.5436 38 1 3.2245 -1.1432 2.0739 39 1 1.2609 -1.1429 3.9198 40 1 3.9376 -1.4905 5.3455 41 1 3.5850 -0.2713 4.0967 42 1 1.8568 0.7384 5.5109 43 1 3.3704 0.6263 6.4432 44 1 3.4881 0.8865 8.0361 45 1 3.3669 0.3248 9.6148 46 1 0.0139 -1.1861 6.1266 47 1 0.5438 -2.3289 7.3876 48 1 0.7004 -3.2826 5.0595 49 1 2.2677 -3.2340 5.9026 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051237666.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:52 Heat of formation + Delta-G solvation = -74.445013 kcal Electronic energy + Delta-G solvation = -31640.223966 eV Core-core repulsion = 27410.493186 eV Total energy + Delta-G solvation = -4229.730780 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.55098 -39.47537 -38.64354 -36.99559 -35.46469 -34.09230 -33.66191 -32.63056 -31.75578 -31.06388 -30.77253 -27.62378 -26.55415 -24.95952 -23.44284 -23.34469 -22.37119 -21.64684 -20.08187 -19.89128 -19.36701 -18.52243 -17.15564 -17.00027 -16.38466 -16.04528 -15.83786 -15.48270 -15.26427 -15.16983 -14.88166 -14.44417 -14.41648 -14.37626 -14.09953 -13.71942 -13.62506 -13.26630 -13.10749 -12.84544 -12.64519 -12.49844 -12.11712 -11.96859 -11.71860 -11.57731 -11.34261 -11.01175 -10.85752 -10.80192 -10.72064 -10.60711 -10.31395 -10.25970 -9.96415 -9.85100 -9.63293 -9.48336 -9.19213 -8.69281 -8.58328 -8.32480 -6.98637 -6.21712 -3.58841 2.67408 3.08238 3.15753 3.19120 3.32733 3.35056 3.72958 3.94239 4.28423 4.36147 4.59452 4.63360 4.71139 4.87263 5.07957 5.08333 5.24566 5.27817 5.40931 5.42430 5.49821 5.56465 5.64507 5.67042 5.74330 5.79865 5.84792 5.90081 5.91806 5.93566 6.04268 6.08846 6.11456 6.24232 6.37138 6.38875 6.40633 6.58616 6.66987 6.73845 6.76244 7.07182 7.59027 7.71011 7.77422 8.16789 8.19152 8.48612 8.72954 8.81504 9.48973 9.92866 10.91962 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014902 B = 0.003362 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.521594 B = 8326.902948 C = 9099.129989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.047 3.953 3 Si 0.833 3.167 4 H -0.287 1.287 5 H -0.249 1.249 6 H -0.297 1.297 7 C -0.275 4.275 8 H 0.086 0.914 9 N -0.601 5.601 10 C 0.107 3.893 11 C 0.042 3.958 12 O -0.390 6.390 13 C 0.055 3.945 14 C 0.123 3.877 15 H 0.044 0.956 16 C 0.138 3.862 17 N -0.692 5.692 18 C 0.517 3.483 19 O -0.561 6.561 20 C -0.107 4.107 21 C -0.125 4.125 22 C 0.112 3.888 23 N -0.625 5.625 24 C 0.709 3.291 25 N -0.871 5.871 26 O -0.597 6.597 27 C 0.127 3.873 28 C -0.110 4.110 29 H 0.264 0.736 30 H 0.075 0.925 31 H 0.040 0.960 32 H 0.049 0.951 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.409 0.591 39 H 0.104 0.896 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.396 0.604 45 H 0.412 0.588 46 H 0.069 0.931 47 H 0.096 0.904 48 H 0.085 0.915 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.307 2.462 7.515 11.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.156 4.156 3 Si 0.660 3.340 4 H -0.214 1.214 5 H -0.174 1.174 6 H -0.223 1.223 7 C -0.402 4.402 8 H 0.103 0.897 9 N -0.328 5.328 10 C -0.018 4.018 11 C -0.036 4.036 12 O -0.308 6.308 13 C -0.024 4.024 14 C 0.017 3.983 15 H 0.061 0.939 16 C 0.013 3.987 17 N -0.343 5.343 18 C 0.303 3.697 19 O -0.440 6.440 20 C -0.128 4.128 21 C -0.163 4.163 22 C -0.011 4.011 23 N -0.364 5.364 24 C 0.409 3.591 25 N -0.441 5.441 26 O -0.476 6.476 27 C 0.004 3.996 28 C -0.149 4.149 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.246 0.754 39 H 0.122 0.878 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.226 0.774 45 H 0.243 0.757 46 H 0.087 0.913 47 H 0.114 0.886 48 H 0.104 0.896 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.814 1.168 7.926 11.191 hybrid contribution 0.387 2.053 -0.102 2.091 sum 8.201 3.221 7.824 11.783 Atomic orbital electron populations 1.69996 1.06125 1.26982 1.48940 1.25469 0.94826 0.97401 0.97905 0.87733 0.81750 0.85621 0.78871 1.21394 1.17446 1.22324 1.18765 0.90619 0.95483 1.35354 0.89685 1.44417 1.09984 1.54439 1.23915 1.22151 0.99252 0.93463 0.86948 1.23146 0.89260 0.95523 0.95644 1.87817 1.33758 1.63429 1.45792 1.22962 0.99602 0.92578 0.87212 1.21606 0.91602 0.92921 0.92184 0.93886 1.21101 0.97598 0.92674 0.87311 1.45899 1.58694 1.11183 1.18511 1.20327 0.77925 0.88647 0.82799 1.90641 1.58575 1.15164 1.79663 1.21274 0.99104 0.97461 0.94972 1.21896 0.97794 0.98140 0.98511 1.21673 0.96733 0.93148 0.89590 1.47312 1.42386 1.42395 1.04264 1.15851 0.79855 0.80807 0.82566 1.43169 1.47565 1.39271 1.14063 1.90944 1.56529 1.48450 1.51673 1.21599 0.89191 0.90598 0.98196 1.21711 1.01731 0.97226 0.94236 0.92564 0.90713 0.94268 0.93234 0.89916 0.92973 0.89582 0.91242 0.92322 0.75390 0.87766 0.90944 0.89943 0.90556 0.90334 0.77369 0.75667 0.91262 0.88565 0.89642 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.92 13.97 55.49 0.78 -23.14 16 2 C 0.05 1.16 4.96 -17.43 -0.09 1.07 16 3 Si 0.83 18.31 27.00 -169.99 -4.59 13.72 16 4 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.25 -5.22 4.42 56.52 0.25 -4.97 16 6 H -0.30 -6.91 7.11 56.52 0.40 -6.50 16 7 C -0.27 -6.47 7.08 -15.06 -0.11 -6.58 16 8 H 0.09 2.25 6.36 -52.49 -0.33 1.92 16 9 N -0.60 -12.30 2.59 -164.06 -0.43 -12.73 16 10 C 0.11 2.08 4.55 -3.54 -0.02 2.06 16 11 C 0.04 0.71 6.98 37.31 0.26 0.97 16 12 O -0.39 -6.72 10.74 -35.23 -0.38 -7.10 16 13 C 0.06 0.87 6.31 37.53 0.24 1.11 16 14 C 0.12 2.14 3.22 -67.21 -0.22 1.92 16 15 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 16 C 0.14 2.37 4.47 -4.04 -0.02 2.35 16 17 N -0.69 -11.99 3.79 -60.29 -0.23 -12.22 16 18 C 0.52 9.03 7.15 -10.99 -0.08 8.95 16 19 O -0.56 -11.49 15.98 5.55 0.09 -11.40 16 20 C -0.11 -1.50 2.49 -91.73 -0.23 -1.73 16 21 C -0.12 -1.39 5.27 -26.60 -0.14 -1.53 16 22 C 0.11 1.06 6.39 -3.70 -0.02 1.04 16 23 N -0.63 -7.31 2.97 -178.50 -0.53 -7.84 16 24 C 0.71 9.08 8.58 -86.92 -0.75 8.33 16 25 N -0.87 -7.19 8.76 27.63 0.24 -6.95 16 26 O -0.60 -10.12 16.59 5.29 0.09 -10.04 16 27 C 0.13 1.58 6.44 -3.71 -0.02 1.55 16 28 C -0.11 -1.50 4.65 -26.61 -0.12 -1.63 16 29 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.07 1.55 6.66 -51.93 -0.35 1.20 16 31 H 0.04 0.78 6.25 -51.93 -0.32 0.45 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.07 1.36 7.53 -51.93 -0.39 0.97 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.41 7.18 6.74 -40.82 -0.27 6.90 16 39 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 0.89 7.52 -51.93 -0.39 0.49 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.52 5.65 -51.93 -0.29 0.23 16 44 H 0.40 2.25 6.34 -40.82 -0.26 1.99 16 45 H 0.41 2.84 8.93 -40.82 -0.36 2.48 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.10 1.29 7.00 -51.93 -0.36 0.92 16 48 H 0.09 1.23 8.07 -51.93 -0.42 0.81 16 49 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 LS Contribution 374.47 15.07 5.64 5.64 Total: -1.00 -32.20 374.47 -8.32 -40.52 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -7.70 Total: 13.63 kcal Atomic # 6 Polarization: 19.20 SS G_CDS: -1.31 Total: 17.89 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: -0.17 Total: -62.88 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.20 Total: -28.53 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -4.59 Total: 13.72 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.20 -8.32 -40.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051237666.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.925 kcal (2) G-P(sol) polarization free energy of solvation -32.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds