Wall clock time and date at job start Sat Apr 11 2020 06:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00436 * 2 1 4 4 H 1.48504 * 109.47443 * 96.45676 * 3 2 1 5 5 H 1.48504 * 109.47146 * 216.45692 * 3 2 1 6 6 H 1.48503 * 109.46954 * 336.45227 * 3 2 1 7 7 C 1.38810 * 119.99520 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00633 * 330.29251 * 7 2 1 9 9 N 1.36939 * 120.00063 * 150.29685 * 7 2 1 10 10 C 1.47154 * 120.97866 * 323.10592 * 9 7 2 11 11 C 1.53287 * 108.38772 * 230.51349 * 10 9 7 12 12 O 1.42959 * 109.22703 * 307.69974 * 11 10 9 13 13 C 1.42960 * 114.16492 * 62.57546 * 12 11 10 14 14 C 1.47145 * 120.98778 * 142.83070 * 9 7 2 15 15 H 1.09002 * 109.68255 * 249.21397 * 14 9 7 16 16 C 1.53003 * 109.68086 * 9.76181 * 14 9 7 17 17 N 1.46503 * 109.47076 * 299.09767 * 16 14 9 18 18 C 1.34777 * 120.00252 * 179.97438 * 17 16 14 19 19 O 1.21286 * 119.99651 * 359.97438 * 18 17 16 20 20 C 1.50692 * 120.00341 * 180.02562 * 18 17 16 21 21 C 1.53043 * 109.45771 * 300.06887 * 20 18 17 22 22 C 1.53202 * 109.31144 * 178.61240 * 21 20 18 23 23 N 1.46929 * 108.77224 * 54.63518 * 22 21 20 24 24 C 1.34771 * 120.63001 * 126.37146 * 23 22 21 25 25 N 1.34783 * 120.00099 * 2.07578 * 24 23 22 26 26 O 1.21584 * 120.00309 * 182.07848 * 24 23 22 27 27 C 1.46926 * 118.74038 * 306.38815 * 23 22 21 28 28 C 1.53041 * 109.46172 * 179.97438 * 20 18 17 29 29 H 0.97005 * 119.99665 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.68227 * 350.23991 * 10 9 7 31 31 H 1.09005 * 109.67790 * 110.75218 * 10 9 7 32 32 H 1.09002 * 109.51336 * 67.62279 * 11 10 9 33 33 H 1.08999 * 109.51823 * 187.72343 * 11 10 9 34 34 H 1.09003 * 109.51500 * 57.34765 * 13 12 11 35 35 H 1.09001 * 109.51537 * 177.49737 * 13 12 11 36 36 H 1.08997 * 109.47304 * 59.09324 * 16 14 9 37 37 H 1.08999 * 109.47283 * 179.09794 * 16 14 9 38 38 H 0.97000 * 119.99888 * 0.02562 * 17 16 14 39 39 H 1.09004 * 109.46322 * 60.02513 * 20 18 17 40 40 H 1.08999 * 109.49822 * 298.56338 * 21 20 18 41 41 H 1.08997 * 109.49835 * 58.66751 * 21 20 18 42 42 H 1.08994 * 109.58418 * 294.84660 * 22 21 20 43 43 H 1.08998 * 109.69921 * 174.48822 * 22 21 20 44 44 H 0.97004 * 119.99727 * 4.41693 * 25 24 23 45 45 H 0.96996 * 119.99784 * 184.41911 * 25 24 23 46 46 H 1.09000 * 109.58845 * 293.82608 * 27 23 22 47 47 H 1.08990 * 109.59022 * 173.39894 * 27 23 22 48 48 H 1.08998 * 109.49365 * 301.33248 * 28 20 18 49 49 H 1.08997 * 109.49373 * 61.40347 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6342 1.9676 1.3912 5 1 3.4730 1.4832 -0.8320 6 1 1.3863 2.6881 -0.5594 7 6 2.0101 -1.2022 0.0005 8 1 1.5767 -2.0758 0.4644 9 7 3.2446 -1.2805 -0.5871 10 6 3.5450 -0.5360 -1.8203 11 6 4.1559 -1.5085 -2.8356 12 8 5.2508 -2.1976 -2.2274 13 6 4.8836 -3.0070 -1.1076 14 6 4.3117 -2.1068 -0.0008 15 1 5.0975 -1.4641 0.3962 16 6 3.7356 -2.9713 1.1225 17 7 3.1838 -2.1076 2.1694 18 6 2.6189 -2.6530 3.2648 19 8 2.5669 -3.8589 3.3835 20 6 2.0508 -1.7647 4.3413 21 6 3.1590 -0.8702 4.9016 22 6 2.5708 0.0555 5.9712 23 7 1.8877 -0.7637 6.9817 24 6 2.1920 -0.6370 8.2885 25 7 3.1005 0.2768 8.6834 26 8 1.6469 -1.3472 9.1113 27 6 0.8669 -1.7239 6.5405 28 6 1.4736 -2.6296 5.4642 29 1 -0.4850 0.8401 -0.0004 30 1 2.6267 -0.1111 -2.2256 31 1 4.2544 0.2627 -1.6033 32 1 3.4009 -2.2295 -3.1489 33 1 4.5113 -0.9531 -3.7035 34 1 4.1311 -3.7335 -1.4146 35 1 5.7633 -3.5296 -0.7320 36 1 2.9460 -3.6075 0.7229 37 1 4.5253 -3.5934 1.5436 38 1 3.2245 -1.1432 2.0739 39 1 1.2609 -1.1429 3.9198 40 1 3.9376 -1.4905 5.3455 41 1 3.5850 -0.2713 4.0967 42 1 1.8568 0.7384 5.5109 43 1 3.3704 0.6263 6.4432 44 1 3.4881 0.8865 8.0361 45 1 3.3669 0.3248 9.6148 46 1 0.0139 -1.1861 6.1266 47 1 0.5438 -2.3289 7.3876 48 1 0.7004 -3.2826 5.0595 49 1 2.2677 -3.2340 5.9026 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051237666.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:52 Heat of formation + Delta-G solvation = -99.871100 kcal Electronic energy + Delta-G solvation = -31641.326524 eV Core-core repulsion = 27410.493186 eV Total energy + Delta-G solvation = -4230.833338 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.61262 -40.79550 -40.02473 -38.11420 -36.95238 -35.25934 -35.04205 -33.81479 -33.38084 -32.35710 -31.84750 -29.21316 -27.79055 -26.19740 -25.10750 -24.32292 -23.71935 -22.81218 -21.56990 -21.13581 -20.46213 -19.47938 -18.70128 -17.95751 -17.84421 -17.48242 -17.24940 -16.71198 -16.50288 -16.42379 -16.10033 -15.94004 -15.68692 -15.54856 -15.36916 -15.08617 -14.81362 -14.46691 -14.40553 -14.28804 -14.10310 -13.70700 -13.44769 -13.41548 -13.03896 -12.84464 -12.66220 -12.45012 -12.31718 -12.25823 -11.99076 -11.84130 -11.67702 -11.44238 -11.34117 -11.27815 -10.98460 -10.72234 -10.64686 -10.32661 -9.83824 -9.64072 -8.68745 -8.13718 -5.48157 1.43499 1.53911 1.59217 1.74431 1.79826 2.10610 2.38760 2.53517 2.91111 3.05010 3.20353 3.31262 3.62767 3.70487 3.80313 4.00475 4.03730 4.17145 4.24884 4.29151 4.34417 4.40336 4.41181 4.47907 4.54657 4.58495 4.63163 4.69975 4.74689 4.77048 4.82452 4.84317 4.95088 4.98419 5.07041 5.08322 5.26067 5.28680 5.44317 5.64955 5.85217 5.93311 6.01859 6.24645 6.29284 6.74271 6.89319 6.93849 7.39596 7.60059 7.64112 8.10936 9.03797 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014902 B = 0.003362 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.521594 B = 8326.902948 C = 9099.129989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.230 1.230 6 H -0.317 1.317 7 C -0.248 4.248 8 H 0.047 0.953 9 N -0.612 5.612 10 C 0.103 3.897 11 C 0.049 3.951 12 O -0.391 6.391 13 C 0.057 3.943 14 C 0.126 3.874 15 H 0.060 0.940 16 C 0.142 3.858 17 N -0.690 5.690 18 C 0.512 3.488 19 O -0.596 6.596 20 C -0.102 4.102 21 C -0.118 4.118 22 C 0.112 3.888 23 N -0.625 5.625 24 C 0.703 3.297 25 N -0.848 5.848 26 O -0.645 6.645 27 C 0.133 3.867 28 C -0.101 4.101 29 H 0.260 0.740 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.114 0.886 34 H 0.043 0.957 35 H 0.121 0.879 36 H 0.038 0.962 37 H 0.080 0.920 38 H 0.409 0.591 39 H 0.098 0.902 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.115 0.885 44 H 0.411 0.589 45 H 0.420 0.580 46 H 0.078 0.922 47 H 0.084 0.916 48 H 0.070 0.930 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.343 4.241 7.496 14.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.197 4.197 3 Si 0.719 3.281 4 H -0.199 1.199 5 H -0.154 1.154 6 H -0.245 1.245 7 C -0.377 4.377 8 H 0.065 0.935 9 N -0.339 5.339 10 C -0.021 4.021 11 C -0.029 4.029 12 O -0.310 6.310 13 C -0.022 4.022 14 C 0.020 3.980 15 H 0.078 0.922 16 C 0.017 3.983 17 N -0.340 5.340 18 C 0.299 3.701 19 O -0.478 6.478 20 C -0.123 4.123 21 C -0.157 4.157 22 C -0.011 4.011 23 N -0.363 5.363 24 C 0.403 3.597 25 N -0.419 5.419 26 O -0.527 6.527 27 C 0.009 3.991 28 C -0.140 4.140 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.131 0.869 34 H 0.062 0.938 35 H 0.138 0.862 36 H 0.056 0.944 37 H 0.098 0.902 38 H 0.247 0.753 39 H 0.116 0.884 40 H 0.092 0.908 41 H 0.111 0.889 42 H 0.102 0.898 43 H 0.133 0.867 44 H 0.245 0.755 45 H 0.254 0.746 46 H 0.097 0.903 47 H 0.102 0.898 48 H 0.088 0.912 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.943 2.988 7.884 13.814 hybrid contribution -0.545 1.387 -0.164 1.499 sum 10.397 4.375 7.720 13.669 Atomic orbital electron populations 1.70122 1.07970 1.27313 1.52270 1.25906 0.95032 1.00310 0.98500 0.86805 0.80719 0.80961 0.79660 1.19917 1.15394 1.24477 1.18438 0.91468 0.93948 1.33800 0.93503 1.44511 1.09849 1.54918 1.24657 1.22186 0.98726 0.94208 0.87022 1.23105 0.89188 0.94930 0.95695 1.87830 1.33705 1.63415 1.46011 1.23058 1.00855 0.91960 0.86318 1.21740 0.90806 0.92810 0.92594 0.92233 1.21065 0.97123 0.92581 0.87529 1.45892 1.58515 1.11122 1.18425 1.20926 0.77237 0.88599 0.83303 1.90619 1.59926 1.16831 1.80440 1.21265 0.99870 0.97223 0.93963 1.21881 0.96590 0.97923 0.99264 1.21865 0.97811 0.92586 0.88800 1.47313 1.42170 1.42254 1.04543 1.16074 0.80218 0.81081 0.82362 1.42941 1.45932 1.38056 1.15001 1.90914 1.58409 1.50460 1.52935 1.21443 0.89750 0.90707 0.97179 1.21582 1.00868 0.97129 0.94390 0.93083 0.92531 0.93620 0.94022 0.86850 0.93832 0.86152 0.94405 0.90183 0.75349 0.88437 0.90825 0.88856 0.89787 0.86700 0.75522 0.74646 0.90347 0.89771 0.91166 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.16 13.97 21.65 0.30 -51.86 16 2 C 0.00 0.05 4.96 84.86 0.42 0.47 16 3 Si 0.89 37.26 27.00 68.60 1.85 39.11 16 4 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.23 -8.77 4.42 99.48 0.44 -8.33 16 6 H -0.32 -14.30 7.11 99.48 0.71 -13.60 16 7 C -0.25 -11.76 7.08 84.03 0.60 -11.17 16 8 H 0.05 2.59 6.36 -2.91 -0.02 2.57 16 9 N -0.61 -24.31 2.59 -672.97 -1.75 -26.05 16 10 C 0.10 3.80 4.55 86.35 0.39 4.19 16 11 C 0.05 1.51 6.98 72.08 0.50 2.01 16 12 O -0.39 -12.18 10.74 -148.98 -1.60 -13.78 16 13 C 0.06 1.63 6.31 72.22 0.46 2.09 16 14 C 0.13 4.10 3.22 45.11 0.15 4.24 16 15 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 16 C 0.14 4.78 4.47 86.38 0.39 5.16 16 17 N -0.69 -23.63 3.79 -463.06 -1.75 -25.38 16 18 C 0.51 18.08 7.15 87.65 0.63 18.71 16 19 O -0.60 -25.10 15.98 -3.05 -0.05 -25.15 16 20 C -0.10 -2.85 2.49 -11.51 -0.03 -2.88 16 21 C -0.12 -2.38 5.27 30.68 0.16 -2.22 16 22 C 0.11 1.79 6.39 86.37 0.55 2.34 16 23 N -0.63 -13.70 2.97 -836.90 -2.49 -16.19 16 24 C 0.70 16.97 8.58 179.05 1.54 18.50 16 25 N -0.85 -11.72 8.76 -184.74 -1.62 -13.34 16 26 O -0.64 -21.75 16.59 -3.98 -0.07 -21.82 16 27 C 0.13 3.31 6.44 86.36 0.56 3.86 16 28 C -0.10 -2.82 4.65 30.67 0.14 -2.68 16 29 H 0.26 14.03 8.31 -92.70 -0.77 13.26 16 30 H 0.06 2.28 6.66 -2.39 -0.02 2.26 16 31 H 0.05 1.65 6.25 -2.38 -0.01 1.63 16 32 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 34 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.04 1.52 7.53 -2.39 -0.02 1.50 16 37 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.41 13.89 6.74 -92.71 -0.62 13.27 16 39 H 0.10 2.90 8.14 -2.38 -0.02 2.88 16 40 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.09 1.72 7.52 -2.39 -0.02 1.71 16 42 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.12 1.01 5.65 -2.39 -0.01 1.00 16 44 H 0.41 3.09 6.34 -92.71 -0.59 2.50 16 45 H 0.42 4.76 8.93 -92.71 -0.83 3.93 16 46 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.08 2.33 7.00 -2.39 -0.02 2.31 16 48 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 49 H 0.06 1.81 8.13 -2.39 -0.02 1.79 16 Total: -1.00 -72.13 374.47 -2.02 -74.16 By element: Atomic # 1 Polarization: 38.95 SS G_CDS: -1.31 Total: 37.64 kcal Atomic # 6 Polarization: 36.19 SS G_CDS: 6.45 Total: 42.64 kcal Atomic # 7 Polarization: -125.51 SS G_CDS: -7.30 Total: -132.81 kcal Atomic # 8 Polarization: -59.02 SS G_CDS: -1.71 Total: -60.74 kcal Atomic # 14 Polarization: 37.26 SS G_CDS: 1.85 Total: 39.11 kcal Total: -72.13 -2.02 -74.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051237666.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.713 kcal (2) G-P(sol) polarization free energy of solvation -72.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds